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3543 7268 d 0 h maechler /branches/Matrix-for-R-2.3.x/ branching an "old-R" compatible version of Matrix  
/branches/Matrix-for-R-2.3.x
3524 7270 d 19 h maechler /trunk/Matrix/ several smallish fixes  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/LU-class.Rd
/trunk/Matrix/man/MatrixFactorization-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/sparseLU-class.Rd
/trunk/Matrix/tests/factorizing.R
/trunk/Matrix/tests/group-methods.R
/trunk/Matrix/tests/other-pkgs.R
/trunk/Matrix/tests/simple.R
3496 7276 d 2 h maechler /trunk/Matrix/ a bit more "MatrixFactorization" ..  
/trunk/Matrix/R/MatrixFactorization.R
/trunk/Matrix/man/MatrixFactorization-class.Rd
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/man/CHMfactor-class.Rd
3495 7276 d 6 h maechler /trunk/Matrix/ 1st stab at "MatrixFactorization" class; exporting CHMfactor etc  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/dppMatrix.R
/trunk/Matrix/man/CHMfactor-class.Rd
/trunk/Matrix/man/Cholesky.Rd
/trunk/Matrix/man/dpoMatrix-class.Rd
3484 7277 d 0 h maechler /trunk/Matrix/ eliminate classed argument from dup_mM*() and dependencies  
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dppMatrix.R
/trunk/Matrix/R/dspMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dgeMatrix.h
/trunk/Matrix/src/dppMatrix.c
/trunk/Matrix/src/dppMatrix.h
/trunk/Matrix/src/dspMatrix.c
/trunk/Matrix/src/dspMatrix.h
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/dtrMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/sparseQR.c
/trunk/Matrix/src/sparseQR.h
3475 7277 d 19 h bates /trunk/Matrix/ Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/init.c
3451 7280 d 1 h maechler /trunk/Matrix/ rename class "LU" to "denseLU" and make "LU" virtual  
/trunk/Matrix/tests/sparseQR.R
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/LU.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/pMatrix.R
/trunk/Matrix/R/sparseQR.R
/trunk/Matrix/man/LU-class.Rd
/trunk/Matrix/man/lu.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/tests/other-pkgs.R
3420 7284 d 2 h bates /trunk/Matrix/ add sparse LU and QR decompositions  
/trunk/Matrix/man/sparseLU-class.Rd
/trunk/Matrix/man/sparseQR-class.Rd
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/lu.Rd
/trunk/Matrix/src/cs_utils.c
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/init.c
3415 7285 d 18 h bates /trunk/Matrix/ Adding dgCMatrix_{lusol,qrsol,QR} but QR still not working  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/src/cs_utils.c
/trunk/Matrix/src/cs_utils.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/init.c
3350 7301 d 4 h maechler /trunk/Matrix/ change unused class "correlation" to "corMatrix"  
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/man/dpoMatrix-class.Rd
3340 7309 d 22 h maechler /trunk/Matrix/ many method cleanups; notably some "dgC" -> "Csparse" generaliztations  
/trunk/Matrix/man/replValue-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/pedigree.R
/trunk/Matrix/TODO
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/tests/bind.R
/trunk/Matrix/tests/bind.Rout.save
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
3310 7322 d 0 h maechler /trunk/Matrix/ miscellaneous small things, including extended tests; see also ChangeLog  
/trunk/Matrix/tests/bind.Rout.save
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Matrix.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/lu.Rd
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/base-matrix-fun.R
/trunk/Matrix/tests/bind.R
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/simple.R
3288 7326 d 1 h bates /trunk/Matrix/ Establish new class glmer; modify validity check on pedigree to account for nonparallel patterns of missingness in parents  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/lmer.R
3172 7370 d 8 h maechler /trunk/Matrix/ useDynlib(*, .registration=TRUE)  
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/LU.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgRMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/dppMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dspMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/dtTMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/R/eigen.R
/trunk/Matrix/R/lCholCMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgCMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/ltCMatrix.R
/trunk/Matrix/R/ltTMatrix.R
/trunk/Matrix/R/pedigree.R
3168 7370 d 21 h bates /trunk/Matrix/R/ Copy colcount in CHOLMOD supernodal factorization  
/trunk/Matrix/R/AllClass.R
3138 7376 d 21 h bates /trunk/Matrix/R/ Added check on sire and dam indices to pedigree function and class validation function  
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/pedigree.R
3085 7402 d 1 h maechler /trunk/Matrix/ make pedigree class more memory-efficient; add pedigree()  
/trunk/Matrix/man/pedigree-class.Rd
/trunk/Matrix/man/pedigree.Rd
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/pedigree.R
3063 7410 d 5 h bates /trunk/Matrix/ pedigree class added  
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
3024 7433 d 4 h bates /trunk/Matrix/ Change name of lmer.ranef class to ranef.lmer, add coef.lmer and update plot methods for these classes  
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/lmer.R
2361 7438 d 23 h maechler /trunk/Matrix/R/ use isPacked() [internal] instead of private class "packedMatrix"  
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/dMatrix.R

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