R-packages – /branches/Matrix-APIchange/src/init.c

Rev 4529 – Creating a branch for the API changes from the 0.99875 ...

bates — Sun, 01 Jul 2007 13:27:16 +0000

bates – 1 file(s) modified
Creating a branch for the API changes from the 0.99875 series to the 0.999375 series

+ /branches/Matrix-APIchange (copied from /trunk/Matrix@4528)

Rev 4483 – colSums, ... rowMeans for all Matrices; notably sparse ones via ...

maechler — Tue, 19 Jun 2007 16:16:58 +0000

maechler – 25 file(s) modified
colSums, ... rowMeans for all Matrices; notably sparse ones via [diln]gCMatrix_colSums C code

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/man/colSums.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/RsparseMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
+ /trunk/Matrix/R/colSums.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/Rsparse.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/sparseVector.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 4472 – Added Matrix_lengthSym

bates — Mon, 18 Jun 2007 16:12:45 +0000

bates – 2 file(s) modified
Added Matrix_lengthSym

~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Syms.h

Rev 4466 – added dgCMatrix_colSums for [col,row][Sums,Means]

bates — Sat, 16 Jun 2007 15:52:56 +0000

bates – 4 file(s) modified
added dgCMatrix_colSums for [col,row][Sums,Means]

~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 4460 – added lm.fit.sparse (unexported), coercion of "factor" to dgCMatrix and dgCMatrix_cholsol

bates — Fri, 15 Jun 2007 18:19:23 +0000

bates – 5 file(s) modified
added lm.fit.sparse (unexported), coercion of "factor" to dgCMatrix and dgCMatrix_cholsol

~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 4412 – Yet another cholmod export - cholmod_ssmult

bates — Sun, 03 Jun 2007 14:42:03 +0000

bates – 3 file(s) modified
Yet another cholmod export - cholmod_ssmult

~ /trunk/Matrix/inst/include/cholmod.h
~ /trunk/Matrix/inst/include/Matrix_stubs.c
~ /trunk/Matrix/src/init.c

Rev 4353 – Added solve methods for CHMfactor class

bates — Wed, 16 May 2007 20:40:34 +0000

bates – 8 file(s) modified
Added solve methods for CHMfactor class

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/CHMfactor-class.Rd
~ /trunk/Matrix/man/Cholesky.Rd
~ /trunk/Matrix/R/CHMfactor.R
~ /trunk/Matrix/src/CHMfactor.c
~ /trunk/Matrix/src/CHMfactor.h
~ /trunk/Matrix/src/init.c

Rev 4306 – Export another CHOLMOD function

bates — Wed, 25 Apr 2007 22:23:31 +0000

bates – 3 file(s) modified
Export another CHOLMOD function

~ /trunk/Matrix/inst/include/cholmod.h
~ /trunk/Matrix/inst/include/Matrix_stubs.c
~ /trunk/Matrix/src/init.c

Rev 4126 – Fix a cut-and-paste error

bates — Sun, 04 Feb 2007 19:33:36 +0000

bates – 1 file(s) modified
Fix a cut-and-paste error

~ /trunk/Matrix/src/init.c

Rev 4123 – workaround platform-dependent segfault in R_to_CMatrix

maechler — Sat, 03 Feb 2007 16:34:51 +0000

maechler – 6 file(s) modified
workaround platform-dependent segfault in R_to_CMatrix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/R/Rsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/Class+Meth.R

Rev 4104 – many more coercions for diag(), "!", etc; see ChangeLog

maechler — Mon, 29 Jan 2007 20:17:33 +0000

maechler – 72 file(s) modified
many more coercions for diag(), "!", etc; see ChangeLog

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/man/bdiag.Rd
~ /trunk/Matrix/man/Cholesky-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dgRMatrix-class.Rd
~ /trunk/Matrix/man/Diagonal.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsRMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/ltrMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/ndenseMatrix-class.Rd
~ /trunk/Matrix/man/nsparseMatrix-classes.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/man/RsparseMatrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lMatrix.R
~ /trunk/Matrix/R/lsTMatrix.R
~ /trunk/Matrix/R/ltTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/ndenseMatrix.R
~ /trunk/Matrix/R/ngTMatrix.R
~ /trunk/Matrix/R/nsparseMatrix.R
~ /trunk/Matrix/R/nsTMatrix.R
~ /trunk/Matrix/R/ntTMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/Rsparse.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/dgTMatrix.c
~ /trunk/Matrix/src/dgTMatrix.h
x /trunk/Matrix/src/dsTMatrix.c
x /trunk/Matrix/src/dsTMatrix.h
~ /trunk/Matrix/src/dtpMatrix.c
~ /trunk/Matrix/src/dtpMatrix.h
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/dtrMatrix.h
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/SOURCES_C.mkf
+ /trunk/Matrix/src/TMatrix_as.c (copied from /trunk/Matrix/src/dsTMatrix.c@4101)
+ /trunk/Matrix/src/TMatrix_as.h (copied from /trunk/Matrix/src/dsTMatrix.h@4101)
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/dtpMatrix.R
~ /trunk/Matrix/tests/simple.R

Rev 4082 – accomplished quite a few small FIXMEs; see ChangeLog

maechler — Wed, 17 Jan 2007 08:01:10 +0000

maechler – 22 file(s) modified
accomplished quite a few small FIXMEs; see ChangeLog

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/lsparseMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 4069 – export cholmod_scale

bates — Sat, 06 Jan 2007 02:01:24 +0000

bates – 5 file(s) modified
export cholmod_scale

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/inst/include/cholmod.h
~ /trunk/Matrix/inst/include/Matrix_stubs.c
~ /trunk/Matrix/src/init.c

Rev 4055 – more "[<-" fixes; validity of triangular sparse

maechler — Tue, 26 Dec 2006 15:57:06 +0000

maechler – 18 file(s) modified
more "[<-" fixes; validity of triangular sparse

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dtCMatrix.c
~ /trunk/Matrix/src/dtCMatrix.h
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/src/dtTMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/simple.R

Rev 4026 – Export cholmod_change_factor and cholmod_factor_to_sparse

bates — Fri, 15 Dec 2006 10:16:51 +0000

bates – 3 file(s) modified
Export cholmod_change_factor and cholmod_factor_to_sparse

~ /trunk/Matrix/inst/include/cholmod.h
~ /trunk/Matrix/inst/include/Matrix_stubs.c
~ /trunk/Matrix/src/init.c

Rev 4008 – export cholmod_analyze_p; new version

bates — Sat, 09 Dec 2006 00:29:45 +0000

bates – 6 file(s) modified
export cholmod_analyze_p; new version

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/inst/include/cholmod.h
~ /trunk/Matrix/inst/include/Matrix_stubs.c
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/init.c

Rev 3950 – fully-sparse solve() for dsC; indexing & comparison fixes

maechler — Fri, 03 Nov 2006 23:18:07 +0000

maechler – 24 file(s) modified
fully-sparse solve() for dsC; indexing & comparison fixes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/lsTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/tests/validObj.R

Rev 3944 – 2nd round of cleanup for _validate()

maechler — Thu, 02 Nov 2006 13:10:50 +0000

maechler – 24 file(s) modified
2nd round of cleanup for <sparse>_validate()

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/dgTMatrix.c
~ /trunk/Matrix/src/dgTMatrix.h
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.h
~ /trunk/Matrix/src/dsTMatrix.c
~ /trunk/Matrix/src/dsTMatrix.h
~ /trunk/Matrix/src/dtCMatrix.c
~ /trunk/Matrix/src/dtCMatrix.h
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/src/dtTMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lgCMatrix.c
x /trunk/Matrix/src/lgTMatrix.c
x /trunk/Matrix/src/lgTMatrix.h
x /trunk/Matrix/src/lsCMatrix.c
x /trunk/Matrix/src/lsCMatrix.h
x /trunk/Matrix/src/ltCMatrix.c
x /trunk/Matrix/src/ltCMatrix.h
~ /trunk/Matrix/src/SOURCES_C.mkf
~ /trunk/Matrix/src/Tsparse.c

Rev 3943 – tcrossprod(, ); dimnames for [t]crossprod; validity now ensures correct length(Dimnames[[j]])

maechler — Thu, 02 Nov 2006 11:05:35 +0000

maechler – 16 file(s) modified
tcrossprod(<Csp>, <Csp>); dimnames for [t]crossprod; validity now ensures correct length(Dimnames[[j]])

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/chm_common.h
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lgCMatrix.c
~ /trunk/Matrix/src/lgCMatrix.h
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R

Rev 3942 – extend Csparse_Csparse_crossprod for tcrossprod (need test!); isSymmetric improved; misc.

maechler — Wed, 01 Nov 2006 17:50:15 +0000

maechler – 13 file(s) modified
extend Csparse_Csparse_crossprod for tcrossprod (need test!); isSymmetric improved; misc.

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/TODO

Rev 3940 – crossprod(,) added

bates — Wed, 01 Nov 2006 16:29:53 +0000

bates – 8 file(s) modified
crossprod(<CsparseMatrix>,<CsparseMatrix>) added

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/matprod.R

Rev 3916 – Export yet another cholmod routine

bates — Sun, 22 Oct 2006 22:42:40 +0000

bates – 5 file(s) modified
Export yet another cholmod routine

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/inst/include/cholmod.h
~ /trunk/Matrix/inst/include/Matrix_stubs.c
~ /trunk/Matrix/src/init.c

Rev 3911 – Change cholmod to use Rprintf and R's error handler

bates — Fri, 20 Oct 2006 15:04:40 +0000

bates – 6 file(s) modified
Change cholmod to use Rprintf and R's error handler

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/inst/include/cholmod.h
~ /trunk/Matrix/inst/include/Matrix_stubs.c
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/chm_common.h
~ /trunk/Matrix/src/init.c

Rev 3896 – Export cholmod_sort

bates — Mon, 16 Oct 2006 13:42:29 +0000

bates – 3 file(s) modified
Export cholmod_sort

~ /trunk/Matrix/inst/include/cholmod.h
~ /trunk/Matrix/inst/include/Matrix_stubs.c
~ /trunk/Matrix/src/init.c

Rev 3888 – minor corrections

bates — Fri, 13 Oct 2006 12:51:11 +0000

bates – 2 file(s) modified
minor corrections

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/src/init.c

Rev 3876 – Matrix(0, d,d) should also give sparse (not diagonal); general_to_symmetric; notably ...

maechler — Fri, 06 Oct 2006 15:44:01 +0000

maechler – 16 file(s) modified
Matrix(0, d,d) should also give sparse (not diagonal); general_to_symmetric; notably for lsC*; more coercions; first cut at Csparse_drop()

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/simple.R

Rev 3869 – New release to export more CCallable functions

bates — Wed, 04 Oct 2006 22:41:49 +0000

bates – 5 file(s) modified
New release to export more CCallable functions

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/inst/include/cholmod.h
~ /trunk/Matrix/inst/include/Matrix_stubs.c
~ /trunk/Matrix/src/init.c

Rev 3831 – Export more functions from cholmod for use in Zt_create

bates — Thu, 28 Sep 2006 22:31:21 +0000

bates – 4 file(s) modified
Export more functions from cholmod for use in Zt_create

~ /trunk/Matrix/inst/include/cholmod.h
~ /trunk/Matrix/inst/include/Matrix.h
~ /trunk/Matrix/inst/include/Matrix_stubs.c
~ /trunk/Matrix/src/init.c

Rev 3786 – rename lcsc_to_matrix to ncsc_* and write new lcsc_*()

maechler — Sat, 16 Sep 2006 16:23:49 +0000

maechler – 5 file(s) modified
rename lcsc_to_matrix to ncsc_* and write new lcsc_*()

~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/ngCMatrix.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lgCMatrix.c
~ /trunk/Matrix/src/lgCMatrix.h

Rev 3766 – Move checks on column sorting of CsparseMatrix objects to Csparse_validate

bates — Wed, 13 Sep 2006 14:47:28 +0000

bates – 10 file(s) modified
Move checks on column sorting of CsparseMatrix objects to Csparse_validate

~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lgCMatrix.c
~ /trunk/Matrix/src/lsCMatrix.c
~ /trunk/Matrix/src/ltCMatrix.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 3755 – new nMatrix and subclasses; lsparse change to have x slot; ...

maechler — Mon, 11 Sep 2006 22:13:07 +0000

maechler – 64 file(s) modified
new nMatrix and subclasses; lsparse change to have x slot; many consequences

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/inst/doc/Intro2Matrix.Rnw
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CHMfactor-class.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/lsyMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
+ /trunk/Matrix/man/ndenseMatrix-class.Rd
+ /trunk/Matrix/man/ndiMatrix-class.Rd
+ /trunk/Matrix/man/ngeMatrix-class.Rd
+ /trunk/Matrix/man/nMatrix-class.Rd
+ /trunk/Matrix/man/nsparseMatrix-classes.Rd
+ /trunk/Matrix/man/nsyMatrix-class.Rd
+ /trunk/Matrix/man/ntrMatrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
+ /trunk/Matrix/R/lMatrix.R
~ /trunk/Matrix/R/lsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
+ /trunk/Matrix/R/ndenseMatrix.R
+ /trunk/Matrix/R/ngCMatrix.R
+ /trunk/Matrix/R/ngTMatrix.R
+ /trunk/Matrix/R/nsCMatrix.R
+ /trunk/Matrix/R/nsparseMatrix.R
+ /trunk/Matrix/R/ntCMatrix.R
+ /trunk/Matrix/R/ntTMatrix.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/chm_common.h
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsTMatrix.c
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/ldense.c
~ /trunk/Matrix/src/ldense.h
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/Tsparse.c
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R

Rev 3750 – Move the alloc_d**Matrix utility functions from the Matrix package to ...

bates — Mon, 11 Sep 2006 14:49:05 +0000

bates – 6 file(s) modified
Move the alloc_d**Matrix utility functions from the Matrix package to the lme4 package

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/inst/include/Matrix.h
~ /trunk/Matrix/inst/include/Matrix_stubs.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 3678 – Merging changes from Matrix-nolmer branch

bates — Mon, 04 Sep 2006 18:41:34 +0000

bates – 37 file(s) modified
Merging changes from Matrix-nolmer branch

~ /trunk/Matrix/ChangeLog
x /trunk/Matrix/data/sleepstudy.rda
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
x /trunk/Matrix/man/BIC.Rd
x /trunk/Matrix/man/fixef.Rd
x /trunk/Matrix/man/hatTrace.Rd
x /trunk/Matrix/man/lmer-class.Rd
x /trunk/Matrix/man/lmer.Rd
x /trunk/Matrix/man/mcmcsamp.Rd
x /trunk/Matrix/man/pedigree-class.Rd
x /trunk/Matrix/man/pedigree.Rd
x /trunk/Matrix/man/ranef.Rd
x /trunk/Matrix/man/sleepstudy.Rd
x /trunk/Matrix/man/VarCorr-class.Rd
x /trunk/Matrix/man/VarCorr.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/dtCMatrix.R
x /trunk/Matrix/R/lmer.R
x /trunk/Matrix/R/pedigree.R
~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/dtCMatrix.c
~ /trunk/Matrix/src/dtCMatrix.h
~ /trunk/Matrix/src/init.c
x /trunk/Matrix/src/lmer.c
x /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/src/ltCMatrix.c
~ /trunk/Matrix/src/ltCMatrix.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
x /trunk/Matrix/src/pedigree.c
x /trunk/Matrix/src/pedigree.h
~ /trunk/Matrix/src/SOURCES_C.mkf
~ /trunk/Matrix/src/Syms.h
x /trunk/Matrix/tests/lmer.R

Rev 3522 – housekeeping

bates — Wed, 30 Aug 2006 03:05:59 +0000

bates – 1 file(s) modified
housekeeping

~ /trunk/Matrix/src/init.c

Rev 3514 – Remove vestigial classed argument for dsCMatrix_matrix_solve

bates — Tue, 29 Aug 2006 00:04:48 +0000

bates – 3 file(s) modified
Remove vestigial classed argument for dsCMatrix_matrix_solve

~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3508 – Added triu, tril and band for ddenseMatrix objects.

bates — Sun, 27 Aug 2006 16:16:35 +0000

bates – 8 file(s) modified
Added triu, tril and band for ddenseMatrix objects.

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dense.h
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3505 – Added initial version of dgeMatrix_band but may change design

bates — Sat, 26 Aug 2006 17:25:57 +0000

bates – 3 file(s) modified
Added initial version of dgeMatrix_band but may change design

~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3502 – Move methods to the CsparseMatrix class

bates — Sat, 26 Aug 2006 03:29:36 +0000

bates – 21 file(s) modified
Move methods to the CsparseMatrix class

~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lgCMatrix.c
~ /trunk/Matrix/src/lgCMatrix.h
~ /trunk/Matrix/src/lgTMatrix.c
~ /trunk/Matrix/src/lgTMatrix.h
~ /trunk/Matrix/src/lsCMatrix.c
~ /trunk/Matrix/src/lsCMatrix.h
~ /trunk/Matrix/src/ltCMatrix.c

Rev 3501 – use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones

maechler — Fri, 25 Aug 2006 20:38:36 +0000

maechler – 18 file(s) modified
use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/ddiMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtpMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c

Rev 3488 – Use dup_mMatrix_as_dgeMatrix

bates — Thu, 24 Aug 2006 18:22:39 +0000

bates – 12 file(s) modified
Use dup_mMatrix_as_dgeMatrix

~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/sparseQR.R
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsTMatrix.c
~ /trunk/Matrix/src/dsTMatrix.h
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/src/dtTMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lsCMatrix.c
~ /trunk/Matrix/src/lsCMatrix.h