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3771 7256 d 18 h bates /branches/Matrix-for-R-2.3.x/ Version 0.995-18 fixing problem with lmer(resp ~ 1|grp,  
/branches/Matrix-for-R-2.3.x/DESCRIPTION
/branches/Matrix-for-R-2.3.x/INDEX
/branches/Matrix-for-R-2.3.x/R/lmer.R
3543 7267 d 21 h maechler /branches/Matrix-for-R-2.3.x/ branching an "old-R" compatible version of Matrix  
/branches/Matrix-for-R-2.3.x
3445 7280 d 22 h bates /trunk/Matrix/  
/trunk/Matrix/ChangeLog
/trunk/Matrix/INDEX
3403 7288 d 21 h bates /trunk/Matrix/ Generalize conversions  
/trunk/Matrix/ChangeLog
/trunk/Matrix/INDEX
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
3356 7300 d 15 h bates /trunk/Matrix/  
/trunk/Matrix/ChangeLog
/trunk/Matrix/INDEX
3180 7365 d 18 h bates /trunk/Matrix/ Add isNested and for an identity permutation for nested grouping factors  
/trunk/Matrix/ChangeLog
/trunk/Matrix/INDEX
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
3153 7373 d 3 h bates /trunk/Matrix/ Initial denom_df attempt  
/trunk/Matrix/INDEX
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
3145 7375 d 20 h bates /trunk/Matrix/ lowerTriMatrix to tril, upperTriMatrix to triu, added band extractor  
/trunk/Matrix/man/band.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/INDEX
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Csparse.R
3093 7397 d 19 h bates /trunk/Matrix/ Extend example and add references for pedigree-class  
/trunk/Matrix/INDEX
/trunk/Matrix/man/pedigree-class.Rd
3082 7404 d 0 h bates /trunk/Matrix/ document qqmath method for ranef.lmer objects  
/trunk/Matrix/ChangeLog
/trunk/Matrix/INDEX
/trunk/Matrix/man/lmer-class.Rd
3054 7414 d 14 h bates /trunk/Matrix/ Added qqmath method for ranef.lmer and postVar for ranef methods  
/trunk/Matrix/ChangeLog
/trunk/Matrix/INDEX
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/TODO
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
3022 7433 d 3 h bates /trunk/Matrix/ modifying return value of ranef method and adding residuals method  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/INDEX
/trunk/Matrix/R/lmer.R
2364 7437 d 18 h bates /trunk/Matrix/ Fix dpotrf call for BLAS under Mac OS X  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/INDEX
/trunk/Matrix/src/dpoMatrix.c
2355 7441 d 1 h bates /trunk/Matrix/ Update documentation to new lmer class structure  
/trunk/Matrix/Done
/trunk/Matrix/INDEX
/trunk/Matrix/TODO
/trunk/Matrix/man/lmer-class.Rd
2304 7461 d 15 h bates /trunk/Matrix/ Used cholmod_vertcat and cholmod_horzcat for cbind2 and rbind2 in the dsparseMatrix virtual class  
/trunk/Matrix/INDEX
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/init.c
2259 7488 d 17 h bates /trunk/Matrix/ Fix trivial memory leaks  
/trunk/Matrix/INDEX
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/src/iohb.c
/trunk/Matrix/src/mmio.c
2199 7497 d 19 h bates /trunk/Matrix/ modifications to lmer and related classes  
/trunk/Matrix/INDEX
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/tests/lmer.R
2194 7499 d 14 h bates /trunk/Matrix/ Move glmer reweighting to internal_update_ZXy; rearrange the deck chairs  
/trunk/Matrix/INDEX
/trunk/Matrix/R/lmer.R
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/chm_common.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
/trunk/Matrix/tests/lmer.R
2146 7505 d 18 h bates /trunk/Matrix/ Fix due to Peter Dalgaard for segfault with multiple non-nested grouping factors; Version 0.99-5  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/INDEX
/trunk/Matrix/TODO
/trunk/Matrix/src/dgBCMatrix.c
1876 7602 d 12 h bates /trunk/Matrix/ Modifications to mer2  
/trunk/Matrix/INDEX
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h

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