R-packages – /branches/Matrix-for-R-2.3.x/man/

Rev 3805 – Fix error in example in mcmcsamp.Rd with new version of ...

bates — Tue, 19 Sep 2006 20:00:40 +0000

bates – 3 file(s) modified
Fix error in example in mcmcsamp.Rd with new version of lattice

~ /branches/Matrix-for-R-2.3.x/ChangeLog
~ /branches/Matrix-for-R-2.3.x/DESCRIPTION
~ /branches/Matrix-for-R-2.3.x/man/mcmcsamp.Rd

Rev 3782 – port graph-Fixes from the trunk; update Version number

maechler — Fri, 15 Sep 2006 15:48:45 +0000

maechler – 5 file(s) modified
port graph-Fixes from the trunk; update Version number

~ /branches/Matrix-for-R-2.3.x/ChangeLog
~ /branches/Matrix-for-R-2.3.x/DESCRIPTION
~ /branches/Matrix-for-R-2.3.x/man/sparseMatrix-class.Rd
~ /branches/Matrix-for-R-2.3.x/R/sparseMatrix.R
~ /branches/Matrix-for-R-2.3.x/tests/other-pkgs.R

Rev 3680 – Apparently need aliases for both chol,pedigree-method and chol,pedigree,ANY-method

bates — Mon, 04 Sep 2006 19:39:57 +0000

bates – 1 file(s) modified
Apparently need aliases for both chol,pedigree-method and chol,pedigree,ANY-method

~ /branches/Matrix-for-R-2.3.x/man/pedigree-class.Rd

Rev 3679 – New generic for chol requires change in signature in doc

bates — Mon, 04 Sep 2006 19:08:07 +0000

bates – 1 file(s) modified
New generic for chol requires change in signature in doc

~ /branches/Matrix-for-R-2.3.x/man/pedigree-class.Rd

Rev 3543 – branching an "old-R" compatible version of Matrix

maechler — Sat, 02 Sep 2006 16:36:14 +0000

maechler – 1 file(s) modified
branching an "old-R" compatible version of Matrix

+ /branches/Matrix-for-R-2.3.x (copied from /trunk/Matrix@3542)

Rev 3541 – What was I thinking? I checked in files without ...

bates — Fri, 01 Sep 2006 23:17:59 +0000

bates – 2 file(s) modified
What was I thinking? I checked in files without running R CMD check and adding documentation for methods. Now fixed.

~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/R/sparseMatrix.R

Rev 3534 – miscellaneous tweaks; moved some method definitions higher up

maechler — Fri, 01 Sep 2006 15:31:04 +0000

maechler – 13 file(s) modified
miscellaneous tweaks; moved some method definitions higher up

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R

Rev 3524 – several smallish fixes

maechler — Wed, 30 Aug 2006 21:35:09 +0000

maechler – 19 file(s) modified
several smallish fixes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/LU-class.Rd
~ /trunk/Matrix/man/MatrixFactorization-class.Rd
~ /trunk/Matrix/man/sparseLU-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/tests/factorizing.R
~ /trunk/Matrix/tests/group-methods.R
~ /trunk/Matrix/tests/other-pkgs.R
~ /trunk/Matrix/tests/simple.R

Rev 3520 – Promotion of %*% and solve to RHS of ddenseMatrix

bates — Tue, 29 Aug 2006 22:30:57 +0000

bates – 25 file(s) modified
Promotion of %*% and solve to RHS of ddenseMatrix

~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtpMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dspMatrix.h
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dsyMatrix.h
~ /trunk/Matrix/src/dtpMatrix.c
~ /trunk/Matrix/src/dtpMatrix.h
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/Mutils.h

Rev 3519 – Generalize %*% methods for sparse matrices

bates — Tue, 29 Aug 2006 16:34:49 +0000

bates – 4 file(s) modified
Generalize %*% methods for sparse matrices

~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/matprod.R

Rev 3517 – Promote %*% methods to ddenseMatrix class

bates — Tue, 29 Aug 2006 14:07:52 +0000

bates – 9 file(s) modified
Promote %*% methods to ddenseMatrix class

~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R

Rev 3512 – Arith( dMatrix, dMatrix)

maechler — Mon, 28 Aug 2006 15:36:16 +0000

maechler – 2 file(s) modified
Arith( dMatrix, dMatrix)

~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/R/dMatrix.R

Rev 3511 – Matrix(*, forceCheck)

maechler — Mon, 28 Aug 2006 15:35:44 +0000

maechler – 3 file(s) modified
Matrix(*, forceCheck)

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/R/Matrix.R

Rev 3510 – references

maechler — Mon, 28 Aug 2006 13:00:39 +0000

maechler – 1 file(s) modified
references

~ /trunk/Matrix/man/Cholesky.Rd

Rev 3508 – Added triu, tril and band for ddenseMatrix objects.

bates — Sun, 27 Aug 2006 16:16:35 +0000

bates – 8 file(s) modified
Added triu, tril and band for ddenseMatrix objects.

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dense.h
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3502 – Move methods to the CsparseMatrix class

bates — Sat, 26 Aug 2006 03:29:36 +0000

bates – 21 file(s) modified
Move methods to the CsparseMatrix class

~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lgCMatrix.c
~ /trunk/Matrix/src/lgCMatrix.h
~ /trunk/Matrix/src/lgTMatrix.c
~ /trunk/Matrix/src/lgTMatrix.h
~ /trunk/Matrix/src/lsCMatrix.c
~ /trunk/Matrix/src/lsCMatrix.h
~ /trunk/Matrix/src/ltCMatrix.c

Rev 3501 – use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones

maechler — Fri, 25 Aug 2006 20:38:36 +0000

maechler – 18 file(s) modified
use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/ddiMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtpMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c

Rev 3498 – Change incorrect result class dgCMatrix to dgeMatrix.

bates — Fri, 25 Aug 2006 16:48:32 +0000

bates – 1 file(s) modified
Change incorrect result class dgCMatrix to dgeMatrix.

~ /trunk/Matrix/man/sparseQR-class.Rd

Rev 3496 – a bit more "MatrixFactorization" ..

maechler — Fri, 25 Aug 2006 14:39:45 +0000

maechler – 5 file(s) modified
a bit more "MatrixFactorization" ..

~ /trunk/Matrix/man/CHMfactor-class.Rd
+ /trunk/Matrix/man/MatrixFactorization-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
+ /trunk/Matrix/R/MatrixFactorization.R

Rev 3495 – 1st stab at "MatrixFactorization" class; exporting CHMfactor etc

maechler — Fri, 25 Aug 2006 10:44:48 +0000

maechler – 7 file(s) modified
1st stab at "MatrixFactorization" class; exporting CHMfactor etc

~ /trunk/Matrix/man/CHMfactor-class.Rd
~ /trunk/Matrix/man/Cholesky.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dppMatrix.R

Rev 3486 – Added

bates — Thu, 24 Aug 2006 18:20:02 +0000

bates – 1 file(s) modified
Added

+ /trunk/Matrix/man/Cholesky.Rd

Rev 3451 – rename class "LU" to "denseLU" and make "LU" virtual

maechler — Mon, 21 Aug 2006 15:24:47 +0000

maechler – 12 file(s) modified
rename class "LU" to "denseLU" and make "LU" virtual

~ /trunk/Matrix/man/LU-class.Rd
~ /trunk/Matrix/man/lu.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/LU.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/sparseQR.R
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/tests/other-pkgs.R
x /trunk/Matrix/tests/sparseQR.R

Rev 3443 – Document methods for qr.* generics

bates — Sun, 20 Aug 2006 16:15:07 +0000

bates – 1 file(s) modified
Document methods for qr.* generics

~ /trunk/Matrix/man/sparseQR-class.Rd

Rev 3430 – example++

maechler — Fri, 18 Aug 2006 16:59:15 +0000

maechler – 1 file(s) modified
example++

~ /trunk/Matrix/man/LU-class.Rd

Rev 3429 – small update; extend LU-class example

maechler — Fri, 18 Aug 2006 15:42:24 +0000

maechler – 5 file(s) modified
small update; extend LU-class example

~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/LU-class.Rd
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R

Rev 3427 – export zapsmall(); define as.numeric and as.logical methods (not yet finished); ...

maechler — Fri, 18 Aug 2006 13:53:33 +0000

maechler – 8 file(s) modified
export zapsmall(); define as.numeric and as.logical methods (not yet finished); fix printing "U" diagonal triangular sparse

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R

Rev 3422 – Added solve methods for dgCMatrix and documentation

bates — Thu, 17 Aug 2006 22:30:01 +0000

bates – 6 file(s) modified
Added solve methods for dgCMatrix and documentation

~ /trunk/Matrix/man/dgCMatrix-class.Rd
+ /trunk/Matrix/man/qr-methods.Rd
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3420 – add sparse LU and QR decompositions

bates — Thu, 17 Aug 2006 13:57:53 +0000

bates – 11 file(s) modified
add sparse LU and QR decompositions

~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/lu.Rd
+ /trunk/Matrix/man/sparseLU-class.Rd
+ /trunk/Matrix/man/sparseQR-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3413 – update methods list

maechler — Tue, 15 Aug 2006 18:25:14 +0000

maechler – 1 file(s) modified
update methods list

~ /trunk/Matrix/man/CsparseMatrix-class.Rd

Rev 3405 – Use CHOLMOD code for general methods at CsparseMatrix, TsparseMatrix, denseMatrix ...

bates — Mon, 14 Aug 2006 19:00:02 +0000

bates – 2 file(s) modified
Use CHOLMOD code for general methods at CsparseMatrix, TsparseMatrix, denseMatrix or matrix level when possible

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/CsparseMatrix-class.Rd

Rev 3403 – Generalize conversions

bates — Sat, 12 Aug 2006 17:34:00 +0000

bates – 4 file(s) modified
Generalize conversions

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd

Rev 3386 – fix comment

maechler — Tue, 08 Aug 2006 16:27:28 +0000

maechler – 1 file(s) modified
fix comment

~ /trunk/Matrix/man/tcrossprod.Rd

Rev 3384 – enable more examples

maechler — Tue, 08 Aug 2006 16:24:53 +0000

maechler – 1 file(s) modified
enable more examples

~ /trunk/Matrix/man/dtpMatrix-class.Rd

Rev 3383 – better (comments in) examples

maechler — Tue, 08 Aug 2006 16:24:41 +0000

maechler – 1 file(s) modified
better (comments in) examples

~ /trunk/Matrix/man/dtrMatrix-class.Rd

Rev 3378 – use speedier crossprod() for "dgC" - still slower than t(.) ...

maechler — Mon, 07 Aug 2006 16:51:14 +0000

maechler – 6 file(s) modified
use speedier crossprod() for "dgC" - still slower than t(.) %*% .

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/KNex.Rd
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/tests/lmer.R

Rev 3374 – tril() etc also for T* and Rsparse

maechler — Mon, 07 Aug 2006 09:05:42 +0000

maechler – 7 file(s) modified
tril() etc also for T* and Rsparse

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dgRMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/TODO

Rev 3365 – add data(sleepstudy), needed because of LazyData: no

maechler — Thu, 03 Aug 2006 17:15:31 +0000

maechler – 8 file(s) modified
add data(sleepstudy), needed because of LazyData: no

~ /trunk/Matrix/man/fixef.Rd
~ /trunk/Matrix/man/hatTrace.Rd
~ /trunk/Matrix/man/lmer-class.Rd
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/man/mcmcsamp.Rd
~ /trunk/Matrix/man/ranef.Rd
~ /trunk/Matrix/man/sleepstudy.Rd
~ /trunk/Matrix/man/VarCorr.Rd

Rev 3361 – hatTrace and warnings about boundary convergence

bates — Tue, 01 Aug 2006 20:26:45 +0000

bates – 6 file(s) modified
hatTrace and warnings about boundary convergence

~ /trunk/Matrix/ChangeLog
+ /trunk/Matrix/inst/external/test3comp.rda
+ /trunk/Matrix/man/hatTrace.Rd
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/tests/lmer.R

Rev 3360 – using \dQuote{} and drop nolonger existing 'random.effects'

maechler — Tue, 01 Aug 2006 17:55:57 +0000

maechler – 1 file(s) modified
using \dQuote{} and drop nolonger existing 'random.effects'

~ /trunk/Matrix/man/ranef.Rd

Rev 3359 – Document the caterpillar plot.

bates — Tue, 01 Aug 2006 15:35:23 +0000

bates – 1 file(s) modified
Document the caterpillar plot.

~ /trunk/Matrix/man/ranef.Rd