R-packages – /branches/Matrix-for-R-2.3.x/man/lmer-class.Rd

Rev 3543 – branching an "old-R" compatible version of Matrix

maechler — Sat, 02 Sep 2006 16:36:14 +0000

maechler – 1 file(s) modified
branching an "old-R" compatible version of Matrix

+ /branches/Matrix-for-R-2.3.x (copied from /trunk/Matrix@3542)

Rev 3365 – add data(sleepstudy), needed because of LazyData: no

maechler — Thu, 03 Aug 2006 17:15:31 +0000

maechler – 8 file(s) modified
add data(sleepstudy), needed because of LazyData: no

~ /trunk/Matrix/man/fixef.Rd
~ /trunk/Matrix/man/hatTrace.Rd
~ /trunk/Matrix/man/lmer-class.Rd
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/man/mcmcsamp.Rd
~ /trunk/Matrix/man/ranef.Rd
~ /trunk/Matrix/man/sleepstudy.Rd
~ /trunk/Matrix/man/VarCorr.Rd

Rev 3295 – Updating documentation

bates — Thu, 06 Jul 2006 17:24:01 +0000

bates – 3 file(s) modified
Updating documentation

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/lmer-class.Rd
~ /trunk/Matrix/man/mcmcsamp.Rd

Rev 3175 – start massive use of \linkS4class{.}

maechler — Wed, 24 May 2006 14:44:59 +0000

maechler – 55 file(s) modified
start massive use of \linkS4class{.}

~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CAex.Rd
~ /trunk/Matrix/man/CHMfactor-class.Rd
~ /trunk/Matrix/man/Cholesky-class.Rd
~ /trunk/Matrix/man/compMatrix-class.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/dCholCMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/ddiMatrix-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dgRMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/Diagonal.Rd
~ /trunk/Matrix/man/diagonalMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/dsRMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/dtpMatrix-class.Rd
~ /trunk/Matrix/man/dtRMatrix-class-def.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/man/expm.Rd
~ /trunk/Matrix/man/generalMatrix-class.Rd
~ /trunk/Matrix/man/Hilbert.Rd
~ /trunk/Matrix/man/index-class.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/ldiMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lmer-class.Rd
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/lsyMatrix-class.Rd
~ /trunk/Matrix/man/ltrMatrix-class.Rd
~ /trunk/Matrix/man/LU-class.Rd
~ /trunk/Matrix/man/lu.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/man/mcmcsamp.Rd
~ /trunk/Matrix/man/pedigree-class.Rd
~ /trunk/Matrix/man/pedigree.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/man/RsparseMatrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/symmetricMatrix-class.Rd
~ /trunk/Matrix/man/tcrossprod.Rd
~ /trunk/Matrix/man/triangularMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/man/unused-classes.Rd
~ /trunk/Matrix/man/VarCorr.Rd

Rev 3082 – document qqmath method for ranef.lmer objects

bates — Wed, 19 Apr 2006 14:22:07 +0000

bates – 3 file(s) modified
document qqmath method for ranef.lmer objects

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/lmer-class.Rd

Rev 3038 – fix some \link[-class]{}

maechler — Fri, 31 Mar 2006 09:37:49 +0000

maechler – 3 file(s) modified
fix some \link[*-class]{*}

~ /trunk/Matrix/man/BIC.Rd
~ /trunk/Matrix/man/CAex.Rd
~ /trunk/Matrix/man/lmer-class.Rd

Rev 3025 – update ("coef.lmer" class etc)

maechler — Tue, 21 Mar 2006 17:15:53 +0000

maechler – 1 file(s) modified
update ("coef.lmer" class etc)

~ /trunk/Matrix/man/lmer-class.Rd

Rev 2355 – Update documentation to new lmer class structure

bates — Mon, 13 Mar 2006 13:05:33 +0000

bates – 4 file(s) modified
Update documentation to new lmer class structure

~ /trunk/Matrix/Done
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/lmer-class.Rd
~ /trunk/Matrix/TODO

Rev 2347 – lmer(): non-trivial summary() method -> summary.*mer classes

maechler — Tue, 07 Mar 2006 11:05:08 +0000

maechler – 7 file(s) modified
lmer(): non-trivial summary() method -> summary.*mer classes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/lmer-class.Rd
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/tests/lmer.R

Rev 2341 – add more docu on (l)mer - methods

maechler — Fri, 03 Mar 2006 18:22:35 +0000

maechler – 3 file(s) modified
add more docu on (l)mer - methods

~ /trunk/Matrix/man/lmer-class.Rd
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/man/VarCorr.Rd

Rev 2199 – modifications to lmer and related classes

bates — Sun, 15 Jan 2006 19:18:20 +0000

bates – 7 file(s) modified
modifications to lmer and related classes

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/lmer-class.Rd
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/tests/lmer.R

Rev 2177 – Updating documentation for new version of mer objects

bates — Thu, 12 Jan 2006 03:35:32 +0000

bates – 4 file(s) modified
Updating documentation for new version of mer objects

~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/man/lmer-class.Rd
~ /trunk/Matrix/man/ranef.Rd
~ /trunk/Matrix/man/VarCorr.Rd

Rev 2025 – simulate generic is now in stats package

bates — Sat, 26 Nov 2005 16:29:06 +0000

bates – 2 file(s) modified
simulate generic is now in stats package

~ /trunk/Matrix/man/lmer-class.Rd
x /trunk/Matrix/man/simulate.Rd

Rev 1583 – Moving lmer to the Matrix package

bates — Wed, 08 Jun 2005 23:47:45 +0000

bates – 15 file(s) modified
Moving lmer to the Matrix package

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
+ /trunk/Matrix/man/BIC.Rd (copied from /trunk/lme4/man/BIC.Rd@1563)
+ /trunk/Matrix/man/fixef.Rd (copied from /trunk/lme4/man/fixef.Rd@1565)
+ /trunk/Matrix/man/lmer-class.Rd (copied from /trunk/lme4/man/lmer-class.Rd@1565)
+ /trunk/Matrix/man/lmer.Rd (copied from /trunk/lme4/man/lmer.Rd@1565)
+ /trunk/Matrix/man/lmerControl.Rd (copied from /trunk/lme4/man/lmerControl.Rd@1563)
+ /trunk/Matrix/man/ranef.Rd (copied from /trunk/lme4/man/ranef.Rd@1563)
+ /trunk/Matrix/man/VarCorr-class.Rd (copied from /trunk/lme4/man/VarCorr-class.Rd@1563)
+ /trunk/Matrix/man/VarCorr.Rd (copied from /trunk/lme4/man/VarCorr.Rd@1563)
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
+ /trunk/Matrix/R/lmer.R (copied from /trunk/lme4/R/lmer.R@1578)
+ /trunk/Matrix/tests/lmer.R (copied from /trunk/lme4/tests/lmer.R@1565)

Rev 1565 – Use the mer class explicitly and combine code for lmer ...

bates — Mon, 06 Jun 2005 15:37:45 +0000

bates – 8 file(s) modified
Use the mer class explicitly and combine code for lmer and glmer creation

~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/man/fixef.Rd
~ /trunk/lme4/man/lmer-class.Rd
~ /trunk/lme4/man/lmer.Rd
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/tests/lmer.R

Rev 1523 – Release 0.95-7

bates — Fri, 13 May 2005 15:14:14 +0000

bates – 6 file(s) modified
Release 0.95-7

~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/INDEX
~ /trunk/lme4/man/lmer-class.Rd
x /trunk/lme4/man/summary.lmer-class.Rd
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/lmer.R

Rev 1474 – Add glmer method documentation

bates — Tue, 10 May 2005 01:42:58 +0000

bates – 3 file(s) modified
Add glmer method documentation

~ /trunk/lme4/man/fixef.Rd
~ /trunk/lme4/man/lmer-class.Rd
~ /trunk/lme4/NAMESPACE

Rev 1365 – Release 0.95-5

bates — Fri, 15 Apr 2005 14:37:38 +0000

bates – 6 file(s) modified
Release 0.95-5

~ /trunk/lme4/ChangeLog
~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/man/lmer-class.Rd
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/R/lmList.R

Rev 1345 – Release 0.95-2

bates — Tue, 05 Apr 2005 22:17:04 +0000

bates – 5 file(s) modified
Release 0.95-2

~ /trunk/lme4/ChangeLog
~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/man/lmer-class.Rd
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/lmer.R

Rev 1330 – Release of lme_0.95-1

bates — Sat, 02 Apr 2005 14:41:46 +0000

bates – 36 file(s) modified
Release of lme_0.95-1

~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/INDEX
x /trunk/lme4/inst/doc/MixedEffects.Rnw
~ /trunk/lme4/man/BIC.Rd
x /trunk/lme4/man/coefGets.Rd
~ /trunk/lme4/man/fixef.Rd
x /trunk/lme4/man/GLMM-class.Rd
x /trunk/lme4/man/GLMM.Rd
x /trunk/lme4/man/lme-class.Rd
x /trunk/lme4/man/lme.Rd
x /trunk/lme4/man/lmeControl.Rd
~ /trunk/lme4/man/lmer-class.Rd
~ /trunk/lme4/man/lmer.Rd
+ /trunk/lme4/man/lmerControl.Rd (copied from /trunk/lme4/man/lmeControl.Rd@1305)
~ /trunk/lme4/man/lmList-class.Rd
~ /trunk/lme4/man/lmList.Rd
~ /trunk/lme4/man/ranef.Rd
x /trunk/lme4/man/sscCrosstab-class.Rd
x /trunk/lme4/man/sscCrosstab.Rd
x /trunk/lme4/man/ssclme-class.Rd
x /trunk/lme4/man/summary.GLMM-class.Rd
x /trunk/lme4/man/summary.lme-class.Rd
~ /trunk/lme4/man/summary.lmer-class.Rd
~ /trunk/lme4/man/VarCorr.Rd
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/AllGeneric.R
~ /trunk/lme4/R/ccoef.R
x /trunk/lme4/R/GLMM.R
x /trunk/lme4/R/GLMM1.R
x /trunk/lme4/R/lme.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/R/lmList.R
x /trunk/lme4/R/sscCrosstab.R
x /trunk/lme4/R/ssclme.R
~ /trunk/lme4/ToDo

Rev 1165 – Release 0.9-1

bates — Fri, 25 Feb 2005 13:30:34 +0000

bates – 21 file(s) modified
Release 0.9-1

~ /trunk/lme4/ChangeLog
~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/INDEX
~ /trunk/lme4/inst/doc/Implementation.Rnw
~ /trunk/lme4/inst/doc/MixedEffects.Rnw
~ /trunk/lme4/man/GLMM.Rd
~ /trunk/lme4/man/gsummary.Rd
x /trunk/lme4/man/intervals.Rd
~ /trunk/lme4/man/lme.Rd
~ /trunk/lme4/man/lmer-class.Rd
~ /trunk/lme4/man/lmer.Rd
~ /trunk/lme4/man/lmList.Rd
x /trunk/lme4/man/Names.Rd
~ /trunk/lme4/man/pooledSD.Rd
~ /trunk/lme4/man/random.effects.Rd
~ /trunk/lme4/man/VarCorr.Rd
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/AllGeneric.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/R/lmList.R

Rev 1127 – Release 0.8-3

bates — Fri, 18 Feb 2005 19:25:47 +0000

bates – 5 file(s) modified
Release 0.8-3

~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/man/lmer-class.Rd
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/lme.R
~ /trunk/lme4/R/lmer.R

Rev 1094 – Use coercion to extract L from an lmer object

bates — Tue, 15 Feb 2005 22:15:11 +0000

bates – 3 file(s) modified
Use coercion to extract L from an lmer object

~ /trunk/lme4/man/lmer-class.Rd
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/lmer.R

Rev 936 – Release 0.6-12

bates — Fri, 21 Jan 2005 22:01:21 +0000

bates – 29 file(s) modified
Release 0.6-12

x /trunk/lme4/data/Exam.rda
~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/INDEX
~ /trunk/lme4/inst/doc/Implementation.Rnw
x /trunk/lme4/man/Exam.Rd
x /trunk/lme4/man/groupedData-class.Rd
~ /trunk/lme4/man/groupedData.Rd
~ /trunk/lme4/man/lme-class.Rd
~ /trunk/lme4/man/lme.Rd
+ /trunk/lme4/man/lmer-class.Rd (copied from /trunk/Matrix/man/lmer-class.Rd@896)
~ /trunk/lme4/man/lmer.Rd
~ /trunk/lme4/man/random.effects.Rd
+ /trunk/lme4/man/summary.lmer-class.Rd
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/formulas.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/tests/bdf.R
~ /trunk/lme4/tests/bdf.Rout.save
~ /trunk/lme4/tests/Early.R
~ /trunk/lme4/tests/Early.Rout.save
~ /trunk/lme4/tests/egsingle.R
+ /trunk/lme4/tests/egsingle.Rout.save
~ /trunk/lme4/tests/Hsb82.R
~ /trunk/lme4/tests/Hsb82.Rout.save
~ /trunk/lme4/tests/Pixel.R
~ /trunk/lme4/tests/Pixel.Rout.save
~ /trunk/lme4/tests/ScotsSec.R
~ /trunk/lme4/tests/ScotsSec.Rout.save

Rev 888 – Change to the lmer representation

bates — Mon, 03 Jan 2005 19:26:58 +0000

bates – 2 file(s) modified
Change to the lmer representation

+ /trunk/Matrix/man/lmer-class.Rd (copied from /trunk/Matrix/man/lmeRep-class.Rd@831)
x /trunk/Matrix/man/lmeRep-class.Rd

Rev 473 – extending lmeRep to multiple nested grouping factors

bates — Thu, 26 Aug 2004 16:01:35 +0000

bates – 5 file(s) modified
extending lmeRep to multiple nested grouping factors

~ /trunk/Matrix/man/lmeRep-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/lmeRep.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 466 – Remove taucs, add lmeRep, new release

bates — Tue, 24 Aug 2004 02:08:08 +0000

bates – 16 file(s) modified
Remove taucs, add lmeRep, new release

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
+ /trunk/Matrix/man/lmeRep-class.Rd
~ /trunk/Matrix/man/sscChol-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/cscMatrix.h
~ /trunk/Matrix/src/lmeRep.c
~ /trunk/Matrix/src/lmeRep.h
~ /trunk/Matrix/src/Makefile
~ /trunk/Matrix/src/Makefile.win
~ /trunk/Matrix/src/sscMatrix.c
~ /trunk/Matrix/src/sscMatrix.h
x /trunk/Matrix/src/taucs
x /trunk/Matrix/src/taucs_utils.c
x /trunk/Matrix/src/taucs_utils.h
x /trunk/Matrix/src/utils.c