R-packages – /branches/Matrix-for-R-2.3.x/R/Csparse.R

Rev 3543 – branching an "old-R" compatible version of Matrix

maechler — Sat, 02 Sep 2006 16:36:14 +0000

maechler – 1 file(s) modified
branching an "old-R" compatible version of Matrix

+ /branches/Matrix-for-R-2.3.x (copied from /trunk/Matrix@3542)

Rev 3534 – miscellaneous tweaks; moved some method definitions higher up

maechler — Fri, 01 Sep 2006 15:31:04 +0000

maechler – 13 file(s) modified
miscellaneous tweaks; moved some method definitions higher up

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R

Rev 3519 – Generalize %*% methods for sparse matrices

bates — Tue, 29 Aug 2006 16:34:49 +0000

bates – 4 file(s) modified
Generalize %*% methods for sparse matrices

~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/matprod.R

Rev 3517 – Promote %*% methods to ddenseMatrix class

bates — Tue, 29 Aug 2006 14:07:52 +0000

bates – 9 file(s) modified
Promote %*% methods to ddenseMatrix class

~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R

Rev 3506 – tril,triu,band: triangular only if "square"

maechler — Sat, 26 Aug 2006 18:24:13 +0000

maechler – 1 file(s) modified
tril,triu,band: triangular only if "square"

~ /trunk/Matrix/R/Csparse.R

Rev 3409 – fix replCmat, using new C Csparse_symmetric_to_general

maechler — Tue, 15 Aug 2006 18:17:44 +0000

maechler – 3 file(s) modified
fix replCmat, using new C Csparse_symmetric_to_general

~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save

Rev 3407 – Consolidate general coercion methods in Csparse.R

bates — Mon, 14 Aug 2006 21:10:16 +0000

bates – 3 file(s) modified
Consolidate general coercion methods in Csparse.R

~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R

Rev 3404 – Use CHOLMOD code for general methods at CsparseMatrix, TsparseMatrix, denseMatrix ...

bates — Mon, 14 Aug 2006 18:54:04 +0000

bates – 10 file(s) modified
Use CHOLMOD code for general methods at CsparseMatrix, TsparseMatrix, denseMatrix or matrix level when possible

~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3402 – Generalize conversions

bates — Sat, 12 Aug 2006 17:33:07 +0000

bates – 5 file(s) modified
Generalize conversions

~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/src/CHMfactor.c
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/lmer.R

Rev 3379 – Set stype in C function Csparse_crossprod and avoid R-level conversions

bates — Mon, 07 Aug 2006 18:31:12 +0000

bates – 4 file(s) modified
Set stype in C function Csparse_crossprod and avoid R-level conversions

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c

Rev 3374 – tril() etc also for T* and Rsparse

maechler — Mon, 07 Aug 2006 09:05:42 +0000

maechler – 7 file(s) modified
tril() etc also for T* and Rsparse

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dgRMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/TODO

Rev 3340 – many method cleanups; notably some "dgC" -> "Csparse" generaliztations

maechler — Sat, 22 Jul 2006 17:59:53 +0000

maechler – 41 file(s) modified
many method cleanups; notably some "dgC" -> "Csparse" generaliztations

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
+ /trunk/Matrix/man/replValue-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/pedigree.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/tests/bind.R
~ /trunk/Matrix/tests/bind.Rout.save
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 3226 – coercion to and multiplication of diagonal and sparse matrices

maechler — Fri, 09 Jun 2006 21:47:22 +0000

maechler – 13 file(s) modified
coercion to and multiplication of diagonal and sparse matrices

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/ddiMatrix-class.Rd
~ /trunk/Matrix/man/diagonalMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/ldiMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R

Rev 3218 – implemented all 4 of {rowSums(), ... colMeans()}

maechler — Thu, 08 Jun 2006 09:30:21 +0000

maechler – 19 file(s) modified
implemented all 4 of {rowSums(), ... colMeans()}

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/base-matrix-fun.R
~ /trunk/Matrix/TODO

Rev 3172 – useDynlib(*, .registration=TRUE)

maechler — Tue, 23 May 2006 08:01:44 +0000

maechler – 33 file(s) modified
useDynlib(*, .registration=TRUE)

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgRMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/eigen.R
~ /trunk/Matrix/R/lCholCMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/ltTMatrix.R
~ /trunk/Matrix/R/LU.R
~ /trunk/Matrix/R/pedigree.R
~ /trunk/Matrix/R/Tsparse.R

Rev 3148 – cosmetic, comments

maechler — Thu, 18 May 2006 06:44:43 +0000

maechler – 4 file(s) modified
cosmetic, comments

~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/lmer.R

Rev 3145 – lowerTriMatrix to tril, upperTriMatrix to triu, added band extractor

bates — Wed, 17 May 2006 17:42:09 +0000

bates – 6 file(s) modified
lowerTriMatrix to tril, upperTriMatrix to triu, added band extractor

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/INDEX
+ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Csparse.R

Rev 3139 – single argument [t]crossprod now returns a symmetric matrix

bates — Tue, 16 May 2006 19:12:13 +0000

bates – 6 file(s) modified
single argument [t]crossprod now returns a symmetric matrix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/tests/matprod.R

Rev 3134 – Generics lowerTriMatrix and upperTriMatrix and C function Csparse_band

bates — Mon, 15 May 2006 22:36:59 +0000

bates – 6 file(s) modified
Generics lowerTriMatrix and upperTriMatrix and C function Csparse_band

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/init.c

Rev 2208 – make Matrix() "smart" -- with help of quite a few ...

maechler — Mon, 16 Jan 2006 20:03:48 +0000

maechler – 24 file(s) modified
make Matrix() "smart" -- with help of quite a few new setAs(. , .) settings

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dtRMatrix-class-def.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/tests/base-matrix-fun.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/simple.R

Rev 2059 – make tcrossprod() use 2 arguments (x, y=NULL)

maechler — Fri, 09 Dec 2005 20:55:39 +0000

maechler – 16 file(s) modified
make tcrossprod() use 2 arguments (x, y=NULL)

~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/tcrossprod.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/dtpMatrix.R
~ /trunk/Matrix/TODO

Rev 2022 – Matrix multiplication and coersion at higher level

bates — Wed, 23 Nov 2005 22:20:13 +0000

bates – 18 file(s) modified
Matrix multiplication and coersion at higher level

~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dense.h
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgTMatrix.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Makefile
~ /trunk/Matrix/src/Makefile.win
~ /trunk/Matrix/src/Tsparse.c

Rev 1871 – add "self-documenting" argument names

maechler — Sat, 01 Oct 2005 20:08:51 +0000

maechler – 2 file(s) modified
add "self-documenting" argument names

~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/Tsparse.R

Rev 1836 – crossprod and tcrossprod for Tsparse

bates — Mon, 19 Sep 2005 21:10:59 +0000

bates – 8 file(s) modified
crossprod and tcrossprod for Tsparse

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/matprod.R

Rev 1831 – More progress on incorporating CHOLMOD - still not passing CMD ...

bates — Sun, 18 Sep 2005 23:41:45 +0000

bates – 10 file(s) modified
More progress on incorporating CHOLMOD - still not passing CMD check

~ /trunk/Matrix/NAMESPACE
+ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dtCMatrix.R
x /trunk/Matrix/R/gTMatrix.R
~ /trunk/Matrix/R/lsparseMatrix.R
+ /trunk/Matrix/R/Tsparse.R (copied from /trunk/Matrix/R/gTMatrix.R@1828)
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/dgTMatrix.R