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3543 7268 d 5 h maechler /branches/Matrix-for-R-2.3.x/ branching an "old-R" compatible version of Matrix  
/branches/Matrix-for-R-2.3.x
3518 7272 d 5 h bates /trunk/Matrix/src/ Define and use class_P and mMatrix_as_dgeMatrix  
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/cs_utils.c
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dsCMatrix.c
3502 7275 d 18 h bates /trunk/Matrix/ Move methods to the CsparseMatrix class  
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dtTMatrix.R
/trunk/Matrix/R/lgCMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/ltCMatrix.R
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lgCMatrix.c
/trunk/Matrix/src/lgCMatrix.h
/trunk/Matrix/src/lgTMatrix.c
/trunk/Matrix/src/lgTMatrix.h
/trunk/Matrix/src/lsCMatrix.c
/trunk/Matrix/src/lsCMatrix.h
/trunk/Matrix/src/ltCMatrix.c
3466 7278 d 23 h bates /trunk/Matrix/src/ use diag_P and uplo_P macros  
/trunk/Matrix/src/Csparse.c
3410 7286 d 3 h maechler /trunk/Matrix/ eliminate sCMatrix_to_gCMatrix now that we have (almost identical) Csparse_symmetric_to_general  
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsCMatrix.h
/trunk/Matrix/src/init.c
3406 7287 d 0 h bates /trunk/Matrix/src/ Utilities Csparse_to_logical and Csparse_symmetric_to_general  
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/init.c
3404 7287 d 3 h bates /trunk/Matrix/ Use CHOLMOD code for general methods at CsparseMatrix, TsparseMatrix, denseMatrix or matrix level when possible  
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/init.c
3401 7289 d 4 h bates /trunk/Matrix/ Generalize conversions  
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/Tsparse.c
/trunk/Matrix/src/Tsparse.h
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/chm_common.h
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgTMatrix.c
/trunk/Matrix/src/dgTMatrix.h
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/init.c
3388 7293 d 4 h bates /trunk/Matrix/ crossprod and tcrossprod for TsparseMatrix  
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/src/Csparse.c
3380 7293 d 7 h bates /trunk/Matrix/src/ tcrossprod result has stype = -1 (perhaps this should change).  
/trunk/Matrix/src/Csparse.c
3379 7294 d 3 h bates /trunk/Matrix/ Set stype in C function Csparse_crossprod and avoid R-level conversions  
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/src/Csparse.c
3139 7377 d 2 h bates /trunk/Matrix/ single argument [t]crossprod now returns a symmetric matrix  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/tests/matprod.R
3134 7377 d 23 h bates /trunk/Matrix/ Generics lowerTriMatrix and upperTriMatrix and C function Csparse_band  
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/init.c
2304 7461 d 23 h bates /trunk/Matrix/ Used cholmod_vertcat and cholmod_horzcat for cbind2 and rbind2 in the dsparseMatrix virtual class  
/trunk/Matrix/INDEX
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/init.c
2172 7501 d 18 h bates /trunk/Matrix/src/ Change malloc to Calloc in chm_common.c and correspondingly free to Free there and elsewhere  
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Tsparse.c
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/chm_common.h
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dpoMatrix.c
/trunk/Matrix/src/dsCMatrix.c
2030 7546 d 5 h bates /trunk/Matrix/src/ Added crossprod method for Csparse and dense  
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/init.c
2022 7550 d 23 h bates /trunk/Matrix/ Matrix multiplication and coersion at higher level  
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/Makefile
/trunk/Matrix/src/Makefile.win
/trunk/Matrix/src/Tsparse.c
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dense.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgTMatrix.c
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/init.c
1986 7565 d 6 h maechler /trunk/Matrix/src/ use free() to clean up after as_cholmod_*() since these use malloc() - as in Brian`s patch  
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Tsparse.c
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dsCMatrix.c
1870 7604 d 1 h maechler /trunk/Matrix/src/ check return value from cholmod_aat() {fix seg.fault}  
/trunk/Matrix/src/Csparse.c
1838 7616 d 0 h bates /trunk/Matrix/src/ corrected error message  
/trunk/Matrix/src/Csparse.c
1836 7616 d 0 h bates /trunk/Matrix/ crossprod and tcrossprod for Tsparse  
/trunk/Matrix/INDEX
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/init.c
/trunk/Matrix/tests/matprod.R
1833 7616 d 2 h maechler /trunk/Matrix/ too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for sparse ones; more "s/gTMatrix/TsparseMatrix/" fixes; quite a few more tests, incl some for *all* classes  
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lsparseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/inst/test-tools.R
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/Xtrct-methods.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/dsyMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/bind.R
/trunk/Matrix/tests/dgTMatrix.R
/trunk/Matrix/tests/group-methods.R
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/matprod.R
1831 7616 d 22 h bates /trunk/Matrix/ More progress on incorporating CHOLMOD - still not passing CMD check  
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/gTMatrix.R
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/lsparseMatrix.R
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/init.c
/trunk/Matrix/tests/dgTMatrix.R
1830 7617 d 5 h bates /trunk/Matrix/ Added CHOLMOD-based C functions. Still need methods defined in R and some error checking  
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/Tsparse.c
/trunk/Matrix/src/Tsparse.h
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/src/Pattern.c
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/UMFPACK/Makefile
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/chm_common.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgTMatrix.c
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsCMatrix.h
/trunk/Matrix/src/init.c