The R Project SVN R-packages

Rev

Show changed files | Details | Compare with Previous | Blame | RSS feed

Filtering Options

Rev Age Author Path Log message Diff
3543 7268 d 0 h maechler /branches/Matrix-for-R-2.3.x/ branching an "old-R" compatible version of Matrix  
3448 7280 d 2 h bates /trunk/Matrix/src/ Fix memory leak caught by valgrind.  
3431 7283 d 0 h maechler /trunk/Matrix/src/ using R_VERSION (useful more generally) - does not help  
3394 7290 d 22 h bates /trunk/Matrix/src/ Adjust glmer_init for S4SXP  
3361 7299 d 21 h bates /trunk/Matrix/ hatTrace and warnings about boundary convergence  
3354 7300 d 18 h bates /trunk/Matrix/ Add hatTrace function  
3339 7311 d 9 h maechler /trunk/Matrix/ pass verbose argument to (gl)mer_MCMCsamp() and use it in C code  
3331 7314 d 22 h bates /trunk/Matrix/ Add coersion from CHMfactor to sparseMatrix  
3290 7326 d 2 h bates /trunk/Matrix/src/ mcmcsamp for glmer objects  
3227 7351 d 23 h bates /trunk/Matrix/src/ Re-aligned deviance column in mcmcsamp output (and no longer use index of -1); added calculations of mer_hat_trace  
3222 7354 d 1 h bates /trunk/Matrix/src/ Many changes in mcmcsample and other places  
3180 7365 d 21 h bates /trunk/Matrix/ Add isNested and for an identity permutation for nested grouping factors  
3171 7370 d 9 h maechler /trunk/Matrix/src/ make compilable  
3170 7370 d 19 h bates /trunk/Matrix/src/ Begin isNested  
3169 7370 d 22 h bates /trunk/Matrix/src/ Add an implementation of mer_denom_df  
3153 7373 d 5 h bates /trunk/Matrix/ Initial denom_df attempt  
3054 7414 d 17 h bates /trunk/Matrix/ Added qqmath method for ranef.lmer and postVar for ranef methods  
2366 7435 d 23 h bates /trunk/Matrix/src/ Trivial change in documentation of a function  
2348 7447 d 6 h maechler /trunk/Matrix/ lmer(): dropped non-sensical 'x' and 'y' arguments  
2277 7474 d 17 h bates /trunk/Matrix/ Fix case of cbind(successes, failures) for lmer fitting a GLMM (see Changelog)  
2246 7491 d 3 h bates /trunk/Matrix/src/ Fixing memory leaks  
2224 7494 d 16 h bates /trunk/Matrix/ Over to Martin for release 0.995-2  
2212 7495 d 17 h bates /trunk/Matrix/ Munging the data frame  
2194 7499 d 17 h bates /trunk/Matrix/ Move glmer reweighting to internal_update_ZXy; rearrange the deck chairs  
2187 7500 d 17 h bates /trunk/Matrix/ Remove redundant registration of dspMatrix_trf; incorporate wts and wrkres slots in mer class  
2174 7501 d 14 h bates /trunk/Matrix/src/ Switch to supernodal Cholesky representation of mer objects  
1990 7564 d 18 h bates /trunk/Matrix/src/ typo  
1925 7593 d 23 h bates /trunk/Matrix/ Tidying up  
1917 7595 d 3 h bates /trunk/Matrix/ More mer2 modifications  
1916 7597 d 19 h bates /trunk/Matrix/ mer2_initial  
1897 7598 d 3 h bates /trunk/Matrix/src/ Added a factorization in mer2_create so the permutation could be applied to Z'X and Z'y  
1896 7598 d 17 h bates /trunk/Matrix/src/ Permutation of Z'X and Z'y in mer2_factor  
1894 7599 d 14 h bates /trunk/Matrix/ More updates on lmer - still not quite correct  
1876 7602 d 15 h bates /trunk/Matrix/ Modifications to mer2  
1851 7608 d 16 h bates /trunk/Matrix/ Temporary function mer2 to experiment with CHOLMOD-based mixed-effects  
1798 7627 d 20 h bates /trunk/Matrix/src/ Remove unnecessary declaration  
1792 7629 d 16 h bates /trunk/Matrix/ Add "start" argument to lmer  
1779 7634 d 3 h bates /trunk/Matrix/ New simulate method for lmer objects  
1770 7636 d 2 h bates /trunk/Matrix/ Added simulate generic and method  
1769 7638 d 3 h bates /trunk/Matrix/ Add simulate method for lmer