R-packages – /branches/Matrix-for-R-2.3.x/src/

Rev 3543 – branching an "old-R" compatible version of Matrix

maechler — Sat, 02 Sep 2006 16:36:14 +0000

maechler – 1 file(s) modified
branching an "old-R" compatible version of Matrix

+ /branches/Matrix-for-R-2.3.x (copied from /trunk/Matrix@3542)

Rev 3540 – * empty log message *

bates — Fri, 01 Sep 2006 23:16:49 +0000

bates – 1 file(s) modified
*** empty log message ***

~ /trunk/Matrix/src/dense.c

Rev 3532 – Remove unused name in ddense_band

bates — Fri, 01 Sep 2006 13:30:52 +0000

bates – 1 file(s) modified
Remove unused name in ddense_band

~ /trunk/Matrix/src/dense.c

Rev 3523 – housekeeping

bates — Wed, 30 Aug 2006 03:35:53 +0000

bates – 1 file(s) modified
housekeeping

~ /trunk/Matrix/src/dgTMatrix.c

Rev 3522 – housekeeping

bates — Wed, 30 Aug 2006 03:05:59 +0000

bates – 1 file(s) modified
housekeeping

~ /trunk/Matrix/src/init.c

Rev 3521 – housekeeping

bates — Wed, 30 Aug 2006 03:05:06 +0000

bates – 1 file(s) modified
housekeeping

~ /trunk/Matrix/src/dsyMatrix.h

Rev 3520 – Promotion of %*% and solve to RHS of ddenseMatrix

bates — Tue, 29 Aug 2006 22:30:57 +0000

bates – 25 file(s) modified
Promotion of %*% and solve to RHS of ddenseMatrix

~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtpMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dspMatrix.h
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dsyMatrix.h
~ /trunk/Matrix/src/dtpMatrix.c
~ /trunk/Matrix/src/dtpMatrix.h
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/Mutils.h

Rev 3518 – Define and use class_P and mMatrix_as_dgeMatrix

bates — Tue, 29 Aug 2006 16:17:27 +0000

bates – 7 file(s) modified
Define and use class_P and mMatrix_as_dgeMatrix

~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 3514 – Remove vestigial classed argument for dsCMatrix_matrix_solve

bates — Tue, 29 Aug 2006 00:04:48 +0000

bates – 3 file(s) modified
Remove vestigial classed argument for dsCMatrix_matrix_solve

~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3508 – Added triu, tril and band for ddenseMatrix objects.

bates — Sun, 27 Aug 2006 16:16:35 +0000

bates – 8 file(s) modified
Added triu, tril and band for ddenseMatrix objects.

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dense.h
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3505 – Added initial version of dgeMatrix_band but may change design

bates — Sat, 26 Aug 2006 17:25:57 +0000

bates – 3 file(s) modified
Added initial version of dgeMatrix_band but may change design

~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3503 – Remove sections of code that are no longer used

bates — Sat, 26 Aug 2006 13:00:36 +0000

bates – 8 file(s) modified
Remove sections of code that are no longer used

~ /trunk/Matrix/src/dgTMatrix.h
~ /trunk/Matrix/src/dsTMatrix.c
~ /trunk/Matrix/src/dsTMatrix.h
~ /trunk/Matrix/src/dtTMatrix.h
~ /trunk/Matrix/src/lgCMatrix.c
~ /trunk/Matrix/src/lgCMatrix.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 3502 – Move methods to the CsparseMatrix class

bates — Sat, 26 Aug 2006 03:29:36 +0000

bates – 21 file(s) modified
Move methods to the CsparseMatrix class

~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lgCMatrix.c
~ /trunk/Matrix/src/lgCMatrix.h
~ /trunk/Matrix/src/lgTMatrix.c
~ /trunk/Matrix/src/lgTMatrix.h
~ /trunk/Matrix/src/lsCMatrix.c
~ /trunk/Matrix/src/lsCMatrix.h
~ /trunk/Matrix/src/ltCMatrix.c

Rev 3501 – use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones

maechler — Fri, 25 Aug 2006 20:38:36 +0000

maechler – 18 file(s) modified
use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/ddiMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtpMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c

Rev 3493 – Add ddiMatrix,dtpMatrix, dspMatrix and dppMatrix conversions. Remove no-longer-used functions.

bates — Thu, 24 Aug 2006 21:59:49 +0000

bates – 2 file(s) modified
Add ddiMatrix,dtpMatrix, dspMatrix and dppMatrix conversions. Remove no-longer-used functions.

~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 3492 – Use dup_mMatrix_as_dgeMatrix

bates — Thu, 24 Aug 2006 18:34:18 +0000

bates – 2 file(s) modified
Use dup_mMatrix_as_dgeMatrix

~ /trunk/Matrix/src/dgTMatrix.h
~ /trunk/Matrix/src/Mutils.c

Rev 3490 – Replaced R_ldl etc. by CHOLMOD functions

bates — Thu, 24 Aug 2006 18:23:36 +0000

bates – 1 file(s) modified
Replaced R_ldl etc. by CHOLMOD functions

~ /trunk/Matrix/src/DEPS.mkf

Rev 3489 – Replaced R_ldl etc. by CHOLMOD functions

bates — Thu, 24 Aug 2006 18:23:11 +0000

bates – 1 file(s) modified
Replaced R_ldl etc. by CHOLMOD functions

~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 3488 – Use dup_mMatrix_as_dgeMatrix

bates — Thu, 24 Aug 2006 18:22:39 +0000

bates – 12 file(s) modified
Use dup_mMatrix_as_dgeMatrix

~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/sparseQR.R
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsTMatrix.c
~ /trunk/Matrix/src/dsTMatrix.h
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/src/dtTMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lsCMatrix.c
~ /trunk/Matrix/src/lsCMatrix.h

Rev 3485 – Replaced by CHOLMOD functions

bates — Thu, 24 Aug 2006 18:19:36 +0000

bates – 8 file(s) modified
Replaced by CHOLMOD functions

x /trunk/Matrix/src/dCholCMatrix.c
x /trunk/Matrix/src/dCholCMatrix.h
x /trunk/Matrix/src/lCholCMatrix.c
x /trunk/Matrix/src/lCholCMatrix.h
x /trunk/Matrix/src/Metis_utils.c
x /trunk/Matrix/src/Metis_utils.h
x /trunk/Matrix/src/R_ldl.c
x /trunk/Matrix/src/R_ldl.h

Rev 3484 – eliminate classed argument from dup_mM*() and dependencies

maechler — Thu, 24 Aug 2006 16:21:18 +0000

maechler – 21 file(s) modified
eliminate classed argument from dup_mM*() and dependencies

~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/dppMatrix.c
~ /trunk/Matrix/src/dppMatrix.h
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dspMatrix.h
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/dtrMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/sparseQR.c
~ /trunk/Matrix/src/sparseQR.h

Rev 3480 – Paring down dependencies

bates — Wed, 23 Aug 2006 22:13:34 +0000

bates – 1 file(s) modified
Paring down dependencies

~ /trunk/Matrix/src/lmer.h

Rev 3478 – Disable chol methods for lsCMatrix class temporarily; Comment out old ...

bates — Wed, 23 Aug 2006 21:32:30 +0000

bates – 3 file(s) modified
Disable chol methods for lsCMatrix class temporarily; Comment out old code in src/lsCMatrix.[ch]

~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/src/lsCMatrix.c
~ /trunk/Matrix/src/lsCMatrix.h

Rev 3477 – Add Cholesky generic and method for dsCMatrix. Use CHOLMOD ...

bates — Wed, 23 Aug 2006 21:29:22 +0000

bates – 4 file(s) modified
Add Cholesky generic and method for dsCMatrix. Use CHOLMOD for chol().

~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.h

Rev 3476 – Ensure 'factors' slot exists in result of dgeMatrix_crossprod (may need ...

bates — Wed, 23 Aug 2006 21:27:04 +0000

bates – 1 file(s) modified
Ensure 'factors' slot exists in result of dgeMatrix_crossprod (may need to do this in other places).

~ /trunk/Matrix/src/dgeMatrix.c

Rev 3475 – Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead

bates — Wed, 23 Aug 2006 21:25:32 +0000

bates – 4 file(s) modified
Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead

~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 3472 – comments; cosmetic

maechler — Wed, 23 Aug 2006 14:26:19 +0000

maechler – 1 file(s) modified
comments; cosmetic

~ /trunk/Matrix/src/Mutils.c

Rev 3468 – Comment out vestigial functions

bates — Tue, 22 Aug 2006 22:50:38 +0000

bates – 1 file(s) modified
Comment out vestigial functions

~ /trunk/Matrix/src/init.c

Rev 3466 – use diag_P and uplo_P macros

bates — Tue, 22 Aug 2006 22:49:17 +0000

bates – 1 file(s) modified
use diag_P and uplo_P macros

~ /trunk/Matrix/src/Csparse.c

Rev 3465 – Comment out vestigial functions

bates — Tue, 22 Aug 2006 22:47:37 +0000

bates – 1 file(s) modified
Comment out vestigial functions

~ /trunk/Matrix/src/dsCMatrix.h

Rev 3464 – Use CHOLMOD for dsCMatrix_chol and dsCMatrix_matrix_solve.

bates — Tue, 22 Aug 2006 22:46:07 +0000

bates – 1 file(s) modified
Use CHOLMOD for dsCMatrix_chol and dsCMatrix_matrix_solve.

~ /trunk/Matrix/src/dsCMatrix.c

Rev 3463 – Move check_class to Mutils.h and some bug fixes

bates — Tue, 22 Aug 2006 22:44:14 +0000

bates – 2 file(s) modified
Move check_class to Mutils.h and some bug fixes

~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/Mutils.h

Rev 3462 – Misunderstood effect of make_d_matrix_triangular and make_d_matrix_symmetric. Now fixed. ...

bates — Tue, 22 Aug 2006 18:06:54 +0000

bates – 1 file(s) modified
Misunderstood effect of make_d_matrix_triangular and make_d_matrix_symmetric. Now fixed. Use _NOT_A_CLASS_ instead of dmatrix for the name of the class that should not occur.

~ /trunk/Matrix/src/Mutils.c

Rev 3460 – register dup_mMatrix_as_dgeMatrix for coercions.

bates — Tue, 22 Aug 2006 17:25:24 +0000

bates – 1 file(s) modified
register dup_mMatrix_as_dgeMatrix for coercions.

~ /trunk/Matrix/src/init.c

Rev 3459 – updated for general types of classed Matrices, matrices or numeric ...

bates — Tue, 22 Aug 2006 17:23:39 +0000

bates – 1 file(s) modified
updated for general types of classed Matrices, matrices or numeric or logical vectors.

~ /trunk/Matrix/src/Mutils.c

Rev 3454 – Use dup_mMatrix_as_dgeMatrix

bates — Tue, 22 Aug 2006 01:00:03 +0000

bates – 5 file(s) modified
Use dup_mMatrix_as_dgeMatrix

~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dppMatrix.c
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dtrMatrix.c

Rev 3453 – update validation tests, fix -Wall warnings

bates — Tue, 22 Aug 2006 00:57:22 +0000

bates – 1 file(s) modified
update validation tests, fix -Wall warnings

~ /trunk/Matrix/src/sparseQR.c

Rev 3451 – rename class "LU" to "denseLU" and make "LU" virtual

maechler — Mon, 21 Aug 2006 15:24:47 +0000

maechler – 12 file(s) modified
rename class "LU" to "denseLU" and make "LU" virtual

~ /trunk/Matrix/man/LU-class.Rd
~ /trunk/Matrix/man/lu.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/LU.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/sparseQR.R
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/tests/other-pkgs.R
x /trunk/Matrix/tests/sparseQR.R

Rev 3448 – Fix memory leak caught by valgrind.

bates — Mon, 21 Aug 2006 14:38:50 +0000

bates – 1 file(s) modified
Fix memory leak caught by valgrind.

~ /trunk/Matrix/src/lmer.c

Rev 3441 – Fix thinko in sparseQR_resid_fitted

bates — Sun, 20 Aug 2006 16:14:07 +0000

bates – 1 file(s) modified
Fix thinko in sparseQR_resid_fitted

~ /trunk/Matrix/src/sparseQR.c

R-packages – /branches/Matrix-for-R-2.3.x/src/

Rev 3543 – branching an "old-R" compatible version of Matrix

Rev 3540 – *** empty log message ***

Rev 3532 – Remove unused name in ddense_band

Rev 3523 – housekeeping

Rev 3522 – housekeeping

Rev 3521 – housekeeping

Rev 3520 – Promotion of %*% and solve to RHS of ddenseMatrix

Rev 3518 – Define and use class_P and mMatrix_as_dgeMatrix

Rev 3514 – Remove vestigial classed argument for dsCMatrix_matrix_solve

Rev 3508 – Added triu, tril and band for ddenseMatrix objects.

Rev 3505 – Added initial version of dgeMatrix_band but may change design

Rev 3503 – Remove sections of code that are no longer used

Rev 3502 – Move methods to the CsparseMatrix class

Rev 3501 – use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones

Rev 3493 – Add ddiMatrix,dtpMatrix, dspMatrix and dppMatrix conversions. Remove no-longer-used functions.

Rev 3492 – Use dup_mMatrix_as_dgeMatrix

Rev 3490 – Replaced R_ldl etc. by CHOLMOD functions

Rev 3489 – Replaced R_ldl etc. by CHOLMOD functions

Rev 3488 – Use dup_mMatrix_as_dgeMatrix

Rev 3485 – Replaced by CHOLMOD functions

Rev 3484 – eliminate classed argument from dup_mM*() and dependencies

Rev 3480 – Paring down dependencies

Rev 3478 – Disable chol methods for lsCMatrix class temporarily; Comment out old ...

Rev 3477 – Add Cholesky generic and method for dsCMatrix. Use CHOLMOD ...

Rev 3476 – Ensure 'factors' slot exists in result of dgeMatrix_crossprod (may need ...

Rev 3475 – Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead

Rev 3472 – comments; cosmetic

Rev 3468 – Comment out vestigial functions

Rev 3466 – use diag_P and uplo_P macros

Rev 3465 – Comment out vestigial functions

Rev 3464 – Use CHOLMOD for dsCMatrix_chol and dsCMatrix_matrix_solve.

Rev 3463 – Move check_class to Mutils.h and some bug fixes

Rev 3462 – Misunderstood effect of make_d_matrix_triangular and make_d_matrix_symmetric. Now fixed. ...

Rev 3460 – register dup_mMatrix_as_dgeMatrix for coercions.

Rev 3459 – updated for general types of classed Matrices, matrices or numeric ...

Rev 3454 – Use dup_mMatrix_as_dgeMatrix

Rev 3453 – update validation tests, fix -Wall warnings

Rev 3451 – rename class "LU" to "denseLU" and make "LU" virtual

Rev 3448 – Fix memory leak caught by valgrind.

Rev 3441 – Fix thinko in sparseQR_resid_fitted

Rev 3540 – * empty log message *