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3782 7255 d 3 h maechler /branches/Matrix-for-R-2.3.x/ port graph-Fixes from the trunk; update Version number  
/branches/Matrix-for-R-2.3.x/ChangeLog
/branches/Matrix-for-R-2.3.x/DESCRIPTION
/branches/Matrix-for-R-2.3.x/R/sparseMatrix.R
/branches/Matrix-for-R-2.3.x/man/sparseMatrix-class.Rd
/branches/Matrix-for-R-2.3.x/tests/other-pkgs.R
3543 7268 d 2 h maechler /branches/Matrix-for-R-2.3.x/ branching an "old-R" compatible version of Matrix  
/branches/Matrix-for-R-2.3.x
3541 7268 d 20 h bates /trunk/Matrix/ What was I thinking? I checked in files without running R CMD check and adding documentation for methods. Now fixed.  
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/sparseMatrix-class.Rd
3538 7268 d 20 h bates /trunk/Matrix/R/ Remove redundant method.  
/trunk/Matrix/R/sparseMatrix.R
3536 7268 d 20 h bates /trunk/Matrix/R/ Added direct method to CsparseMatrix from graphNEL  
/trunk/Matrix/R/sparseMatrix.R
3534 7269 d 3 h maechler /trunk/Matrix/ miscellaneous tweaks; moved some method definitions higher up  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
3524 7270 d 21 h maechler /trunk/Matrix/ several smallish fixes  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/LU-class.Rd
/trunk/Matrix/man/MatrixFactorization-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/sparseLU-class.Rd
/trunk/Matrix/tests/factorizing.R
/trunk/Matrix/tests/group-methods.R
/trunk/Matrix/tests/other-pkgs.R
/trunk/Matrix/tests/simple.R
3428 7283 d 3 h maechler /trunk/Matrix/R/ fix last fix  
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/sparseMatrix.R
3427 7283 d 5 h maechler /trunk/Matrix/ export zapsmall(); define as.numeric and as.logical methods (not yet finished); fix printing "U" diagonal triangular sparse  
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/dMatrix-class.Rd
3373 7294 d 10 h maechler /trunk/Matrix/R/ sparse -> graph fix  
/trunk/Matrix/R/sparseMatrix.R
3310 7322 d 3 h maechler /trunk/Matrix/ miscellaneous small things, including extended tests; see also ChangeLog  
/trunk/Matrix/tests/bind.Rout.save
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Matrix.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/lu.Rd
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/base-matrix-fun.R
/trunk/Matrix/tests/bind.R
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/simple.R
3226 7352 d 21 h maechler /trunk/Matrix/ coercion to and multiplication of diagonal and sparse matrices  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/ddiMatrix-class.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/ldiMatrix-class.Rd
3218 7354 d 9 h maechler /trunk/Matrix/ implemented all 4 of {rowSums(), ... colMeans()}  
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/tests/base-matrix-fun.R
3149 7375 d 12 h maechler /trunk/Matrix/ some "sparse <-> graph" updates  
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/dgTMatrix.c
/trunk/Matrix/src/dgTMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/tests/graph.R
3034 7423 d 23 h maechler /trunk/Matrix/ coercions from dgC to triangular (dtC) and symmetric (dsC), etc  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/dtTMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/tests/simple.R
2357 7441 d 5 h maechler /trunk/Matrix/ sparse: "[<-" and better arithmetic; other tweaks  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/Done
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Matrix.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lsyMatrix-class.Rd
/trunk/Matrix/man/ltrMatrix-class.Rd
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/group-methods.R
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
2208 7496 d 23 h maechler /trunk/Matrix/ make Matrix() "smart" -- with help of quite a few new setAs(. , .) settings  
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/dtTMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/R/ltCMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/Matrix.Rd
/trunk/Matrix/man/dtRMatrix-class-def.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/tests/base-matrix-fun.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/simple.R
2158 7503 d 1 h maechler /trunk/Matrix/ add ", drop = FALSE" in lmer.coef constructions; plus a few comments  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/tests/lmer.R
2120 7510 d 20 h maechler /trunk/Matrix/R/ isSymmetric() generic must match isSymmetric in R-devel  
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
1998 7562 d 22 h bates /trunk/Matrix/R/ Adding PACKAGE = to .Call  
/trunk/Matrix/R/LU.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dtTMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/R/eigen.R
/trunk/Matrix/R/lCholCMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgCMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/ltCMatrix.R
/trunk/Matrix/R/pdmatrix.R
/trunk/Matrix/R/sparseMatrix.R
1906 7597 d 23 h maechler /trunk/Matrix/R/ isSymmetric() & simulate() updates; sparse subsetting  
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/R/zzz.R
1869 7605 d 1 h maechler /trunk/Matrix/ more coercions; particularly "d" <-> "l"; more tests (and more FIXMEs!); fixing two "index-0 bugs"; ...  
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/dtTMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgeMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/R/zzz.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/dCholCMatrix-class.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/dsyMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/dtpMatrix-class.Rd
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/ltrMatrix-class.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/Makefile
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/tests/base-matrix-fun.R
/trunk/Matrix/tests/dg_Matrix.R
/trunk/Matrix/tests/group-methods.R
/trunk/Matrix/tests/simple.R
1833 7616 d 0 h maechler /trunk/Matrix/ too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for sparse ones; more "s/gTMatrix/TsparseMatrix/" fixes; quite a few more tests, incl some for *all* classes  
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lsparseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/inst/test-tools.R
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/Xtrct-methods.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/dsyMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/bind.R
/trunk/Matrix/tests/dgTMatrix.R
/trunk/Matrix/tests/group-methods.R
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/matprod.R
1804 7627 d 3 h maechler /trunk/Matrix/ cbind() / cbind2() methods for R >= 2.2.0  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/R/zzz.R
/trunk/Matrix/inst/test-tools.R
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
1777 7635 d 1 h maechler /trunk/Matrix/ new classes "index", "symmetricM*" and "triangularM*"; indexing for logical and character indices; new tests; more to do  
/trunk/Matrix/man/index-class.Rd
/trunk/Matrix/tests/dgTMatrix.R
/trunk/Matrix/tests/graph.R
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/gTMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/Xtrct-methods.Rd
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
1765 7638 d 21 h maechler /trunk/Matrix/ prepare graphNEL coercion both for directed and undir.  
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/src/dgTMatrix.c
/trunk/Matrix/src/dgTMatrix.h
/trunk/Matrix/src/init.c
1761 7640 d 1 h maechler /trunk/Matrix/ Version 0.98-6: "[" methods for dense matrices; first "[<-"; examples  
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/Xtrct-methods.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dsRMatrix-class.Rd
/trunk/Matrix/man/gTMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
1746 7647 d 2 h maechler /trunk/Matrix/ printing of sparse logicals; "[" reorganization (part 1)  
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/lgCMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Xtrct-methods.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/tests/Class+Meth.R
1735 7647 d 21 h bates /trunk/Matrix/ Coercion method for graphNEL to sparseMatrix class  
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgTMatrix.c
/trunk/Matrix/src/dgTMatrix.h
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
1325 7787 d 11 h maechler /trunk/Matrix/ "[" and show() methods for sparse matrices => RFC  
/trunk/Matrix/man/Xtrct-methods.Rd
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
1322 7788 d 1 h bates /trunk/Matrix/R/ Multiplication operations for sparseMatrix and ddenseMatrix  
/trunk/Matrix/R/sparseMatrix.R