R-packages – /branches/Matrix-for-R-2.3.x/tests/

Rev 3782 – port graph-Fixes from the trunk; update Version number

maechler — Fri, 15 Sep 2006 15:48:45 +0000

maechler – 5 file(s) modified
port graph-Fixes from the trunk; update Version number

~ /branches/Matrix-for-R-2.3.x/ChangeLog
~ /branches/Matrix-for-R-2.3.x/DESCRIPTION
~ /branches/Matrix-for-R-2.3.x/man/sparseMatrix-class.Rd
~ /branches/Matrix-for-R-2.3.x/R/sparseMatrix.R
~ /branches/Matrix-for-R-2.3.x/tests/other-pkgs.R

Rev 3543 – branching an "old-R" compatible version of Matrix

maechler — Sat, 02 Sep 2006 16:36:14 +0000

maechler – 1 file(s) modified
branching an "old-R" compatible version of Matrix

+ /branches/Matrix-for-R-2.3.x (copied from /trunk/Matrix@3542)

Rev 3524 – several smallish fixes

maechler — Wed, 30 Aug 2006 21:35:09 +0000

maechler – 19 file(s) modified
several smallish fixes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/LU-class.Rd
~ /trunk/Matrix/man/MatrixFactorization-class.Rd
~ /trunk/Matrix/man/sparseLU-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/tests/factorizing.R
~ /trunk/Matrix/tests/group-methods.R
~ /trunk/Matrix/tests/other-pkgs.R
~ /trunk/Matrix/tests/simple.R

Rev 3519 – Generalize %*% methods for sparse matrices

bates — Tue, 29 Aug 2006 16:34:49 +0000

bates – 4 file(s) modified
Generalize %*% methods for sparse matrices

~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/matprod.R

Rev 3452 – Add tests to verify that 'solve' and '%*%' are inverses.

bates — Tue, 22 Aug 2006 00:53:51 +0000

bates – 1 file(s) modified
Add tests to verify that 'solve' and '%*%' are inverses.

~ /trunk/Matrix/tests/matprod.R

Rev 3451 – rename class "LU" to "denseLU" and make "LU" virtual

maechler — Mon, 21 Aug 2006 15:24:47 +0000

maechler – 12 file(s) modified
rename class "LU" to "denseLU" and make "LU" virtual

~ /trunk/Matrix/man/LU-class.Rd
~ /trunk/Matrix/man/lu.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/LU.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/sparseQR.R
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/tests/other-pkgs.R
x /trunk/Matrix/tests/sparseQR.R

Rev 3450 – renamed, to be used for other factorizations; use stopifnot()

maechler — Mon, 21 Aug 2006 15:20:45 +0000

maechler – 1 file(s) modified
renamed, to be used for other factorizations; use stopifnot()

+ /trunk/Matrix/tests/factorizing.R (copied from /trunk/Matrix/tests/sparseQR.R@3449)

Rev 3442 – added

bates — Sun, 20 Aug 2006 16:14:35 +0000

bates – 1 file(s) modified
added

+ /trunk/Matrix/tests/sparseQR.R

Rev 3412 – small update

maechler — Tue, 15 Aug 2006 18:24:58 +0000

maechler – 1 file(s) modified
small update

~ /trunk/Matrix/tests/matprod.R

Rev 3409 – fix replCmat, using new C Csparse_symmetric_to_general

maechler — Tue, 15 Aug 2006 18:17:44 +0000

maechler – 3 file(s) modified
fix replCmat, using new C Csparse_symmetric_to_general

~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save

Rev 3402 – Generalize conversions

bates — Sat, 12 Aug 2006 17:33:07 +0000

bates – 5 file(s) modified
Generalize conversions

~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/src/CHMfactor.c
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/lmer.R

Rev 3395 – Check on all(eq) should be all(eq@x) - worked for wrong ...

bates — Thu, 10 Aug 2006 18:50:32 +0000

bates – 1 file(s) modified
Check on all(eq) should be all(eq@x) - worked for wrong reasons prior to S4SXP

~ /trunk/Matrix/tests/validObj.R

Rev 3391 – update (do not 2.4.0-only code)

maechler — Thu, 10 Aug 2006 09:44:55 +0000

maechler – 2 file(s) modified
update (do not 2.4.0-only code)

~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save

Rev 3390 – S4 type check found test buglet

maechler — Thu, 10 Aug 2006 09:44:17 +0000

maechler – 1 file(s) modified
S4 type check found test buglet

~ /trunk/Matrix/tests/dtpMatrix.R

Rev 3387 – more [tcrossprod(), Matrix, dpo*] tests

maechler — Tue, 08 Aug 2006 16:27:59 +0000

maechler – 2 file(s) modified
more [tcrossprod(), Matrix, dpo*] tests

~ /trunk/Matrix/tests/dpoMatrix.R
~ /trunk/Matrix/tests/matprod.R

Rev 3378 – use speedier crossprod() for "dgC" - still slower than t(.) ...

maechler — Mon, 07 Aug 2006 16:51:14 +0000

maechler – 6 file(s) modified
use speedier crossprod() for "dgC" - still slower than t(.) %*% .

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/KNex.Rd
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/tests/lmer.R

Rev 3375 – library(Matrix) outside if; more graph tests

maechler — Mon, 07 Aug 2006 09:06:17 +0000

maechler – 2 file(s) modified
library(Matrix) *outside* if; more graph tests

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/tests/other-pkgs.R

Rev 3372 – use utils:::tail.matrix directly

maechler — Mon, 07 Aug 2006 08:47:43 +0000

maechler – 3 file(s) modified
use utils:::tail.matrix directly

~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save

Rev 3367 – recreate the S4 Matrix examples at data load time

maechler — Thu, 03 Aug 2006 17:17:55 +0000

maechler – 9 file(s) modified
recreate the S4 Matrix examples at data load time

~ /trunk/Matrix/ChangeLog
+ /trunk/Matrix/data/CAex.R
x /trunk/Matrix/data/CAex.rda
+ /trunk/Matrix/data/KNex.R
x /trunk/Matrix/data/KNex.rda
~ /trunk/Matrix/DESCRIPTION
+ /trunk/Matrix/inst/external/CAex_slots.rda
+ /trunk/Matrix/inst/external/KNex_slots.rda
~ /trunk/Matrix/tests/mm-redo.R

Rev 3366 – add another example

maechler — Thu, 03 Aug 2006 17:17:43 +0000

maechler – 1 file(s) modified
add another example

~ /trunk/Matrix/tests/lmer.R

Rev 3361 – hatTrace and warnings about boundary convergence

bates — Tue, 01 Aug 2006 20:26:45 +0000

bates – 6 file(s) modified
hatTrace and warnings about boundary convergence

~ /trunk/Matrix/ChangeLog
+ /trunk/Matrix/inst/external/test3comp.rda
+ /trunk/Matrix/man/hatTrace.Rd
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/tests/lmer.R

Rev 3340 – many method cleanups; notably some "dgC" -> "Csparse" generaliztations

maechler — Sat, 22 Jul 2006 17:59:53 +0000

maechler – 41 file(s) modified
many method cleanups; notably some "dgC" -> "Csparse" generaliztations

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
+ /trunk/Matrix/man/replValue-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/pedigree.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/tests/bind.R
~ /trunk/Matrix/tests/bind.Rout.save
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 3339 – pass verbose argument to (gl)mer_MCMCsamp() and use it in C ...

maechler — Fri, 21 Jul 2006 08:28:18 +0000

maechler – 6 file(s) modified
pass verbose argument to (gl)mer_MCMCsamp() and use it in C code

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/tests/lmer.R

Rev 3336 – add some SparseM <-> Matrix conversions

maechler — Fri, 21 Jul 2006 06:43:31 +0000

maechler – 4 file(s) modified
add some SparseM <-> Matrix conversions

+ /trunk/Matrix/man/SparseM-conv.Rd
+ /trunk/Matrix/R/SparseM-conv.R
x /trunk/Matrix/tests/graph.R
+ /trunk/Matrix/tests/other-pkgs.R (copied from /trunk/Matrix/tests/graph.R@3334)

Rev 3326 – non0ind() extended for symmetric sparse matrices -> correct printing

maechler — Mon, 17 Jul 2006 13:08:04 +0000

maechler – 4 file(s) modified
non0ind() extended for symmetric sparse matrices -> correct printing

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/tests/simple.R

Rev 3310 – miscellaneous small things, including extended tests; see also ChangeLog

maechler — Mon, 10 Jul 2006 16:08:05 +0000

maechler – 22 file(s) modified
miscellaneous small things, including extended tests; see also ChangeLog

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/lu.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/tests/base-matrix-fun.R
~ /trunk/Matrix/tests/bind.R
+ /trunk/Matrix/tests/bind.Rout.save
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 3246 – fix segfault from wrong formula

maechler — Mon, 19 Jun 2006 15:36:44 +0000

maechler – 2 file(s) modified
fix segfault from wrong formula

~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/tests/lmer.R

Rev 3218 – implemented all 4 of {rowSums(), ... colMeans()}

maechler — Thu, 08 Jun 2006 09:30:21 +0000

maechler – 19 file(s) modified
implemented all 4 of {rowSums(), ... colMeans()}

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/base-matrix-fun.R
~ /trunk/Matrix/TODO

Rev 3209 – R >= 2.4 needs more hacking for base::as.matrix assignment

maechler — Tue, 06 Jun 2006 14:48:37 +0000

maechler – 2 file(s) modified
R >= 2.4 needs more hacking for base::as.matrix assignment

~ /trunk/Matrix/R/zzz.R
~ /trunk/Matrix/tests/base-matrix-fun.R

Rev 3182 – a few small changes, comments - on the way to ...

maechler — Sat, 27 May 2006 20:12:08 +0000

maechler – 9 file(s) modified
a few small changes, comments - on the way to get to a better "Compare" (group method) approach

~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/tests/lmer.R
~ /trunk/Matrix/tests/validObj.R

Rev 3149 – some "sparse <-> graph" updates

maechler — Thu, 18 May 2006 06:47:09 +0000

maechler – 7 file(s) modified
some "sparse <-> graph" updates

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/dgTMatrix.c
~ /trunk/Matrix/src/dgTMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/graph.R

Rev 3148 – cosmetic, comments

maechler — Thu, 18 May 2006 06:44:43 +0000

maechler – 4 file(s) modified
cosmetic, comments

~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/lmer.R

Rev 3147 – a few more tests

maechler — Thu, 18 May 2006 06:43:29 +0000

maechler – 2 file(s) modified
a few more tests

~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save

Rev 3139 – single argument [t]crossprod now returns a symmetric matrix

bates — Tue, 16 May 2006 19:12:13 +0000

bates – 6 file(s) modified
single argument [t]crossprod now returns a symmetric matrix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/tests/matprod.R

Rev 3078 – tT -> tC; and diagU2N() for solve()

maechler — Wed, 19 Apr 2006 09:17:14 +0000

maechler – 6 file(s) modified
tT -> tC; and diagU2N() for solve(<dtC>)

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 3060 – fix for %*%

maechler — Wed, 12 Apr 2006 20:31:18 +0000

maechler – 4 file(s) modified
fix for <sparse> %*% <integer_matrix>

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/TODO

Rev 3034 – coercions from dgC to triangular (dtC) and symmetric (dsC), etc

maechler — Thu, 30 Mar 2006 19:56:09 +0000

maechler – 17 file(s) modified
coercions from dgC to triangular (dtC) and symmetric (dsC), etc

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/simple.R

Rev 3027 – Propagate DimNames in dsyMatrix_as_dspMatrix

bates — Thu, 23 Mar 2006 15:16:17 +0000

bates – 5 file(s) modified
Propagate DimNames in dsyMatrix_as_dspMatrix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/tests/lmer.R
~ /trunk/Matrix/TODO

Rev 2363 – oops; was added accidentally

maechler — Wed, 15 Mar 2006 17:44:21 +0000

maechler – 1 file(s) modified
oops; was added accidentally

x /trunk/Matrix/tests/dpoMatrix.Rout.save

Rev 2362 – put "mm" and "y" datasets into list "KNex" and change ...

maechler — Wed, 15 Mar 2006 17:43:34 +0000

maechler – 20 file(s) modified
put "mm" and "y" datasets into list "KNex" and change the docu, examples, tests, and one vignette accordingly;
ready for release of 0.995-6

~ /trunk/Matrix/ChangeLog
+ /trunk/Matrix/data/KNex.rda
x /trunk/Matrix/data/mm.rda
x /trunk/Matrix/data/y.rda
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/inst/doc/Comparisons.Rnw
~ /trunk/Matrix/man/dCholCMatrix-class.Rd
~ /trunk/Matrix/man/externalFormats.Rd
+ /trunk/Matrix/man/KNex.Rd (copied from /trunk/Matrix/man/mm.Rd@2360)
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
x /trunk/Matrix/man/mm.Rd
x /trunk/Matrix/man/y.Rd
~ /trunk/Matrix/tests/base-matrix-fun.R
~ /trunk/Matrix/tests/dg_Matrix.R
+ /trunk/Matrix/tests/dpoMatrix.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/mm-redo.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO