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Rev Age Author Path Log message Diff
3543 7268 d 1 h maechler /branches/Matrix-for-R-2.3.x/ branching an "old-R" compatible version of Matrix  
3522 7271 d 15 h bates /trunk/Matrix/src/ housekeeping  
3514 7272 d 18 h bates /trunk/Matrix/src/ Remove vestigial classed argument for dsCMatrix_matrix_solve  
3508 7274 d 2 h bates /trunk/Matrix/ Added triu, tril and band for ddenseMatrix objects.  
3505 7275 d 1 h bates /trunk/Matrix/src/ Added initial version of dgeMatrix_band but may change design  
3502 7275 d 14 h bates /trunk/Matrix/ Move methods to the CsparseMatrix class  
3501 7275 d 21 h maechler /trunk/Matrix/ use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones  
3488 7277 d 0 h bates /trunk/Matrix/ Use dup_mMatrix_as_dgeMatrix  
3484 7277 d 2 h maechler /trunk/Matrix/ eliminate classed argument from dup_mM*() and dependencies  
3475 7277 d 21 h bates /trunk/Matrix/ Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead  
3468 7278 d 19 h bates /trunk/Matrix/src/ Comment out vestigial functions  
3460 7279 d 1 h bates /trunk/Matrix/src/ register dup_mMatrix_as_dgeMatrix for coercions.  
3438 7281 d 15 h bates /trunk/Matrix/ Added methods for sparseQR for qr.qy, qr.qty, qr.coef, qr.resid and qr.fitted  
3422 7283 d 19 h bates /trunk/Matrix/ Added solve methods for dgCMatrix and documentation  
3420 7284 d 4 h bates /trunk/Matrix/ add sparse LU and QR decompositions  
3415 7285 d 19 h bates /trunk/Matrix/ Adding dgCMatrix_{lusol,qrsol,QR} but QR still not working  
3410 7286 d 0 h maechler /trunk/Matrix/ eliminate sCMatrix_to_gCMatrix now that we have (almost identical) Csparse_symmetric_to_general  
3406 7286 d 21 h bates /trunk/Matrix/src/ Utilities Csparse_to_logical and Csparse_symmetric_to_general  
3404 7286 d 23 h bates /trunk/Matrix/ Use CHOLMOD code for general methods at CsparseMatrix, TsparseMatrix, denseMatrix or matrix level when possible  
3401 7289 d 0 h bates /trunk/Matrix/ Generalize conversions  
3339 7311 d 9 h maechler /trunk/Matrix/ pass verbose argument to (gl)mer_MCMCsamp() and use it in C code  
3331 7314 d 23 h bates /trunk/Matrix/ Add coersion from CHMfactor to sparseMatrix  
3309 7322 d 3 h maechler /trunk/Matrix/ add lgCMatrix_diag()  
3291 7326 d 3 h bates /trunk/Matrix/src/ mcmcsamp for glmer objects  
3227 7352 d 0 h bates /trunk/Matrix/src/ Re-aligned deviance column in mcmcsamp output (and no longer use index of -1); added calculations of mer_hat_trace  
3180 7365 d 22 h bates /trunk/Matrix/ Add isNested and for an identity permutation for nested grouping factors  
3153 7373 d 6 h bates /trunk/Matrix/ Initial denom_df attempt  
3149 7375 d 11 h maechler /trunk/Matrix/ some "sparse <-> graph" updates  
3134 7377 d 19 h bates /trunk/Matrix/ Generics lowerTriMatrix and upperTriMatrix and C function Csparse_band  
3111 7393 d 2 h bates /trunk/Matrix/ Add chol method for pedigree objects  
3070 7408 d 5 h bates /trunk/Matrix/ Add CSparse-based solve methods for dtCMatrix class  
3065 7409 d 20 h bates /trunk/Matrix/src/ C code for inverse of sparse, unit, lower triangular matrices (pattern only at present)  
3054 7414 d 18 h bates /trunk/Matrix/ Added qqmath method for ranef.lmer and postVar for ranef methods  
2304 7461 d 19 h bates /trunk/Matrix/ Used cholmod_vertcat and cholmod_horzcat for cbind2 and rbind2 in the dsparseMatrix virtual class  
2265 7487 d 18 h bates /trunk/Matrix/ Use coersion for transpose of dtCMatrix class  
2263 7488 d 3 h bates /trunk/Matrix/ Move dtTMatrix_to_dtCMatrix to CHOLMOD code  
2254 7490 d 2 h maechler /trunk/Matrix/ make*_(triangular|symmetric) : now for ldense* as well  
2200 7497 d 21 h bates /trunk/Matrix/ Removing rcond slot from Matrix objects  
2197 7498 d 18 h maechler /trunk/Matrix/src/ new dMatrix_validate and dense_nonpacked_validate  
2194 7499 d 18 h bates /trunk/Matrix/ Move glmer reweighting to internal_update_ZXy; rearrange the deck chairs