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3543 7268 d 3 h maechler /branches/Matrix-for-R-2.3.x/ branching an "old-R" compatible version of Matrix  
/branches/Matrix-for-R-2.3.x
3365 7298 d 2 h maechler /trunk/Matrix/man/ add data(sleepstudy), needed because of LazyData: no  
/trunk/Matrix/man/VarCorr.Rd
/trunk/Matrix/man/fixef.Rd
/trunk/Matrix/man/hatTrace.Rd
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/man/mcmcsamp.Rd
/trunk/Matrix/man/ranef.Rd
/trunk/Matrix/man/sleepstudy.Rd
3175 7369 d 5 h maechler /trunk/Matrix/man/ start massive use of \linkS4class{.}  
/trunk/Matrix/man/CAex.Rd
/trunk/Matrix/man/CHMfactor-class.Rd
/trunk/Matrix/man/Cholesky-class.Rd
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Diagonal.Rd
/trunk/Matrix/man/Hilbert.Rd
/trunk/Matrix/man/LU-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Matrix.Rd
/trunk/Matrix/man/RsparseMatrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/VarCorr.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/compMatrix-class.Rd
/trunk/Matrix/man/dCholCMatrix-class.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/ddiMatrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgRMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/dpoMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dsRMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/dsyMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/dtRMatrix-class-def.Rd
/trunk/Matrix/man/dtpMatrix-class.Rd
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/man/expm.Rd
/trunk/Matrix/man/generalMatrix-class.Rd
/trunk/Matrix/man/index-class.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/ldiMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/lsyMatrix-class.Rd
/trunk/Matrix/man/ltrMatrix-class.Rd
/trunk/Matrix/man/lu.Rd
/trunk/Matrix/man/mcmcsamp.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/man/pedigree-class.Rd
/trunk/Matrix/man/pedigree.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/man/symmetricMatrix-class.Rd
/trunk/Matrix/man/tcrossprod.Rd
/trunk/Matrix/man/triangularMatrix-class.Rd
/trunk/Matrix/man/unused-classes.Rd
2347 7447 d 8 h maechler /trunk/Matrix/ lmer(): non-trivial summary() method -> summary.*mer classes  
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/tests/lmer.R
2341 7451 d 1 h maechler /trunk/Matrix/man/ add more docu on (l)mer - methods  
/trunk/Matrix/man/VarCorr.Rd
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/lmer.Rd
2277 7474 d 20 h bates /trunk/Matrix/ Fix case of cbind(successes, failures) for lmer fitting a GLMM (see Changelog)  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/lmer.R
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/src/lmer.c
2224 7494 d 19 h bates /trunk/Matrix/ Over to Martin for release 0.995-2  
/trunk/Matrix/R/lmer.R
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/src/lmer.c
/trunk/Matrix/tests/lmer.R
2212 7495 d 20 h bates /trunk/Matrix/ Munging the data frame  
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/src/lmer.c
2199 7498 d 0 h bates /trunk/Matrix/ modifications to lmer and related classes  
/trunk/Matrix/INDEX
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/tests/lmer.R
1792 7629 d 18 h bates /trunk/Matrix/ Add "start" argument to lmer  
/trunk/Matrix/INDEX
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
1707 7658 d 6 h maechler /trunk/Matrix/man/ added {tolerance} [was not saved at last "commit"]  
/trunk/Matrix/man/lmer.Rd
1703 7658 d 11 h maechler /trunk/Matrix/ lmer()`s "model = T/F" and control arguments; add comments and "FIXME"s  
/trunk/Matrix/R/lmer.R
/trunk/Matrix/man/lmer.Rd
1685 7666 d 22 h maechler /trunk/Matrix/man/ get rid of \synopsis{} and document missing args  
/trunk/Matrix/man/lmer.Rd
1679 7669 d 20 h bates /trunk/Matrix/ Version 0.98-1  
/trunk/Matrix/data/sleepstudy.rda
/trunk/Matrix/man/mcmcsamp.Rd
/trunk/Matrix/man/sleepstudy.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/INDEX
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/src/lmer.c
/trunk/Matrix/tests/lmer.R
1618 7696 d 9 h maechler /trunk/Matrix/man/ add concept for GLMM  
/trunk/Matrix/man/lmer.Rd
1583 7718 d 20 h bates /trunk/Matrix/ Moving lmer to the Matrix package  
/trunk/Matrix/R/lmer.R
/trunk/Matrix/man/BIC.Rd
/trunk/Matrix/man/VarCorr-class.Rd
/trunk/Matrix/man/VarCorr.Rd
/trunk/Matrix/man/fixef.Rd
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/man/lmerControl.Rd
/trunk/Matrix/man/ranef.Rd
/trunk/Matrix/tests/lmer.R
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/INDEX
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/AllGeneric.R
1565 7721 d 4 h bates /trunk/lme4/ Use the mer class explicitly and combine code for lmer and glmer creation  
/trunk/lme4/DESCRIPTION
/trunk/lme4/NAMESPACE
/trunk/lme4/R/AllClass.R
/trunk/lme4/R/lmer.R
/trunk/lme4/man/fixef.Rd
/trunk/lme4/man/lmer-class.Rd
/trunk/lme4/man/lmer.Rd
/trunk/lme4/tests/lmer.R
1330 7786 d 5 h bates /trunk/lme4/ Release of lme_0.95-1  
/trunk/lme4/man/lmerControl.Rd
/trunk/lme4/R/GLMM.R
/trunk/lme4/R/GLMM1.R
/trunk/lme4/R/lme.R
/trunk/lme4/R/sscCrosstab.R
/trunk/lme4/R/ssclme.R
/trunk/lme4/inst/doc/MixedEffects.Rnw
/trunk/lme4/man/GLMM-class.Rd
/trunk/lme4/man/GLMM.Rd
/trunk/lme4/man/coefGets.Rd
/trunk/lme4/man/lme-class.Rd
/trunk/lme4/man/lme.Rd
/trunk/lme4/man/lmeControl.Rd
/trunk/lme4/man/sscCrosstab-class.Rd
/trunk/lme4/man/sscCrosstab.Rd
/trunk/lme4/man/ssclme-class.Rd
/trunk/lme4/man/summary.GLMM-class.Rd
/trunk/lme4/man/summary.lme-class.Rd
/trunk/lme4/DESCRIPTION
/trunk/lme4/INDEX
/trunk/lme4/NAMESPACE
/trunk/lme4/R/AllClass.R
/trunk/lme4/R/AllGeneric.R
/trunk/lme4/R/ccoef.R
/trunk/lme4/R/lmList.R
/trunk/lme4/R/lmer.R
/trunk/lme4/ToDo
/trunk/lme4/man/BIC.Rd
/trunk/lme4/man/VarCorr.Rd
/trunk/lme4/man/fixef.Rd
/trunk/lme4/man/lmList-class.Rd
/trunk/lme4/man/lmList.Rd
/trunk/lme4/man/lmer-class.Rd
/trunk/lme4/man/lmer.Rd
/trunk/lme4/man/ranef.Rd
/trunk/lme4/man/summary.lmer-class.Rd
1165 7822 d 6 h bates /trunk/lme4/ Release 0.9-1  
/trunk/lme4/man/Names.Rd
/trunk/lme4/man/intervals.Rd
/trunk/lme4/ChangeLog
/trunk/lme4/DESCRIPTION
/trunk/lme4/INDEX
/trunk/lme4/NAMESPACE
/trunk/lme4/R/AllClass.R
/trunk/lme4/R/AllGeneric.R
/trunk/lme4/R/lmList.R
/trunk/lme4/R/lmer.R
/trunk/lme4/inst/doc/Implementation.Rnw
/trunk/lme4/inst/doc/MixedEffects.Rnw
/trunk/lme4/man/GLMM.Rd
/trunk/lme4/man/VarCorr.Rd
/trunk/lme4/man/gsummary.Rd
/trunk/lme4/man/lmList.Rd
/trunk/lme4/man/lme.Rd
/trunk/lme4/man/lmer-class.Rd
/trunk/lme4/man/lmer.Rd
/trunk/lme4/man/pooledSD.Rd
/trunk/lme4/man/random.effects.Rd
936 7856 d 22 h bates /trunk/lme4/ Release 0.6-12  
/trunk/lme4/man/lmer-class.Rd
/trunk/lme4/man/summary.lmer-class.Rd
/trunk/lme4/tests/egsingle.Rout.save
/trunk/lme4/data/Exam.rda
/trunk/lme4/man/Exam.Rd
/trunk/lme4/man/groupedData-class.Rd
/trunk/lme4/DESCRIPTION
/trunk/lme4/INDEX
/trunk/lme4/NAMESPACE
/trunk/lme4/R/AllClass.R
/trunk/lme4/R/formulas.R
/trunk/lme4/R/lmer.R
/trunk/lme4/inst/doc/Implementation.Rnw
/trunk/lme4/man/groupedData.Rd
/trunk/lme4/man/lme-class.Rd
/trunk/lme4/man/lme.Rd
/trunk/lme4/man/lmer.Rd
/trunk/lme4/man/random.effects.Rd
/trunk/lme4/tests/Early.R
/trunk/lme4/tests/Early.Rout.save
/trunk/lme4/tests/Hsb82.R
/trunk/lme4/tests/Hsb82.Rout.save
/trunk/lme4/tests/Pixel.R
/trunk/lme4/tests/Pixel.Rout.save
/trunk/lme4/tests/ScotsSec.R
/trunk/lme4/tests/ScotsSec.Rout.save
/trunk/lme4/tests/bdf.R
/trunk/lme4/tests/bdf.Rout.save
/trunk/lme4/tests/egsingle.R

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