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3543 7268 d 0 h maechler /branches/Matrix-for-R-2.3.x/ branching an "old-R" compatible version of Matrix  
/branches/Matrix-for-R-2.3.x
3517 7272 d 2 h bates /trunk/Matrix/ Promote %*% methods to ddenseMatrix class  
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
3488 7276 d 22 h bates /trunk/Matrix/ Use dup_mMatrix_as_dgeMatrix  
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/R/sparseQR.R
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/dsTMatrix.h
/trunk/Matrix/src/dtTMatrix.c
/trunk/Matrix/src/dtTMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lsCMatrix.c
/trunk/Matrix/src/lsCMatrix.h
3477 7277 d 19 h bates /trunk/Matrix/ Add Cholesky generic and method for dsCMatrix. Use CHOLMOD for chol().  
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsCMatrix.h
3469 7278 d 17 h bates /trunk/Matrix/R/ Replace ssc_transpose call  
/trunk/Matrix/R/dsCMatrix.R
3410 7285 d 22 h maechler /trunk/Matrix/ eliminate sCMatrix_to_gCMatrix now that we have (almost identical) Csparse_symmetric_to_general  
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsCMatrix.h
/trunk/Matrix/src/init.c
3407 7286 d 19 h bates /trunk/Matrix/R/ Consolidate general coercion methods in Csparse.R  
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dsCMatrix.R
3401 7288 d 23 h bates /trunk/Matrix/ Generalize conversions  
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/Tsparse.c
/trunk/Matrix/src/Tsparse.h
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/chm_common.h
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgTMatrix.c
/trunk/Matrix/src/dgTMatrix.h
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/init.c
3340 7309 d 22 h maechler /trunk/Matrix/ many method cleanups; notably some "dgC" -> "Csparse" generaliztations  
/trunk/Matrix/man/replValue-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/pedigree.R
/trunk/Matrix/TODO
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/tests/bind.R
/trunk/Matrix/tests/bind.Rout.save
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
3172 7370 d 8 h maechler /trunk/Matrix/ useDynlib(*, .registration=TRUE)  
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/LU.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgRMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/dppMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dspMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/dtTMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/R/eigen.R
/trunk/Matrix/R/lCholCMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgCMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/ltCMatrix.R
/trunk/Matrix/R/ltTMatrix.R
/trunk/Matrix/R/pedigree.R
3034 7423 d 20 h maechler /trunk/Matrix/ coercions from dgC to triangular (dtC) and symmetric (dsC), etc  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/dtTMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/tests/simple.R
2255 7490 d 0 h maechler /trunk/Matrix/ Class cleanup; particularly ldense* ones  
/trunk/Matrix/R/lgeMatrix.R
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dppMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dspMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/ltCMatrix.R
/trunk/Matrix/R/ltTMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgRMatrix-class.Rd
/trunk/Matrix/man/dpoMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dsyMatrix-class.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/lsyMatrix-class.Rd
/trunk/Matrix/man/ltrMatrix-class.Rd
2208 7496 d 20 h maechler /trunk/Matrix/ make Matrix() "smart" -- with help of quite a few new setAs(. , .) settings  
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/dtTMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/R/ltCMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/Matrix.Rd
/trunk/Matrix/man/dtRMatrix-class-def.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/tests/base-matrix-fun.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/simple.R
1997 7563 d 1 h bates /trunk/Matrix/R/ Adding PACKAGE = to .Call lines  
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/bCrosstab.R
/trunk/Matrix/R/dgBCMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgRMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/dppMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dspMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/dtCMatrix.R
1857 7607 d 7 h maechler /trunk/Matrix/ some "Summary" methods; some "Compare" group methods; logical dense matrices  
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgeMatrix.R
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lsyMatrix-class.Rd
/trunk/Matrix/man/ltrMatrix-class.Rd
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dppMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dspMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/dtTMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/ltCMatrix.R
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/dpoMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/dsyMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/unused-classes.Rd
1830 7617 d 0 h bates /trunk/Matrix/ Added CHOLMOD-based C functions. Still need methods defined in R and some error checking  
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/Tsparse.c
/trunk/Matrix/src/Tsparse.h
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/src/Pattern.c
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/UMFPACK/Makefile
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/chm_common.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgTMatrix.c
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsCMatrix.h
/trunk/Matrix/src/init.c
1771 7636 d 2 h bates /trunk/Matrix/ More coercion methods  
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/man/dsCMatrix-class.Rd
1706 7658 d 3 h bates /trunk/Matrix/ Add writeHB and writeMM methods and generic  
/trunk/Matrix/man/writeHB.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/man/externalFormats.Rd
/trunk/Matrix/src/HBMM.c
/trunk/Matrix/src/HBMM.h
/trunk/Matrix/src/init.c
1529 7740 d 23 h bates /trunk/Matrix/R/ Cosmetic changes  
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dsCMatrix.R
1321 7787 d 23 h bates /trunk/Matrix/ Moving methods for operations with numeric to the Matrix class and with integer to the dMatrix class  
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/dppMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dspMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsCMatrix.h
/trunk/Matrix/src/init.c

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