R-packages – /branches/Matrix-for-R-2.3.x/R/

Rev 3782 – port graph-Fixes from the trunk; update Version number

maechler — Fri, 15 Sep 2006 15:48:45 +0000

maechler – 5 file(s) modified
port graph-Fixes from the trunk; update Version number

~ /branches/Matrix-for-R-2.3.x/ChangeLog
~ /branches/Matrix-for-R-2.3.x/DESCRIPTION
~ /branches/Matrix-for-R-2.3.x/man/sparseMatrix-class.Rd
~ /branches/Matrix-for-R-2.3.x/R/sparseMatrix.R
~ /branches/Matrix-for-R-2.3.x/tests/other-pkgs.R

Rev 3771 – Version 0.995-18 fixing problem with lmer(resp ~ 1|grp,

bates — Wed, 13 Sep 2006 19:50:14 +0000

bates – 3 file(s) modified
Version 0.995-18 fixing problem with lmer(resp ~ 1|grp,

~ /branches/Matrix-for-R-2.3.x/DESCRIPTION
~ /branches/Matrix-for-R-2.3.x/INDEX
~ /branches/Matrix-for-R-2.3.x/R/lmer.R

Rev 3543 – branching an "old-R" compatible version of Matrix

maechler — Sat, 02 Sep 2006 16:36:14 +0000

maechler – 1 file(s) modified
branching an "old-R" compatible version of Matrix

+ /branches/Matrix-for-R-2.3.x (copied from /trunk/Matrix@3542)

Rev 3541 – What was I thinking? I checked in files without ...

bates — Fri, 01 Sep 2006 23:17:59 +0000

bates – 2 file(s) modified
What was I thinking? I checked in files without running R CMD check and adding documentation for methods. Now fixed.

~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/R/sparseMatrix.R

Rev 3538 – Remove redundant method.

bates — Fri, 01 Sep 2006 22:49:10 +0000

bates – 1 file(s) modified
Remove redundant method.

~ /trunk/Matrix/R/sparseMatrix.R

Rev 3536 – Added direct method to CsparseMatrix from graphNEL

bates — Fri, 01 Sep 2006 22:35:29 +0000

bates – 1 file(s) modified
Added direct method to CsparseMatrix from graphNEL

~ /trunk/Matrix/R/sparseMatrix.R

Rev 3534 – miscellaneous tweaks; moved some method definitions higher up

maechler — Fri, 01 Sep 2006 15:31:04 +0000

maechler – 13 file(s) modified
miscellaneous tweaks; moved some method definitions higher up

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R

Rev 3524 – several smallish fixes

maechler — Wed, 30 Aug 2006 21:35:09 +0000

maechler – 19 file(s) modified
several smallish fixes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/LU-class.Rd
~ /trunk/Matrix/man/MatrixFactorization-class.Rd
~ /trunk/Matrix/man/sparseLU-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/tests/factorizing.R
~ /trunk/Matrix/tests/group-methods.R
~ /trunk/Matrix/tests/other-pkgs.R
~ /trunk/Matrix/tests/simple.R

Rev 3520 – Promotion of %*% and solve to RHS of ddenseMatrix

bates — Tue, 29 Aug 2006 22:30:57 +0000

bates – 25 file(s) modified
Promotion of %*% and solve to RHS of ddenseMatrix

~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtpMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dspMatrix.h
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dsyMatrix.h
~ /trunk/Matrix/src/dtpMatrix.c
~ /trunk/Matrix/src/dtpMatrix.h
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/Mutils.h

Rev 3519 – Generalize %*% methods for sparse matrices

bates — Tue, 29 Aug 2006 16:34:49 +0000

bates – 4 file(s) modified
Generalize %*% methods for sparse matrices

~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/matprod.R

Rev 3517 – Promote %*% methods to ddenseMatrix class

bates — Tue, 29 Aug 2006 14:07:52 +0000

bates – 9 file(s) modified
Promote %*% methods to ddenseMatrix class

~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R

Rev 3515 – cosmetic change in show()

maechler — Tue, 29 Aug 2006 07:18:18 +0000

maechler – 1 file(s) modified
cosmetic change in show()

~ /trunk/Matrix/R/MatrixFactorization.R

Rev 3512 – Arith( dMatrix, dMatrix)

maechler — Mon, 28 Aug 2006 15:36:16 +0000

maechler – 2 file(s) modified
Arith( dMatrix, dMatrix)

~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/R/dMatrix.R

Rev 3511 – Matrix(*, forceCheck)

maechler — Mon, 28 Aug 2006 15:35:44 +0000

maechler – 3 file(s) modified
Matrix(*, forceCheck)

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/R/Matrix.R

Rev 3508 – Added triu, tril and band for ddenseMatrix objects.

bates — Sun, 27 Aug 2006 16:16:35 +0000

bates – 8 file(s) modified
Added triu, tril and band for ddenseMatrix objects.

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dense.h
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3506 – tril,triu,band: triangular only if "square"

maechler — Sat, 26 Aug 2006 18:24:13 +0000

maechler – 1 file(s) modified
tril,triu,band: triangular only if "square"

~ /trunk/Matrix/R/Csparse.R

Rev 3504 – Direct call to dup_mMatrix_as_dgeMatrix

bates — Sat, 26 Aug 2006 13:01:22 +0000

bates – 1 file(s) modified
Direct call to dup_mMatrix_as_dgeMatrix

~ /trunk/Matrix/R/dtrMatrix.R

Rev 3502 – Move methods to the CsparseMatrix class

bates — Sat, 26 Aug 2006 03:29:36 +0000

bates – 21 file(s) modified
Move methods to the CsparseMatrix class

~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lgCMatrix.c
~ /trunk/Matrix/src/lgCMatrix.h
~ /trunk/Matrix/src/lgTMatrix.c
~ /trunk/Matrix/src/lgTMatrix.h
~ /trunk/Matrix/src/lsCMatrix.c
~ /trunk/Matrix/src/lsCMatrix.h
~ /trunk/Matrix/src/ltCMatrix.c

Rev 3501 – use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones

maechler — Fri, 25 Aug 2006 20:38:36 +0000

maechler – 18 file(s) modified
use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/ddiMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtpMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c

Rev 3497 – Bug fix due to Emmanuel Tillard

bates — Fri, 25 Aug 2006 14:54:54 +0000

bates – 2 file(s) modified
Bug fix due to Emmanuel Tillard

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/lmer.R

Rev 3496 – a bit more "MatrixFactorization" ..

maechler — Fri, 25 Aug 2006 14:39:45 +0000

maechler – 5 file(s) modified
a bit more "MatrixFactorization" ..

~ /trunk/Matrix/man/CHMfactor-class.Rd
+ /trunk/Matrix/man/MatrixFactorization-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
+ /trunk/Matrix/R/MatrixFactorization.R

Rev 3495 – 1st stab at "MatrixFactorization" class; exporting CHMfactor etc

maechler — Fri, 25 Aug 2006 10:44:48 +0000

maechler – 7 file(s) modified
1st stab at "MatrixFactorization" class; exporting CHMfactor etc

~ /trunk/Matrix/man/CHMfactor-class.Rd
~ /trunk/Matrix/man/Cholesky.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dppMatrix.R

Rev 3488 – Use dup_mMatrix_as_dgeMatrix

bates — Thu, 24 Aug 2006 18:22:39 +0000

bates – 12 file(s) modified
Use dup_mMatrix_as_dgeMatrix

~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/sparseQR.R
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsTMatrix.c
~ /trunk/Matrix/src/dsTMatrix.h
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/src/dtTMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lsCMatrix.c
~ /trunk/Matrix/src/lsCMatrix.h

Rev 3487 – Replaced by CHOLMOD functions

bates — Thu, 24 Aug 2006 18:20:36 +0000

bates – 1 file(s) modified
Replaced by CHOLMOD functions

x /trunk/Matrix/R/lCholCMatrix.R

Rev 3484 – eliminate classed argument from dup_mM*() and dependencies

maechler — Thu, 24 Aug 2006 16:21:18 +0000

maechler – 21 file(s) modified
eliminate classed argument from dup_mM*() and dependencies

~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/dppMatrix.c
~ /trunk/Matrix/src/dppMatrix.h
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dspMatrix.h
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/dtrMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/sparseQR.c
~ /trunk/Matrix/src/sparseQR.h

Rev 3479 – Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead

bates — Wed, 23 Aug 2006 22:12:52 +0000

bates – 1 file(s) modified
Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead

~ /trunk/Matrix/R/lCholCMatrix.R

Rev 3478 – Disable chol methods for lsCMatrix class temporarily; Comment out old ...

bates — Wed, 23 Aug 2006 21:32:30 +0000

bates – 3 file(s) modified
Disable chol methods for lsCMatrix class temporarily; Comment out old code in src/lsCMatrix.[ch]

~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/src/lsCMatrix.c
~ /trunk/Matrix/src/lsCMatrix.h

Rev 3477 – Add Cholesky generic and method for dsCMatrix. Use CHOLMOD ...

bates — Wed, 23 Aug 2006 21:29:22 +0000

bates – 4 file(s) modified
Add Cholesky generic and method for dsCMatrix. Use CHOLMOD for chol().

~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.h

Rev 3475 – Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead

bates — Wed, 23 Aug 2006 21:25:32 +0000

bates – 4 file(s) modified
Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead

~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 3469 – Replace ssc_transpose call

bates — Tue, 22 Aug 2006 22:51:23 +0000

bates – 1 file(s) modified
Replace ssc_transpose call

~ /trunk/Matrix/R/dsCMatrix.R

Rev 3451 – rename class "LU" to "denseLU" and make "LU" virtual

maechler — Mon, 21 Aug 2006 15:24:47 +0000

maechler – 12 file(s) modified
rename class "LU" to "denseLU" and make "LU" virtual

~ /trunk/Matrix/man/LU-class.Rd
~ /trunk/Matrix/man/lu.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/LU.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/sparseQR.R
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/tests/other-pkgs.R
x /trunk/Matrix/tests/sparseQR.R

Rev 3444 – Return correct # of coefs; fix cut-and-paste errors

bates — Sun, 20 Aug 2006 16:15:38 +0000

bates – 1 file(s) modified
Return correct # of coefs; fix cut-and-paste errors

~ /trunk/Matrix/R/sparseQR.R

Rev 3438 – Added methods for sparseQR for qr.qy, qr.qty, qr.coef, qr.resid and ...

bates — Sun, 20 Aug 2006 03:17:19 +0000

bates – 6 file(s) modified
Added methods for sparseQR for qr.qy, qr.qty, qr.coef, qr.resid and qr.fitted

~ /trunk/Matrix/NAMESPACE
+ /trunk/Matrix/R/sparseQR.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/SOURCES_C.mkf
+ /trunk/Matrix/src/sparseQR.c
+ /trunk/Matrix/src/sparseQR.h

Rev 3429 – small update; extend LU-class example

maechler — Fri, 18 Aug 2006 15:42:24 +0000

maechler – 5 file(s) modified
small update; extend LU-class example

~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/LU-class.Rd
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R

Rev 3428 – fix last fix

maechler — Fri, 18 Aug 2006 15:41:36 +0000

maechler – 3 file(s) modified
fix last fix

~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R

Rev 3427 – export zapsmall(); define as.numeric and as.logical methods (not yet finished); ...

maechler — Fri, 18 Aug 2006 13:53:33 +0000

maechler – 8 file(s) modified
export zapsmall(); define as.numeric and as.logical methods (not yet finished); fix printing "U" diagonal triangular sparse

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R

Rev 3424 – Use C code for diagU2N in CsparseMatrix classes

bates — Thu, 17 Aug 2006 22:31:34 +0000

bates – 1 file(s) modified
Use C code for diagU2N in CsparseMatrix classes

~ /trunk/Matrix/R/dtCMatrix.R

Rev 3422 – Added solve methods for dgCMatrix and documentation

bates — Thu, 17 Aug 2006 22:30:01 +0000

bates – 6 file(s) modified
Added solve methods for dgCMatrix and documentation

~ /trunk/Matrix/man/dgCMatrix-class.Rd
+ /trunk/Matrix/man/qr-methods.Rd
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3420 – add sparse LU and QR decompositions

bates — Thu, 17 Aug 2006 13:57:53 +0000

bates – 11 file(s) modified
add sparse LU and QR decompositions

~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/lu.Rd
+ /trunk/Matrix/man/sparseLU-class.Rd
+ /trunk/Matrix/man/sparseQR-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3415 – Adding dgCMatrix_{lusol,qrsol,QR} but QR still not working

bates — Tue, 15 Aug 2006 22:31:30 +0000

bates – 7 file(s) modified
Adding dgCMatrix_{lusol,qrsol,QR} but QR still not working

~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/src/cs_utils.h
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c