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4529 6966 d 4 h bates /branches/Matrix-APIchange/ Creating a branch for the API changes from the 0.99875 series to the 0.999375 series  
/branches/Matrix-APIchange
4472 6979 d 1 h bates /trunk/Matrix/src/ Added Matrix_lengthSym  
/trunk/Matrix/src/Syms.h
/trunk/Matrix/src/init.c
3678 7265 d 22 h bates /trunk/Matrix/ Merging changes from Matrix-nolmer branch  
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/pedigree.R
/trunk/Matrix/data/sleepstudy.rda
/trunk/Matrix/man/BIC.Rd
/trunk/Matrix/man/VarCorr-class.Rd
/trunk/Matrix/man/VarCorr.Rd
/trunk/Matrix/man/fixef.Rd
/trunk/Matrix/man/hatTrace.Rd
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/man/mcmcsamp.Rd
/trunk/Matrix/man/pedigree-class.Rd
/trunk/Matrix/man/pedigree.Rd
/trunk/Matrix/man/ranef.Rd
/trunk/Matrix/man/sleepstudy.Rd
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
/trunk/Matrix/src/pedigree.c
/trunk/Matrix/src/pedigree.h
/trunk/Matrix/tests/lmer.R
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/INDEX
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/Syms.h
/trunk/Matrix/src/dtCMatrix.c
/trunk/Matrix/src/dtCMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/ltCMatrix.c
/trunk/Matrix/src/ltCMatrix.h
2200 7497 d 20 h bates /trunk/Matrix/ Removing rcond slot from Matrix objects  
/trunk/Matrix/tests/dpoMatrix.Rout.save
/trunk/Matrix/src/Syms.h
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgTMatrix.c
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dpoMatrix.c
/trunk/Matrix/src/dppMatrix.c
/trunk/Matrix/src/dspMatrix.c
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dtpMatrix.c
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/init.c
/trunk/Matrix/tests/dpoMatrix.R
/trunk/Matrix/tests/dtpMatrix.R
2187 7500 d 17 h bates /trunk/Matrix/ Remove redundant registration of dspMatrix_trf; incorporate wts and wrkres slots in mer class  
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/src/Syms.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
2174 7501 d 14 h bates /trunk/Matrix/src/ Switch to supernodal Cholesky representation of mer objects  
/trunk/Matrix/src/Syms.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
1894 7599 d 14 h bates /trunk/Matrix/ More updates on lmer - still not quite correct  
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/src/Makefile
/trunk/Matrix/src/Syms.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
1592 7714 d 16 h bates /trunk/Matrix/ Factoring C code in preparation for AGQ  
/trunk/Matrix/R/lmer.R
/trunk/Matrix/src/Syms.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
1571 7721 d 1 h bates /trunk/Matrix/src/ Use mer objects; Replace REML slot by method slot  
/trunk/Matrix/src/Syms.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
1454 7755 d 1 h deepayan /trunk/Matrix/src/ changes related to Laplace approximation, including new function to compute parts of the deviance in C code, which doesn't currently work  
/trunk/Matrix/src/Syms.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
1448 7759 d 2 h deepayan /trunk/Matrix/src/ additions related to the Laplace approximation in glmm lmer models  
/trunk/Matrix/src/Syms.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
1235 7813 d 20 h maechler /trunk/Matrix/src/ + Matrix_DimnamesSym  
/trunk/Matrix/src/Syms.h
/trunk/Matrix/src/init.c
975 7845 d 5 h bates /trunk/Matrix/ Change name of slot from factorization to factors  
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/data/mm.rda
/trunk/Matrix/inst/doc/Introduction.Rnw
/trunk/Matrix/man/Cholesky-class.Rd
/trunk/Matrix/man/geMatrix-class.Rd
/trunk/Matrix/man/poMatrix-class.Rd
/trunk/Matrix/man/sscChol-class.Rd
/trunk/Matrix/man/sscCrosstab-class.Rd
/trunk/Matrix/man/sscMatrix-class.Rd
/trunk/Matrix/man/syMatrix-class.Rd
/trunk/Matrix/man/trMatrix-class.Rd
/trunk/Matrix/man/tscMatrix-class.Rd
/trunk/Matrix/src/LU.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/Syms.h
/trunk/Matrix/src/cscBlocked.c
/trunk/Matrix/src/cscMatrix.c
/trunk/Matrix/src/geMatrix.c
/trunk/Matrix/src/init.c
/trunk/Matrix/src/poMatrix.c
/trunk/Matrix/src/sscMatrix.c
/trunk/Matrix/src/syMatrix.c
/trunk/Matrix/src/trMatrix.c
/trunk/Matrix/src/triplet.c
/trunk/Matrix/tests/poMatrix.R
873 7881 d 2 h bates /trunk/Matrix/ Working on the lmer classes  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/src/Syms.h
/trunk/Matrix/src/bCrosstab.c
/trunk/Matrix/src/bCrosstab.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmeRep.c
/trunk/Matrix/src/lmeRep.h
/trunk/Matrix/src/ssclme.c
/trunk/Matrix/src/ssclme.h
732 7926 d 20 h bates /trunk/Matrix/src/ Keep symbols and filenames consistent  
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/Syms.h
/trunk/Matrix/src/Makefile
/trunk/Matrix/src/Makefile.win
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/init.c