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3543 7268 d 3 h maechler /branches/Matrix-for-R-2.3.x/ branching an "old-R" compatible version of Matrix  
/branches/Matrix-for-R-2.3.x
3496 7276 d 5 h maechler /trunk/Matrix/ a bit more "MatrixFactorization" ..  
/trunk/Matrix/R/MatrixFactorization.R
/trunk/Matrix/man/MatrixFactorization-class.Rd
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/man/CHMfactor-class.Rd
3495 7276 d 9 h maechler /trunk/Matrix/ 1st stab at "MatrixFactorization" class; exporting CHMfactor etc  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/dppMatrix.R
/trunk/Matrix/man/CHMfactor-class.Rd
/trunk/Matrix/man/Cholesky.Rd
/trunk/Matrix/man/dpoMatrix-class.Rd
3475 7277 d 22 h bates /trunk/Matrix/ Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/init.c
3451 7280 d 4 h maechler /trunk/Matrix/ rename class "LU" to "denseLU" and make "LU" virtual  
/trunk/Matrix/tests/sparseQR.R
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/LU.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/pMatrix.R
/trunk/Matrix/R/sparseQR.R
/trunk/Matrix/man/LU-class.Rd
/trunk/Matrix/man/lu.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/tests/other-pkgs.R
3438 7281 d 16 h bates /trunk/Matrix/ Added methods for sparseQR for qr.qy, qr.qty, qr.coef, qr.resid and qr.fitted  
/trunk/Matrix/R/sparseQR.R
/trunk/Matrix/src/sparseQR.c
/trunk/Matrix/src/sparseQR.h
/trunk/Matrix/NAMESPACE
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/init.c
3427 7283 d 6 h maechler /trunk/Matrix/ export zapsmall(); define as.numeric and as.logical methods (not yet finished); fix printing "U" diagonal triangular sparse  
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/dMatrix-class.Rd
3420 7284 d 6 h bates /trunk/Matrix/ add sparse LU and QR decompositions  
/trunk/Matrix/man/sparseLU-class.Rd
/trunk/Matrix/man/sparseQR-class.Rd
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/lu.Rd
/trunk/Matrix/src/cs_utils.c
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/init.c
3415 7285 d 21 h bates /trunk/Matrix/ Adding dgCMatrix_{lusol,qrsol,QR} but QR still not working  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/src/cs_utils.c
/trunk/Matrix/src/cs_utils.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/init.c
3354 7300 d 21 h bates /trunk/Matrix/ Add hatTrace function  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/lmer.R
/trunk/Matrix/src/lmer.c
3350 7301 d 7 h maechler /trunk/Matrix/ change unused class "correlation" to "corMatrix"  
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/man/dpoMatrix-class.Rd
3340 7310 d 2 h maechler /trunk/Matrix/ many method cleanups; notably some "dgC" -> "Csparse" generaliztations  
/trunk/Matrix/man/replValue-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/pedigree.R
/trunk/Matrix/TODO
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/tests/bind.R
/trunk/Matrix/tests/bind.Rout.save
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
3337 7311 d 13 h maechler /trunk/Matrix/ export isSymmetric()  
/trunk/Matrix/man/isSymmetric-methods.Rd
/trunk/Matrix/NAMESPACE
3288 7326 d 4 h bates /trunk/Matrix/ Establish new class glmer; modify validity check on pedigree to account for nonparallel patterns of missingness in parents  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/lmer.R
3172 7370 d 12 h maechler /trunk/Matrix/ useDynlib(*, .registration=TRUE)  
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/LU.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgRMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/dppMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dspMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/dtTMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/R/eigen.R
/trunk/Matrix/R/lCholCMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgCMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/ltCMatrix.R
/trunk/Matrix/R/ltTMatrix.R
/trunk/Matrix/R/pedigree.R
3145 7376 d 2 h bates /trunk/Matrix/ lowerTriMatrix to tril, upperTriMatrix to triu, added band extractor  
/trunk/Matrix/man/band.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/INDEX
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Csparse.R
3085 7402 d 4 h maechler /trunk/Matrix/ make pedigree class more memory-efficient; add pedigree()  
/trunk/Matrix/man/pedigree-class.Rd
/trunk/Matrix/man/pedigree.Rd
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/pedigree.R
3080 7404 d 5 h bates /trunk/Matrix/ Remove postVar generic and methods  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/lmer.R
3063 7410 d 8 h bates /trunk/Matrix/ pedigree class added  
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
3054 7414 d 20 h bates /trunk/Matrix/ Added qqmath method for ranef.lmer and postVar for ranef methods  
/trunk/Matrix/ChangeLog
/trunk/Matrix/INDEX
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/TODO
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h

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