R-packages – /branches/Matrix-for-R-2.3.x/man/lmer.Rd

Rev 3543 – branching an "old-R" compatible version of Matrix

maechler — Sat, 02 Sep 2006 16:36:14 +0000

maechler – 1 file(s) modified
branching an "old-R" compatible version of Matrix

+ /branches/Matrix-for-R-2.3.x (copied from /trunk/Matrix@3542)

Rev 3365 – add data(sleepstudy), needed because of LazyData: no

maechler — Thu, 03 Aug 2006 17:15:31 +0000

maechler – 8 file(s) modified
add data(sleepstudy), needed because of LazyData: no

~ /trunk/Matrix/man/fixef.Rd
~ /trunk/Matrix/man/hatTrace.Rd
~ /trunk/Matrix/man/lmer-class.Rd
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/man/mcmcsamp.Rd
~ /trunk/Matrix/man/ranef.Rd
~ /trunk/Matrix/man/sleepstudy.Rd
~ /trunk/Matrix/man/VarCorr.Rd

Rev 3175 – start massive use of \linkS4class{.}

maechler — Wed, 24 May 2006 14:44:59 +0000

maechler – 55 file(s) modified
start massive use of \linkS4class{.}

~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CAex.Rd
~ /trunk/Matrix/man/CHMfactor-class.Rd
~ /trunk/Matrix/man/Cholesky-class.Rd
~ /trunk/Matrix/man/compMatrix-class.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/dCholCMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/ddiMatrix-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dgRMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/Diagonal.Rd
~ /trunk/Matrix/man/diagonalMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/dsRMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/dtpMatrix-class.Rd
~ /trunk/Matrix/man/dtRMatrix-class-def.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/man/expm.Rd
~ /trunk/Matrix/man/generalMatrix-class.Rd
~ /trunk/Matrix/man/Hilbert.Rd
~ /trunk/Matrix/man/index-class.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/ldiMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lmer-class.Rd
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/lsyMatrix-class.Rd
~ /trunk/Matrix/man/ltrMatrix-class.Rd
~ /trunk/Matrix/man/LU-class.Rd
~ /trunk/Matrix/man/lu.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/man/mcmcsamp.Rd
~ /trunk/Matrix/man/pedigree-class.Rd
~ /trunk/Matrix/man/pedigree.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/man/RsparseMatrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/symmetricMatrix-class.Rd
~ /trunk/Matrix/man/tcrossprod.Rd
~ /trunk/Matrix/man/triangularMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/man/unused-classes.Rd
~ /trunk/Matrix/man/VarCorr.Rd

Rev 2347 – lmer(): non-trivial summary() method -> summary.*mer classes

maechler — Tue, 07 Mar 2006 11:05:08 +0000

maechler – 7 file(s) modified
lmer(): non-trivial summary() method -> summary.*mer classes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/lmer-class.Rd
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/tests/lmer.R

Rev 2341 – add more docu on (l)mer - methods

maechler — Fri, 03 Mar 2006 18:22:35 +0000

maechler – 3 file(s) modified
add more docu on (l)mer - methods

~ /trunk/Matrix/man/lmer-class.Rd
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/man/VarCorr.Rd

Rev 2277 – Fix case of cbind(successes, failures) for lmer fitting a GLMM ...

bates — Tue, 07 Feb 2006 23:44:07 +0000

bates – 5 file(s) modified
Fix case of cbind(successes, failures) for lmer fitting a GLMM (see Changelog)

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/lmer.c

Rev 2224 – Over to Martin for release 0.995-2

bates — Thu, 19 Jan 2006 00:43:37 +0000

bates – 4 file(s) modified
Over to Martin for release 0.995-2

~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/tests/lmer.R

Rev 2212 – Munging the data frame

bates — Tue, 17 Jan 2006 23:41:36 +0000

bates – 6 file(s) modified
Munging the data frame

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/lmer.c

Rev 2199 – modifications to lmer and related classes

bates — Sun, 15 Jan 2006 19:18:20 +0000

bates – 7 file(s) modified
modifications to lmer and related classes

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/lmer-class.Rd
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/tests/lmer.R

Rev 1792 – Add "start" argument to lmer

bates — Tue, 06 Sep 2005 01:26:11 +0000

bates – 7 file(s) modified
Add "start" argument to lmer

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h

Rev 1707 – added {tolerance} [was not saved at last "commit"]

maechler — Mon, 08 Aug 2005 13:37:04 +0000

maechler – 1 file(s) modified
added {tolerance} [was not saved at last "commit"]

~ /trunk/Matrix/man/lmer.Rd

Rev 1703 – lmer()`s "model = T/F" and control arguments; add comments and ...

maechler — Mon, 08 Aug 2005 08:33:55 +0000

maechler – 2 file(s) modified
lmer()`s "model = T/F" and control arguments; add comments and "FIXME"s

~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/R/lmer.R

Rev 1685 – get rid of \synopsis{} and document missing args

maechler — Sat, 30 Jul 2005 21:34:15 +0000

maechler – 1 file(s) modified
get rid of \synopsis{} and document missing args

~ /trunk/Matrix/man/lmer.Rd

Rev 1679 – Version 0.98-1

bates — Wed, 27 Jul 2005 23:07:04 +0000

bates – 12 file(s) modified
Version 0.98-1

~ /trunk/Matrix/ChangeLog
+ /trunk/Matrix/data/sleepstudy.rda
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/lmer.Rd
+ /trunk/Matrix/man/mcmcsamp.Rd
+ /trunk/Matrix/man/sleepstudy.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/tests/lmer.R

Rev 1618 – add concept for GLMM

maechler — Fri, 01 Jul 2005 10:19:36 +0000

maechler – 1 file(s) modified
add concept for GLMM

~ /trunk/Matrix/man/lmer.Rd

Rev 1583 – Moving lmer to the Matrix package

bates — Wed, 08 Jun 2005 23:47:45 +0000

bates – 15 file(s) modified
Moving lmer to the Matrix package

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
+ /trunk/Matrix/man/BIC.Rd (copied from /trunk/lme4/man/BIC.Rd@1563)
+ /trunk/Matrix/man/fixef.Rd (copied from /trunk/lme4/man/fixef.Rd@1565)
+ /trunk/Matrix/man/lmer-class.Rd (copied from /trunk/lme4/man/lmer-class.Rd@1565)
+ /trunk/Matrix/man/lmer.Rd (copied from /trunk/lme4/man/lmer.Rd@1565)
+ /trunk/Matrix/man/lmerControl.Rd (copied from /trunk/lme4/man/lmerControl.Rd@1563)
+ /trunk/Matrix/man/ranef.Rd (copied from /trunk/lme4/man/ranef.Rd@1563)
+ /trunk/Matrix/man/VarCorr-class.Rd (copied from /trunk/lme4/man/VarCorr-class.Rd@1563)
+ /trunk/Matrix/man/VarCorr.Rd (copied from /trunk/lme4/man/VarCorr.Rd@1563)
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
+ /trunk/Matrix/R/lmer.R (copied from /trunk/lme4/R/lmer.R@1578)
+ /trunk/Matrix/tests/lmer.R (copied from /trunk/lme4/tests/lmer.R@1565)

Rev 1565 – Use the mer class explicitly and combine code for lmer ...

bates — Mon, 06 Jun 2005 15:37:45 +0000

bates – 8 file(s) modified
Use the mer class explicitly and combine code for lmer and glmer creation

~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/man/fixef.Rd
~ /trunk/lme4/man/lmer-class.Rd
~ /trunk/lme4/man/lmer.Rd
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/tests/lmer.R

Rev 1330 – Release of lme_0.95-1

bates — Sat, 02 Apr 2005 14:41:46 +0000

bates – 36 file(s) modified
Release of lme_0.95-1

~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/INDEX
x /trunk/lme4/inst/doc/MixedEffects.Rnw
~ /trunk/lme4/man/BIC.Rd
x /trunk/lme4/man/coefGets.Rd
~ /trunk/lme4/man/fixef.Rd
x /trunk/lme4/man/GLMM-class.Rd
x /trunk/lme4/man/GLMM.Rd
x /trunk/lme4/man/lme-class.Rd
x /trunk/lme4/man/lme.Rd
x /trunk/lme4/man/lmeControl.Rd
~ /trunk/lme4/man/lmer-class.Rd
~ /trunk/lme4/man/lmer.Rd
+ /trunk/lme4/man/lmerControl.Rd (copied from /trunk/lme4/man/lmeControl.Rd@1305)
~ /trunk/lme4/man/lmList-class.Rd
~ /trunk/lme4/man/lmList.Rd
~ /trunk/lme4/man/ranef.Rd
x /trunk/lme4/man/sscCrosstab-class.Rd
x /trunk/lme4/man/sscCrosstab.Rd
x /trunk/lme4/man/ssclme-class.Rd
x /trunk/lme4/man/summary.GLMM-class.Rd
x /trunk/lme4/man/summary.lme-class.Rd
~ /trunk/lme4/man/summary.lmer-class.Rd
~ /trunk/lme4/man/VarCorr.Rd
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/AllGeneric.R
~ /trunk/lme4/R/ccoef.R
x /trunk/lme4/R/GLMM.R
x /trunk/lme4/R/GLMM1.R
x /trunk/lme4/R/lme.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/R/lmList.R
x /trunk/lme4/R/sscCrosstab.R
x /trunk/lme4/R/ssclme.R
~ /trunk/lme4/ToDo

Rev 1165 – Release 0.9-1

bates — Fri, 25 Feb 2005 13:30:34 +0000

bates – 21 file(s) modified
Release 0.9-1

~ /trunk/lme4/ChangeLog
~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/INDEX
~ /trunk/lme4/inst/doc/Implementation.Rnw
~ /trunk/lme4/inst/doc/MixedEffects.Rnw
~ /trunk/lme4/man/GLMM.Rd
~ /trunk/lme4/man/gsummary.Rd
x /trunk/lme4/man/intervals.Rd
~ /trunk/lme4/man/lme.Rd
~ /trunk/lme4/man/lmer-class.Rd
~ /trunk/lme4/man/lmer.Rd
~ /trunk/lme4/man/lmList.Rd
x /trunk/lme4/man/Names.Rd
~ /trunk/lme4/man/pooledSD.Rd
~ /trunk/lme4/man/random.effects.Rd
~ /trunk/lme4/man/VarCorr.Rd
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/AllGeneric.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/R/lmList.R

Rev 936 – Release 0.6-12

bates — Fri, 21 Jan 2005 22:01:21 +0000

bates – 29 file(s) modified
Release 0.6-12

x /trunk/lme4/data/Exam.rda
~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/INDEX
~ /trunk/lme4/inst/doc/Implementation.Rnw
x /trunk/lme4/man/Exam.Rd
x /trunk/lme4/man/groupedData-class.Rd
~ /trunk/lme4/man/groupedData.Rd
~ /trunk/lme4/man/lme-class.Rd
~ /trunk/lme4/man/lme.Rd
+ /trunk/lme4/man/lmer-class.Rd (copied from /trunk/Matrix/man/lmer-class.Rd@896)
~ /trunk/lme4/man/lmer.Rd
~ /trunk/lme4/man/random.effects.Rd
+ /trunk/lme4/man/summary.lmer-class.Rd
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/formulas.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/tests/bdf.R
~ /trunk/lme4/tests/bdf.Rout.save
~ /trunk/lme4/tests/Early.R
~ /trunk/lme4/tests/Early.Rout.save
~ /trunk/lme4/tests/egsingle.R
+ /trunk/lme4/tests/egsingle.Rout.save
~ /trunk/lme4/tests/Hsb82.R
~ /trunk/lme4/tests/Hsb82.Rout.save
~ /trunk/lme4/tests/Pixel.R
~ /trunk/lme4/tests/Pixel.Rout.save
~ /trunk/lme4/tests/ScotsSec.R
~ /trunk/lme4/tests/ScotsSec.Rout.save

Rev 916 – Add the lmer generic and methods

bates — Thu, 13 Jan 2005 19:37:26 +0000

bates – 7 file(s) modified
Add the lmer generic and methods

~ /trunk/lme4/INDEX
+ /trunk/lme4/man/lmer.Rd
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/AllGeneric.R
~ /trunk/lme4/R/formulas.R
~ /trunk/lme4/R/lme.R
~ /trunk/lme4/R/lmer.R