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3543 7268 d 0 h maechler /branches/Matrix-for-R-2.3.x/ branching an "old-R" compatible version of Matrix  
/branches/Matrix-for-R-2.3.x
3365 7297 d 23 h maechler /trunk/Matrix/man/ add data(sleepstudy), needed because of LazyData: no  
/trunk/Matrix/man/VarCorr.Rd
/trunk/Matrix/man/fixef.Rd
/trunk/Matrix/man/hatTrace.Rd
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/man/mcmcsamp.Rd
/trunk/Matrix/man/ranef.Rd
/trunk/Matrix/man/sleepstudy.Rd
3175 7369 d 2 h maechler /trunk/Matrix/man/ start massive use of \linkS4class{.}  
/trunk/Matrix/man/CAex.Rd
/trunk/Matrix/man/CHMfactor-class.Rd
/trunk/Matrix/man/Cholesky-class.Rd
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Diagonal.Rd
/trunk/Matrix/man/Hilbert.Rd
/trunk/Matrix/man/LU-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Matrix.Rd
/trunk/Matrix/man/RsparseMatrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/VarCorr.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/compMatrix-class.Rd
/trunk/Matrix/man/dCholCMatrix-class.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/ddiMatrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgRMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/dpoMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dsRMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/dsyMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/dtRMatrix-class-def.Rd
/trunk/Matrix/man/dtpMatrix-class.Rd
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/man/expm.Rd
/trunk/Matrix/man/generalMatrix-class.Rd
/trunk/Matrix/man/index-class.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/ldiMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/lsyMatrix-class.Rd
/trunk/Matrix/man/ltrMatrix-class.Rd
/trunk/Matrix/man/lu.Rd
/trunk/Matrix/man/mcmcsamp.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/man/pedigree-class.Rd
/trunk/Matrix/man/pedigree.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/man/symmetricMatrix-class.Rd
/trunk/Matrix/man/tcrossprod.Rd
/trunk/Matrix/man/triangularMatrix-class.Rd
/trunk/Matrix/man/unused-classes.Rd
2341 7450 d 22 h maechler /trunk/Matrix/man/ add more docu on (l)mer - methods  
/trunk/Matrix/man/VarCorr.Rd
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/lmer.Rd
2177 7501 d 13 h bates /trunk/Matrix/man/ Updating documentation for new version of mer objects  
/trunk/Matrix/man/VarCorr.Rd
/trunk/Matrix/man/dpoMatrix-class.Rd
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/ranef.Rd
1699 7658 d 19 h bates /trunk/Matrix/man/ Remove OrchardSprays examples  
/trunk/Matrix/man/VarCorr.Rd
/trunk/Matrix/man/fixef.Rd
/trunk/Matrix/man/ranef.Rd
1583 7718 d 17 h bates /trunk/Matrix/ Moving lmer to the Matrix package  
/trunk/Matrix/R/lmer.R
/trunk/Matrix/man/BIC.Rd
/trunk/Matrix/man/VarCorr-class.Rd
/trunk/Matrix/man/VarCorr.Rd
/trunk/Matrix/man/fixef.Rd
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/man/lmerControl.Rd
/trunk/Matrix/man/ranef.Rd
/trunk/Matrix/tests/lmer.R
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/INDEX
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/AllGeneric.R
1330 7786 d 2 h bates /trunk/lme4/ Release of lme_0.95-1  
/trunk/lme4/man/lmerControl.Rd
/trunk/lme4/R/GLMM.R
/trunk/lme4/R/GLMM1.R
/trunk/lme4/R/lme.R
/trunk/lme4/R/sscCrosstab.R
/trunk/lme4/R/ssclme.R
/trunk/lme4/inst/doc/MixedEffects.Rnw
/trunk/lme4/man/GLMM-class.Rd
/trunk/lme4/man/GLMM.Rd
/trunk/lme4/man/coefGets.Rd
/trunk/lme4/man/lme-class.Rd
/trunk/lme4/man/lme.Rd
/trunk/lme4/man/lmeControl.Rd
/trunk/lme4/man/sscCrosstab-class.Rd
/trunk/lme4/man/sscCrosstab.Rd
/trunk/lme4/man/ssclme-class.Rd
/trunk/lme4/man/summary.GLMM-class.Rd
/trunk/lme4/man/summary.lme-class.Rd
/trunk/lme4/DESCRIPTION
/trunk/lme4/INDEX
/trunk/lme4/NAMESPACE
/trunk/lme4/R/AllClass.R
/trunk/lme4/R/AllGeneric.R
/trunk/lme4/R/ccoef.R
/trunk/lme4/R/lmList.R
/trunk/lme4/R/lmer.R
/trunk/lme4/ToDo
/trunk/lme4/man/BIC.Rd
/trunk/lme4/man/VarCorr.Rd
/trunk/lme4/man/fixef.Rd
/trunk/lme4/man/lmList-class.Rd
/trunk/lme4/man/lmList.Rd
/trunk/lme4/man/lmer-class.Rd
/trunk/lme4/man/lmer.Rd
/trunk/lme4/man/ranef.Rd
/trunk/lme4/man/summary.lmer-class.Rd
1165 7822 d 3 h bates /trunk/lme4/ Release 0.9-1  
/trunk/lme4/man/Names.Rd
/trunk/lme4/man/intervals.Rd
/trunk/lme4/ChangeLog
/trunk/lme4/DESCRIPTION
/trunk/lme4/INDEX
/trunk/lme4/NAMESPACE
/trunk/lme4/R/AllClass.R
/trunk/lme4/R/AllGeneric.R
/trunk/lme4/R/lmList.R
/trunk/lme4/R/lmer.R
/trunk/lme4/inst/doc/Implementation.Rnw
/trunk/lme4/inst/doc/MixedEffects.Rnw
/trunk/lme4/man/GLMM.Rd
/trunk/lme4/man/VarCorr.Rd
/trunk/lme4/man/gsummary.Rd
/trunk/lme4/man/lmList.Rd
/trunk/lme4/man/lme.Rd
/trunk/lme4/man/lmer-class.Rd
/trunk/lme4/man/lmer.Rd
/trunk/lme4/man/pooledSD.Rd
/trunk/lme4/man/random.effects.Rd
1147 7823 d 17 h bates /trunk/lme4/ Move data sets to mlmRev and MEMSS  
/trunk/lme4/data
/trunk/lme4/man/Alfalfa.Rd
/trunk/lme4/man/Assay.Rd
/trunk/lme4/man/BodyWeight.Rd
/trunk/lme4/man/Cefamandole.Rd
/trunk/lme4/man/Contraception.Rd
/trunk/lme4/man/Dialyzer.Rd
/trunk/lme4/man/Early.Rd
/trunk/lme4/man/Earthquake.Rd
/trunk/lme4/man/Fatigue.Rd
/trunk/lme4/man/Gasoline.Rd
/trunk/lme4/man/Gcsemv.Rd
/trunk/lme4/man/Glucose.Rd
/trunk/lme4/man/Glucose2.Rd
/trunk/lme4/man/Gun.Rd
/trunk/lme4/man/Hsb82.Rd
/trunk/lme4/man/IGF.Rd
/trunk/lme4/man/Machines.Rd
/trunk/lme4/man/MathAchSchool.Rd
/trunk/lme4/man/MathAchieve.Rd
/trunk/lme4/man/Meat.Rd
/trunk/lme4/man/Milk.Rd
/trunk/lme4/man/Mmmec.Rd
/trunk/lme4/man/Muscle.Rd
/trunk/lme4/man/Nitrendipene.Rd
/trunk/lme4/man/Oats.Rd
/trunk/lme4/man/Orthodont.Rd
/trunk/lme4/man/Ovary.Rd
/trunk/lme4/man/Oxboys.Rd
/trunk/lme4/man/Oxide.Rd
/trunk/lme4/man/PBG.Rd
/trunk/lme4/man/Phenobarb.Rd
/trunk/lme4/man/Pixel.Rd
/trunk/lme4/man/Quinidine.Rd
/trunk/lme4/man/Rail.Rd
/trunk/lme4/man/RatPupWeight.Rd
/trunk/lme4/man/Relaxin.Rd
/trunk/lme4/man/Remifentanil.Rd
/trunk/lme4/man/Socatt.Rd
/trunk/lme4/man/Soybean.Rd
/trunk/lme4/man/Spruce.Rd
/trunk/lme4/man/Tetracycline1.Rd
/trunk/lme4/man/Tetracycline2.Rd
/trunk/lme4/man/Wafer.Rd
/trunk/lme4/man/Wheat.Rd
/trunk/lme4/man/Wheat2.Rd
/trunk/lme4/man/bdf.Rd
/trunk/lme4/man/egsingle.Rd
/trunk/lme4/man/ergoStool.Rd
/trunk/lme4/man/guImmun.Rd
/trunk/lme4/man/guPrenat.Rd
/trunk/lme4/man/s3bbx.Rd
/trunk/lme4/man/s3bby.Rd
/trunk/lme4/DESCRIPTION
/trunk/lme4/INDEX
/trunk/lme4/man/GLMM.Rd
/trunk/lme4/man/VarCorr.Rd
/trunk/lme4/man/gsummary.Rd
/trunk/lme4/man/lmList.Rd
/trunk/lme4/man/lme.Rd
/trunk/lme4/man/pooledSD.Rd
283 8125 d 20 h bates /trunk/lme4/ Readying rc1  
/trunk/lme4/R/GLMM.R
/trunk/lme4/man/GLMM.Rd
/trunk/lme4/R/sparseGLMM.R
/trunk/lme4/man/sparseGLMM.Rd
/trunk/lme4/INDEX
/trunk/lme4/NAMESPACE
/trunk/lme4/R/AllGeneric.R
/trunk/lme4/R/formulas.R
/trunk/lme4/R/groupedData.R
/trunk/lme4/R/lme.R
/trunk/lme4/man/Pixel.Rd
/trunk/lme4/man/VarCorr.Rd
/trunk/lme4/man/family-class.Rd
/trunk/lme4/man/formulas.Rd
/trunk/lme4/man/lme-class.Rd
/trunk/lme4/man/lme.Rd
275 8127 d 23 h bates /trunk/lme4/ Documentation changes for R CMD check  
/trunk/lme4/tests/ScotsSec.R
/trunk/lme4/R/glmm.R
/trunk/lme4/R/pdMat.R
/trunk/lme4/man/EMstepsGets.Rd
/trunk/lme4/man/EMupdateGets.Rd
/trunk/lme4/man/GLMM.Rd
/trunk/lme4/man/LMEgradient.Rd
/trunk/lme4/man/glmm-class.Rd
/trunk/lme4/man/glmmStruct.Rd
/trunk/lme4/man/lmeLevel-class.Rd
/trunk/lme4/man/lmeLevel.Rd
/trunk/lme4/man/logDet.Rd
/trunk/lme4/man/model.matrixGets.Rd
/trunk/lme4/man/nlme-internal.Rd
/trunk/lme4/man/nlmeInternal-class.Rd
/trunk/lme4/man/pdgradient.Rd
/trunk/lme4/man/reStruct-class.Rd
/trunk/lme4/man/reStruct.Rd
/trunk/lme4/man/responseGets.Rd
/trunk/lme4/man/summary.reStruct-class.Rd
/trunk/lme4/man/weightedGets.Rd
/trunk/lme4/src/Makevars
/trunk/lme4/src/STYLE
/trunk/lme4/tests/pdDiag.R
/trunk/lme4/tests/pdIdent.R
/trunk/lme4/tests/pdLogChol.R
/trunk/lme4/tests/pdNatural.R
/trunk/lme4/tests/ssclme.R
/trunk/lme4/INDEX
/trunk/lme4/NAMESPACE
/trunk/lme4/R/AllClass.R
/trunk/lme4/R/AllGeneric.R
/trunk/lme4/R/VarCorr.R
/trunk/lme4/R/sparseGLMM.R
/trunk/lme4/man/LMEoptimizeGets.Rd
/trunk/lme4/man/VarCorr.Rd
/trunk/lme4/man/family-class.Rd
/trunk/lme4/man/fixed.effects.Rd
/trunk/lme4/man/formulas.Rd
/trunk/lme4/man/lme-class.Rd
/trunk/lme4/man/lme.Rd
/trunk/lme4/man/lmeControl.Rd
/trunk/lme4/man/sparseGLMM.Rd
/trunk/lme4/src/utilities.h
/trunk/lme4/tests/GLMM.R
/trunk/lme4/tests/bdf.R
/trunk/lme4/tests/guImmun.R
/trunk/lme4/tests/guPrenat.R
151 8164 d 20 h bates /trunk/lme4/ Initial import  
/trunk/lme4
/trunk/lme4/ChangeLog
/trunk/lme4/DESCRIPTION
/trunk/lme4/Doxyfile
/trunk/lme4/INDEX
/trunk/lme4/NAMESPACE
/trunk/lme4/R
/trunk/lme4/R/AllClass.R
/trunk/lme4/R/AllGeneric.R
/trunk/lme4/R/VarCorr.R
/trunk/lme4/R/formulas.R
/trunk/lme4/R/glmm.R
/trunk/lme4/R/glmmStruct.R
/trunk/lme4/R/groupedData.R
/trunk/lme4/R/lmList.R
/trunk/lme4/R/lme.R
/trunk/lme4/R/pdMat.R
/trunk/lme4/R/reLevel.R
/trunk/lme4/R/reStruct.R
/trunk/lme4/R/ssclme.R
/trunk/lme4/R/zzz.R
/trunk/lme4/data
/trunk/lme4/data/00Index
/trunk/lme4/data/Alfalfa.rda
/trunk/lme4/data/Assay.rda
/trunk/lme4/data/BodyWeight.rda
/trunk/lme4/data/Cefamandole.rda
/trunk/lme4/data/Dialyzer.rda
/trunk/lme4/data/Earthquake.rda
/trunk/lme4/data/Fatigue.rda
/trunk/lme4/data/Gasoline.rda
/trunk/lme4/data/Glucose.rda
/trunk/lme4/data/Glucose2.rda
/trunk/lme4/data/Gun.rda
/trunk/lme4/data/Hsb82.rda
/trunk/lme4/data/IGF.rda
/trunk/lme4/data/Machines.rda
/trunk/lme4/data/MathAchSchool.rda
/trunk/lme4/data/MathAchieve.rda
/trunk/lme4/data/Meat.rda
/trunk/lme4/data/Milk.rda
/trunk/lme4/data/Muscle.rda
/trunk/lme4/data/Nitrendipene.rda
/trunk/lme4/data/Oats.rda
/trunk/lme4/data/Orthodont.rda
/trunk/lme4/data/Ovary.rda
/trunk/lme4/data/Oxboys.rda
/trunk/lme4/data/Oxide.rda
/trunk/lme4/data/PBG.rda
/trunk/lme4/data/Phenobarb.rda
/trunk/lme4/data/Pixel.rda
/trunk/lme4/data/Quinidine.rda
/trunk/lme4/data/Rail.rda
/trunk/lme4/data/RatPupWeight.rda
/trunk/lme4/data/Relaxin.rda
/trunk/lme4/data/Remifentanil.rda
/trunk/lme4/data/Soybean.rda
/trunk/lme4/data/Spruce.rda
/trunk/lme4/data/Tetracycline1.rda
/trunk/lme4/data/Tetracycline2.rda
/trunk/lme4/data/Wafer.rda
/trunk/lme4/data/Wheat.rda
/trunk/lme4/data/Wheat2.rda
/trunk/lme4/data/bdf.rda
/trunk/lme4/data/ergoStool.rda
/trunk/lme4/data/guImmun.rda
/trunk/lme4/data/guPrenat.rda
/trunk/lme4/data/s3bbx.rda
/trunk/lme4/data/s3bby.rda
/trunk/lme4/install.R
/trunk/lme4/man
/trunk/lme4/man/Alfalfa.Rd
/trunk/lme4/man/Assay.Rd
/trunk/lme4/man/BIC.Rd
/trunk/lme4/man/BodyWeight.Rd
/trunk/lme4/man/Cefamandole.Rd
/trunk/lme4/man/Dialyzer.Rd
/trunk/lme4/man/EMstepsGets.Rd
/trunk/lme4/man/EMupdateGets.Rd
/trunk/lme4/man/Earthquake.Rd
/trunk/lme4/man/Fatigue.Rd
/trunk/lme4/man/GLMM.Rd
/trunk/lme4/man/Gasoline.Rd
/trunk/lme4/man/Glucose.Rd
/trunk/lme4/man/Glucose2.Rd
/trunk/lme4/man/Gun.Rd
/trunk/lme4/man/Hsb82.Rd
/trunk/lme4/man/IGF.Rd
/trunk/lme4/man/LMEgradient.Rd
/trunk/lme4/man/LMEoptimizeGets.Rd
/trunk/lme4/man/Machines.Rd
/trunk/lme4/man/MathAchSchool.Rd
/trunk/lme4/man/MathAchieve.Rd
/trunk/lme4/man/Meat.Rd
/trunk/lme4/man/Milk.Rd
/trunk/lme4/man/Muscle.Rd
/trunk/lme4/man/Names.Rd
/trunk/lme4/man/Nitrendipene.Rd
/trunk/lme4/man/Oats.Rd
/trunk/lme4/man/Orthodont.Rd
/trunk/lme4/man/Ovary.Rd
/trunk/lme4/man/Oxboys.Rd
/trunk/lme4/man/Oxide.Rd
/trunk/lme4/man/PBG.Rd
/trunk/lme4/man/Phenobarb.Rd
/trunk/lme4/man/Pixel.Rd
/trunk/lme4/man/Quinidine.Rd
/trunk/lme4/man/Rail.Rd
/trunk/lme4/man/RatPupWeight.Rd
/trunk/lme4/man/Relaxin.Rd
/trunk/lme4/man/Remifentanil.Rd
/trunk/lme4/man/Soybean.Rd
/trunk/lme4/man/Spruce.Rd
/trunk/lme4/man/Tetracycline1.Rd
/trunk/lme4/man/Tetracycline2.Rd
/trunk/lme4/man/VarCorr-class.Rd
/trunk/lme4/man/VarCorr.Rd
/trunk/lme4/man/Wafer.Rd
/trunk/lme4/man/Wheat.Rd
/trunk/lme4/man/Wheat2.Rd
/trunk/lme4/man/bdf.Rd
/trunk/lme4/man/coerce-methods.Rd
/trunk/lme4/man/ergoStool.Rd
/trunk/lme4/man/family-class.Rd
/trunk/lme4/man/fixed.effects.Rd
/trunk/lme4/man/formulas.Rd
/trunk/lme4/man/glmm-class.Rd
/trunk/lme4/man/glmmStruct.Rd
/trunk/lme4/man/groupedData-class.Rd
/trunk/lme4/man/groupedData.Rd
/trunk/lme4/man/guImmun.Rd
/trunk/lme4/man/guPrenat.Rd
/trunk/lme4/man/intervals.Rd
/trunk/lme4/man/lmList-class.Rd
/trunk/lme4/man/lmList.Rd
/trunk/lme4/man/lme-class.Rd
/trunk/lme4/man/lme.Rd
/trunk/lme4/man/lmeControl.Rd
/trunk/lme4/man/lmeLevel-class.Rd
/trunk/lme4/man/lmeLevel.Rd
/trunk/lme4/man/logDet.Rd
/trunk/lme4/man/model.matrixGets.Rd
/trunk/lme4/man/nfGroupedData-class.Rd
/trunk/lme4/man/nffGroupedData-class.Rd
/trunk/lme4/man/nfnGroupedData-class.Rd
/trunk/lme4/man/nlme-internal.Rd
/trunk/lme4/man/nlmeInternal-class.Rd
/trunk/lme4/man/nmGroupedData-class.Rd
/trunk/lme4/man/pdgradient.Rd
/trunk/lme4/man/pooledSD.Rd
/trunk/lme4/man/random.effects.Rd
/trunk/lme4/man/reStruct-class.Rd
/trunk/lme4/man/reStruct.Rd
/trunk/lme4/man/responseGets.Rd
/trunk/lme4/man/s3bbx.Rd
/trunk/lme4/man/s3bby.Rd
/trunk/lme4/man/solve-methods.Rd
/trunk/lme4/man/summary.reStruct-class.Rd
/trunk/lme4/man/weightedGets.Rd
/trunk/lme4/src
/trunk/lme4/src/Makevars
/trunk/lme4/src/STYLE
/trunk/lme4/src/bitfield.c
/trunk/lme4/src/bitfield.h
/trunk/lme4/src/glmmStruct.c
/trunk/lme4/src/ms.c
/trunk/lme4/src/reStruct.c
/trunk/lme4/src/reStruct.h
/trunk/lme4/src/utilities.c
/trunk/lme4/src/utilities.h
/trunk/lme4/tests
/trunk/lme4/tests/GLMM.R
/trunk/lme4/tests/Hsb82.R
/trunk/lme4/tests/bdf.R
/trunk/lme4/tests/guImmun.R
/trunk/lme4/tests/guPrenat.R
/trunk/lme4/tests/pdDiag.R
/trunk/lme4/tests/pdIdent.R
/trunk/lme4/tests/pdLogChol.R
/trunk/lme4/tests/pdNatural.R
/trunk/lme4/tests/ssclme.R