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3771 7256 d 21 h bates /branches/Matrix-for-R-2.3.x/ Version 0.995-18 fixing problem with lmer(resp ~ 1|grp,  
/branches/Matrix-for-R-2.3.x/DESCRIPTION
/branches/Matrix-for-R-2.3.x/INDEX
/branches/Matrix-for-R-2.3.x/R/lmer.R
3543 7268 d 0 h maechler /branches/Matrix-for-R-2.3.x/ branching an "old-R" compatible version of Matrix  
/branches/Matrix-for-R-2.3.x
3524 7270 d 19 h maechler /trunk/Matrix/ several smallish fixes  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/LU-class.Rd
/trunk/Matrix/man/MatrixFactorization-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/sparseLU-class.Rd
/trunk/Matrix/tests/factorizing.R
/trunk/Matrix/tests/group-methods.R
/trunk/Matrix/tests/other-pkgs.R
/trunk/Matrix/tests/simple.R
3497 7276 d 2 h bates /trunk/Matrix/ Bug fix due to Emmanuel Tillard  
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/lmer.R
3363 7298 d 20 h maechler /trunk/Matrix/R/ + factorNames2char() utility for nicer warnings  
/trunk/Matrix/R/lmer.R
3361 7299 d 21 h bates /trunk/Matrix/ hatTrace and warnings about boundary convergence  
/trunk/Matrix/inst/external/test3comp.rda
/trunk/Matrix/man/hatTrace.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/lmer.R
/trunk/Matrix/src/lmer.c
/trunk/Matrix/tests/lmer.R
3354 7300 d 18 h bates /trunk/Matrix/ Add hatTrace function  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/lmer.R
/trunk/Matrix/src/lmer.c
3350 7301 d 5 h maechler /trunk/Matrix/ change unused class "correlation" to "corMatrix"  
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/man/dpoMatrix-class.Rd
3340 7309 d 23 h maechler /trunk/Matrix/ many method cleanups; notably some "dgC" -> "Csparse" generaliztations  
/trunk/Matrix/man/replValue-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/pedigree.R
/trunk/Matrix/TODO
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/tests/bind.R
/trunk/Matrix/tests/bind.Rout.save
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
3339 7311 d 8 h maechler /trunk/Matrix/ pass verbose argument to (gl)mer_MCMCsamp() and use it in C code  
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/lmer.R
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
/trunk/Matrix/tests/lmer.R
3329 7314 d 22 h bates /trunk/Matrix/R/ Remove leading blanks in a string. They are being tabified and result in incorrect alignment  
/trunk/Matrix/R/lmer.R
3327 7315 d 0 h bates /trunk/Matrix/R/ Added a "To Do" about always printing the log-likelihood and the restricted-log-likelihood for an lmer object.  
/trunk/Matrix/R/lmer.R
3288 7326 d 2 h bates /trunk/Matrix/ Establish new class glmer; modify validity check on pedigree to account for nonparallel patterns of missingness in parents  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/lmer.R
3253 7336 d 2 h bates /trunk/Matrix/R/ Correction in deviance method for mer objects; some cleanup  
/trunk/Matrix/R/lmer.R
3246 7343 d 1 h maechler /trunk/Matrix/ fix segfault from wrong formula  
/trunk/Matrix/R/lmer.R
/trunk/Matrix/tests/lmer.R
3236 7350 d 6 h bates /trunk/Matrix/R/ Corrected naming of columns of an mcmcsamp object  
/trunk/Matrix/R/lmer.R
3231 7350 d 9 h maechler /trunk/Matrix/ mcmcsamp()[,"deviance"] was wrong column  
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/lmer.R
/trunk/Matrix/man/mcmcsamp.Rd
3228 7351 d 21 h bates /trunk/Matrix/R/ added simulestimate for lmer but hidden in NAMESPACE  
/trunk/Matrix/R/lmer.R
3221 7354 d 1 h bates /trunk/Matrix/R/ No longer create a generic for qqmath; add deviance to mcmcsamp  
/trunk/Matrix/R/lmer.R
3189 7360 d 20 h bates /trunk/Matrix/ add reference line and grid to qqmath method for ranef.lmer  
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/lmer.R

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