R-packages – /branches/Matrix-for-R-2.3.x/tests/lmer.R

Rev 3543 – branching an "old-R" compatible version of Matrix

maechler — Sat, 02 Sep 2006 16:36:14 +0000

maechler – 1 file(s) modified
branching an "old-R" compatible version of Matrix

+ /branches/Matrix-for-R-2.3.x (copied from /trunk/Matrix@3542)

Rev 3402 – Generalize conversions

bates — Sat, 12 Aug 2006 17:33:07 +0000

bates – 5 file(s) modified
Generalize conversions

~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/src/CHMfactor.c
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/lmer.R

Rev 3378 – use speedier crossprod() for "dgC" - still slower than t(.) ...

maechler — Mon, 07 Aug 2006 16:51:14 +0000

maechler – 6 file(s) modified
use speedier crossprod() for "dgC" - still slower than t(.) %*% .

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/KNex.Rd
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/tests/lmer.R

Rev 3366 – add another example

maechler — Thu, 03 Aug 2006 17:17:43 +0000

maechler – 1 file(s) modified
add another example

~ /trunk/Matrix/tests/lmer.R

Rev 3361 – hatTrace and warnings about boundary convergence

bates — Tue, 01 Aug 2006 20:26:45 +0000

bates – 6 file(s) modified
hatTrace and warnings about boundary convergence

~ /trunk/Matrix/ChangeLog
+ /trunk/Matrix/inst/external/test3comp.rda
+ /trunk/Matrix/man/hatTrace.Rd
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/tests/lmer.R

Rev 3339 – pass verbose argument to (gl)mer_MCMCsamp() and use it in C ...

maechler — Fri, 21 Jul 2006 08:28:18 +0000

maechler – 6 file(s) modified
pass verbose argument to (gl)mer_MCMCsamp() and use it in C code

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/tests/lmer.R

Rev 3246 – fix segfault from wrong formula

maechler — Mon, 19 Jun 2006 15:36:44 +0000

maechler – 2 file(s) modified
fix segfault from wrong formula

~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/tests/lmer.R

Rev 3182 – a few small changes, comments - on the way to ...

maechler — Sat, 27 May 2006 20:12:08 +0000

maechler – 9 file(s) modified
a few small changes, comments - on the way to get to a better "Compare" (group method) approach

~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/tests/lmer.R
~ /trunk/Matrix/tests/validObj.R

Rev 3148 – cosmetic, comments

maechler — Thu, 18 May 2006 06:44:43 +0000

maechler – 4 file(s) modified
cosmetic, comments

~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/lmer.R

Rev 3027 – Propagate DimNames in dsyMatrix_as_dspMatrix

bates — Thu, 23 Mar 2006 15:16:17 +0000

bates – 5 file(s) modified
Propagate DimNames in dsyMatrix_as_dspMatrix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/tests/lmer.R
~ /trunk/Matrix/TODO

Rev 2347 – lmer(): non-trivial summary() method -> summary.*mer classes

maechler — Tue, 07 Mar 2006 11:05:08 +0000

maechler – 7 file(s) modified
lmer(): non-trivial summary() method -> summary.*mer classes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/lmer-class.Rd
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/tests/lmer.R

Rev 2282 – another half-baked lmer test; cosmetics

maechler — Wed, 08 Feb 2006 17:57:31 +0000

maechler – 9 file(s) modified
another half-baked lmer test; cosmetics

~ /trunk/Matrix/man/index-class.Rd
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/dg_Matrix.R
~ /trunk/Matrix/tests/dpoMatrix.R
~ /trunk/Matrix/tests/dtpMatrix.R
~ /trunk/Matrix/tests/group-methods.R
~ /trunk/Matrix/tests/lmer.R
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/matr-exp.R

Rev 2235 – fix mcmcsamp(*, saveb=TRUE)

maechler — Fri, 20 Jan 2006 18:12:04 +0000

maechler – 2 file(s) modified
fix mcmcsamp(*, saveb=TRUE)

~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/tests/lmer.R

Rev 2226 – + test for 0.995-1 log(.) failure

maechler — Thu, 19 Jan 2006 08:35:48 +0000

maechler – 1 file(s) modified
+ test for 0.995-1 log(.) failure

~ /trunk/Matrix/tests/lmer.R

Rev 2224 – Over to Martin for release 0.995-2

bates — Thu, 19 Jan 2006 00:43:37 +0000

bates – 4 file(s) modified
Over to Martin for release 0.995-2

~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/tests/lmer.R

Rev 2199 – modifications to lmer and related classes

bates — Sun, 15 Jan 2006 19:18:20 +0000

bates – 7 file(s) modified
modifications to lmer and related classes

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/lmer-class.Rd
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/tests/lmer.R

Rev 2194 – Move glmer reweighting to internal_update_ZXy; rearrange the deck chairs

bates — Fri, 13 Jan 2006 23:47:38 +0000

bates – 10 file(s) modified
Move glmer reweighting to internal_update_ZXy; rearrange the deck chairs

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/chm_common.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/tests/lmer.R

Rev 2158 – add ", drop = FALSE" in lmer.coef constructions; plus a ...

maechler — Tue, 10 Jan 2006 18:11:23 +0000

maechler – 7 file(s) modified
add ", drop = FALSE" in lmer.coef constructions; plus a few comments

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/tests/lmer.R

Rev 2055 – minor additions

maechler — Fri, 09 Dec 2005 16:08:00 +0000

maechler – 2 file(s) modified
minor additions

~ /trunk/Matrix/tests/lmer.R
~ /trunk/Matrix/tests/matprod.R

Rev 1679 – Version 0.98-1

bates — Wed, 27 Jul 2005 23:07:04 +0000

bates – 12 file(s) modified
Version 0.98-1

~ /trunk/Matrix/ChangeLog
+ /trunk/Matrix/data/sleepstudy.rda
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/lmer.Rd
+ /trunk/Matrix/man/mcmcsamp.Rd
+ /trunk/Matrix/man/sleepstudy.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/tests/lmer.R

Rev 1677 – updates on lmer_MCMCsamp

bates — Tue, 26 Jul 2005 22:46:14 +0000

bates – 2 file(s) modified
updates on lmer_MCMCsamp

~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/tests/lmer.R

Rev 1632 – Need to print results of tests in a conditional expression

bates — Mon, 04 Jul 2005 15:28:22 +0000

bates – 1 file(s) modified
Need to print results of tests in a conditional expression

~ /trunk/Matrix/tests/lmer.R

Rev 1628 – Added tests for generalized mixed models

bates — Mon, 04 Jul 2005 14:54:13 +0000

bates – 1 file(s) modified
Added tests for generalized mixed models

~ /trunk/Matrix/tests/lmer.R

Rev 1591 – Moving devLaplace calculations to C code

bates — Fri, 10 Jun 2005 18:40:54 +0000

bates – 5 file(s) modified
Moving devLaplace calculations to C code

~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/tests/lmer.R

Rev 1583 – Moving lmer to the Matrix package

bates — Wed, 08 Jun 2005 23:47:45 +0000

bates – 15 file(s) modified
Moving lmer to the Matrix package

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
+ /trunk/Matrix/man/BIC.Rd (copied from /trunk/lme4/man/BIC.Rd@1563)
+ /trunk/Matrix/man/fixef.Rd (copied from /trunk/lme4/man/fixef.Rd@1565)
+ /trunk/Matrix/man/lmer-class.Rd (copied from /trunk/lme4/man/lmer-class.Rd@1565)
+ /trunk/Matrix/man/lmer.Rd (copied from /trunk/lme4/man/lmer.Rd@1565)
+ /trunk/Matrix/man/lmerControl.Rd (copied from /trunk/lme4/man/lmerControl.Rd@1563)
+ /trunk/Matrix/man/ranef.Rd (copied from /trunk/lme4/man/ranef.Rd@1563)
+ /trunk/Matrix/man/VarCorr-class.Rd (copied from /trunk/lme4/man/VarCorr-class.Rd@1563)
+ /trunk/Matrix/man/VarCorr.Rd (copied from /trunk/lme4/man/VarCorr.Rd@1563)
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
+ /trunk/Matrix/R/lmer.R (copied from /trunk/lme4/R/lmer.R@1578)
+ /trunk/Matrix/tests/lmer.R (copied from /trunk/lme4/tests/lmer.R@1565)

Rev 1565 – Use the mer class explicitly and combine code for lmer ...

bates — Mon, 06 Jun 2005 15:37:45 +0000

bates – 8 file(s) modified
Use the mer class explicitly and combine code for lmer and glmer creation

~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/man/fixef.Rd
~ /trunk/lme4/man/lmer-class.Rd
~ /trunk/lme4/man/lmer.Rd
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/tests/lmer.R

Rev 1561 – Release 0.95-10

bates — Mon, 30 May 2005 18:40:45 +0000

bates – 3 file(s) modified
Release 0.95-10

~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/tests/lmer.R

Rev 1559 – Release 0.95-9

bates — Sun, 29 May 2005 02:14:58 +0000

bates – 4 file(s) modified
Release 0.95-9

~ /trunk/lme4/DESCRIPTION
x /trunk/lme4/R/ccoef.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/tests/lmer.R

Rev 1465 –

bates — Sun, 08 May 2005 13:26:43 +0000

bates – 2 file(s) modified

+ /trunk/lme4/tests
+ /trunk/lme4/tests/lmer.R