R-packages – /branches/Matrix-for-R-2.3.x/ChangeLog

Rev 3805 – Fix error in example in mcmcsamp.Rd with new version of ...

bates — Tue, 19 Sep 2006 20:00:40 +0000

bates – 3 file(s) modified
Fix error in example in mcmcsamp.Rd with new version of lattice

~ /branches/Matrix-for-R-2.3.x/ChangeLog
~ /branches/Matrix-for-R-2.3.x/DESCRIPTION
~ /branches/Matrix-for-R-2.3.x/man/mcmcsamp.Rd

Rev 3782 – port graph-Fixes from the trunk; update Version number

maechler — Fri, 15 Sep 2006 15:48:45 +0000

maechler – 5 file(s) modified
port graph-Fixes from the trunk; update Version number

~ /branches/Matrix-for-R-2.3.x/ChangeLog
~ /branches/Matrix-for-R-2.3.x/DESCRIPTION
~ /branches/Matrix-for-R-2.3.x/man/sparseMatrix-class.Rd
~ /branches/Matrix-for-R-2.3.x/R/sparseMatrix.R
~ /branches/Matrix-for-R-2.3.x/tests/other-pkgs.R

Rev 3543 – branching an "old-R" compatible version of Matrix

maechler — Sat, 02 Sep 2006 16:36:14 +0000

maechler – 1 file(s) modified
branching an "old-R" compatible version of Matrix

+ /branches/Matrix-for-R-2.3.x (copied from /trunk/Matrix@3542)

Rev 3537 – * empty log message *

bates — Fri, 01 Sep 2006 22:35:59 +0000

bates – 1 file(s) modified
*** empty log message ***

~ /trunk/Matrix/ChangeLog

Rev 3534 – miscellaneous tweaks; moved some method definitions higher up

maechler — Fri, 01 Sep 2006 15:31:04 +0000

maechler – 13 file(s) modified
miscellaneous tweaks; moved some method definitions higher up

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R

Rev 3524 – several smallish fixes

maechler — Wed, 30 Aug 2006 21:35:09 +0000

maechler – 19 file(s) modified
several smallish fixes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/LU-class.Rd
~ /trunk/Matrix/man/MatrixFactorization-class.Rd
~ /trunk/Matrix/man/sparseLU-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/tests/factorizing.R
~ /trunk/Matrix/tests/group-methods.R
~ /trunk/Matrix/tests/other-pkgs.R
~ /trunk/Matrix/tests/simple.R

Rev 3511 – Matrix(*, forceCheck)

maechler — Mon, 28 Aug 2006 15:35:44 +0000

maechler – 3 file(s) modified
Matrix(*, forceCheck)

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/R/Matrix.R

Rev 3508 – Added triu, tril and band for ddenseMatrix objects.

bates — Sun, 27 Aug 2006 16:16:35 +0000

bates – 8 file(s) modified
Added triu, tril and band for ddenseMatrix objects.

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dense.h
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3501 – use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones

maechler — Fri, 25 Aug 2006 20:38:36 +0000

maechler – 18 file(s) modified
use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/ddiMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtpMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c

Rev 3497 – Bug fix due to Emmanuel Tillard

bates — Fri, 25 Aug 2006 14:54:54 +0000

bates – 2 file(s) modified
Bug fix due to Emmanuel Tillard

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/lmer.R

Rev 3494 –

bates — Thu, 24 Aug 2006 22:08:11 +0000

bates – 1 file(s) modified

~ /trunk/Matrix/ChangeLog

Rev 3491 –

bates — Thu, 24 Aug 2006 18:24:50 +0000

bates – 1 file(s) modified

~ /trunk/Matrix/ChangeLog

Rev 3481 –

bates — Wed, 23 Aug 2006 22:13:53 +0000

bates – 1 file(s) modified

~ /trunk/Matrix/ChangeLog

Rev 3470 – * empty log message *

bates — Tue, 22 Aug 2006 22:51:56 +0000

bates – 1 file(s) modified
*** empty log message ***

~ /trunk/Matrix/ChangeLog

Rev 3467 –

bates — Tue, 22 Aug 2006 22:49:40 +0000

bates – 1 file(s) modified

~ /trunk/Matrix/ChangeLog

Rev 3461 – * empty log message *

bates — Tue, 22 Aug 2006 17:25:43 +0000

bates – 1 file(s) modified
*** empty log message ***

~ /trunk/Matrix/ChangeLog

Rev 3455 – * empty log message *

bates — Tue, 22 Aug 2006 01:01:23 +0000

bates – 1 file(s) modified
*** empty log message ***

~ /trunk/Matrix/ChangeLog

Rev 3449 – * empty log message *

bates — Mon, 21 Aug 2006 14:43:00 +0000

bates – 1 file(s) modified
*** empty log message ***

~ /trunk/Matrix/ChangeLog

Rev 3445 –

bates — Sun, 20 Aug 2006 16:15:59 +0000

bates – 2 file(s) modified

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/INDEX

Rev 3440 –

bates — Sun, 20 Aug 2006 03:26:06 +0000

bates – 1 file(s) modified

~ /trunk/Matrix/ChangeLog

Rev 3427 – export zapsmall(); define as.numeric and as.logical methods (not yet finished); ...

maechler — Fri, 18 Aug 2006 13:53:33 +0000

maechler – 8 file(s) modified
export zapsmall(); define as.numeric and as.logical methods (not yet finished); fix printing "U" diagonal triangular sparse

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R

Rev 3425 –

bates — Thu, 17 Aug 2006 22:37:19 +0000

bates – 1 file(s) modified

~ /trunk/Matrix/ChangeLog

Rev 3408 –

bates — Mon, 14 Aug 2006 21:15:38 +0000

bates – 1 file(s) modified

~ /trunk/Matrix/ChangeLog

Rev 3405 – Use CHOLMOD code for general methods at CsparseMatrix, TsparseMatrix, denseMatrix ...

bates — Mon, 14 Aug 2006 19:00:02 +0000

bates – 2 file(s) modified
Use CHOLMOD code for general methods at CsparseMatrix, TsparseMatrix, denseMatrix or matrix level when possible

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/CsparseMatrix-class.Rd

Rev 3403 – Generalize conversions

bates — Sat, 12 Aug 2006 17:34:00 +0000

bates – 4 file(s) modified
Generalize conversions

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd

Rev 3396 – * empty log message *

bates — Thu, 10 Aug 2006 18:52:55 +0000

bates – 1 file(s) modified
*** empty log message ***

~ /trunk/Matrix/ChangeLog

Rev 3388 – crossprod and tcrossprod for TsparseMatrix

bates — Tue, 08 Aug 2006 17:29:03 +0000

bates – 3 file(s) modified
crossprod and tcrossprod for TsparseMatrix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/src/Csparse.c

Rev 3381 – * empty log message *

bates — Tue, 08 Aug 2006 14:54:43 +0000

bates – 1 file(s) modified
*** empty log message ***

~ /trunk/Matrix/ChangeLog

Rev 3379 – Set stype in C function Csparse_crossprod and avoid R-level conversions

bates — Mon, 07 Aug 2006 18:31:12 +0000

bates – 4 file(s) modified
Set stype in C function Csparse_crossprod and avoid R-level conversions

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c

Rev 3378 – use speedier crossprod() for "dgC" - still slower than t(.) ...

maechler — Mon, 07 Aug 2006 16:51:14 +0000

maechler – 6 file(s) modified
use speedier crossprod() for "dgC" - still slower than t(.) %*% .

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/KNex.Rd
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/tests/lmer.R

Rev 3374 – tril() etc also for T* and Rsparse

maechler — Mon, 07 Aug 2006 09:05:42 +0000

maechler – 7 file(s) modified
tril() etc also for T* and Rsparse

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dgRMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/TODO

Rev 3367 – recreate the S4 Matrix examples at data load time

maechler — Thu, 03 Aug 2006 17:17:55 +0000

maechler – 9 file(s) modified
recreate the S4 Matrix examples at data load time

~ /trunk/Matrix/ChangeLog
+ /trunk/Matrix/data/CAex.R
x /trunk/Matrix/data/CAex.rda
+ /trunk/Matrix/data/KNex.R
x /trunk/Matrix/data/KNex.rda
~ /trunk/Matrix/DESCRIPTION
+ /trunk/Matrix/inst/external/CAex_slots.rda
+ /trunk/Matrix/inst/external/KNex_slots.rda
~ /trunk/Matrix/tests/mm-redo.R

Rev 3361 – hatTrace and warnings about boundary convergence

bates — Tue, 01 Aug 2006 20:26:45 +0000

bates – 6 file(s) modified
hatTrace and warnings about boundary convergence

~ /trunk/Matrix/ChangeLog
+ /trunk/Matrix/inst/external/test3comp.rda
+ /trunk/Matrix/man/hatTrace.Rd
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/tests/lmer.R

Rev 3356 –

bates — Mon, 31 Jul 2006 23:06:01 +0000

bates – 2 file(s) modified

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/INDEX

Rev 3350 – change unused class "correlation" to "corMatrix"

maechler — Mon, 31 Jul 2006 12:11:35 +0000

maechler – 6 file(s) modified
change unused class "correlation" to "corMatrix"

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/lmer.R

Rev 3340 – many method cleanups; notably some "dgC" -> "Csparse" generaliztations

maechler — Sat, 22 Jul 2006 17:59:53 +0000

maechler – 41 file(s) modified
many method cleanups; notably some "dgC" -> "Csparse" generaliztations

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
+ /trunk/Matrix/man/replValue-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/pedigree.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/tests/bind.R
~ /trunk/Matrix/tests/bind.Rout.save
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 3339 – pass verbose argument to (gl)mer_MCMCsamp() and use it in C ...

maechler — Fri, 21 Jul 2006 08:28:18 +0000

maechler – 6 file(s) modified
pass verbose argument to (gl)mer_MCMCsamp() and use it in C code

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/tests/lmer.R

Rev 3338 – miscellaneous mostly related to sparse indexing

maechler — Fri, 21 Jul 2006 06:47:06 +0000

maechler – 17 file(s) modified
miscellaneous mostly related to sparse indexing

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/dgRMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgRMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/TODO

Rev 3326 – non0ind() extended for symmetric sparse matrices -> correct printing

maechler — Mon, 17 Jul 2006 13:08:04 +0000

maechler – 4 file(s) modified
non0ind() extended for symmetric sparse matrices -> correct printing

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/tests/simple.R

Rev 3311 – * empty log message *

bates — Tue, 11 Jul 2006 22:00:41 +0000

bates – 1 file(s) modified
*** empty log message ***

~ /trunk/Matrix/ChangeLog

R-packages – /branches/Matrix-for-R-2.3.x/ChangeLog

Rev 3805 – Fix error in example in mcmcsamp.Rd with new version of ...

Rev 3782 – port graph-Fixes from the trunk; update Version number

Rev 3543 – branching an "old-R" compatible version of Matrix

Rev 3537 – *** empty log message ***

Rev 3534 – miscellaneous tweaks; moved some method definitions higher up

Rev 3524 – several smallish fixes

Rev 3511 – Matrix(*, forceCheck)

Rev 3508 – Added triu, tril and band for ddenseMatrix objects.

Rev 3501 – use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones

Rev 3497 – Bug fix due to Emmanuel Tillard

Rev 3494 –

Rev 3491 –

Rev 3481 –

Rev 3470 – *** empty log message ***

Rev 3467 –

Rev 3461 – *** empty log message ***

Rev 3455 – *** empty log message ***

Rev 3449 – *** empty log message ***

Rev 3445 –

Rev 3440 –

Rev 3427 – export zapsmall(); define as.numeric and as.logical methods (not yet finished); ...

Rev 3425 –

Rev 3408 –

Rev 3405 – Use CHOLMOD code for general methods at CsparseMatrix, TsparseMatrix, denseMatrix ...

Rev 3403 – Generalize conversions

Rev 3396 – *** empty log message ***

Rev 3388 – crossprod and tcrossprod for TsparseMatrix

Rev 3381 – *** empty log message ***

Rev 3379 – Set stype in C function Csparse_crossprod and avoid R-level conversions

Rev 3378 – use speedier crossprod() for "dgC" - still slower than t(.) ...

Rev 3374 – tril() etc also for T* and Rsparse

Rev 3367 – recreate the S4 Matrix examples at data load time

Rev 3361 – hatTrace and warnings about boundary convergence

Rev 3356 –

Rev 3350 – change unused class "correlation" to "corMatrix"

Rev 3340 – many method cleanups; notably some "dgC" -> "Csparse" generaliztations

Rev 3339 – pass verbose argument to (gl)mer_MCMCsamp() and use it in C ...

Rev 3338 – miscellaneous mostly related to sparse indexing

Rev 3326 – non0ind() extended for symmetric sparse matrices -> correct printing

Rev 3311 – *** empty log message ***

Rev 3537 – * empty log message *

Rev 3470 – * empty log message *

Rev 3461 – * empty log message *

Rev 3455 – * empty log message *

Rev 3449 – * empty log message *

Rev 3396 – * empty log message *

Rev 3381 – * empty log message *

Rev 3311 – * empty log message *