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4556 6961 d 21 h bates /branches/Matrix-APIchange/src/ Define and use the Alloca macro (like Calloc but calling alloca)  
/branches/Matrix-APIchange/src/Mutils.h
/branches/Matrix-APIchange/src/dgCMatrix.c
4530 6966 d 6 h bates /branches/Matrix-APIchange/ API change - pass the empty structure to the as_cholmod_x functions  
/branches/Matrix-APIchange/DESCRIPTION
/branches/Matrix-APIchange/inst/include/Matrix.h
/branches/Matrix-APIchange/inst/include/Matrix_stubs.c
/branches/Matrix-APIchange/src/CHMfactor.c
/branches/Matrix-APIchange/src/Csparse.c
/branches/Matrix-APIchange/src/Mutils.h
/branches/Matrix-APIchange/src/Tsparse.c
/branches/Matrix-APIchange/src/chm_common.c
/branches/Matrix-APIchange/src/chm_common.h
/branches/Matrix-APIchange/src/dense.c
/branches/Matrix-APIchange/src/dgCMatrix.c
/branches/Matrix-APIchange/src/dsCMatrix.c
/branches/Matrix-APIchange/src/dtTMatrix.c
/branches/Matrix-APIchange/src/t_gCMatrix_colSums.c
4529 6966 d 6 h bates /branches/Matrix-APIchange/ Creating a branch for the API changes from the 0.99875 series to the 0.999375 series  
/branches/Matrix-APIchange
4418 6993 d 2 h bates /trunk/Matrix/src/ Remove warnings after change to const char* CHAR  
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/HBMM.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/Tsparse.c
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/chm_common.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dpoMatrix.c
/trunk/Matrix/src/dpoMatrix.h
/trunk/Matrix/src/dppMatrix.c
/trunk/Matrix/src/dppMatrix.h
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dspMatrix.c
/trunk/Matrix/src/dspMatrix.h
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dsyMatrix.h
/trunk/Matrix/src/dtpMatrix.c
/trunk/Matrix/src/dtrMatrix.c
4104 7118 d 23 h maechler /trunk/Matrix/ many more coercions for diag(), "!", etc; see ChangeLog  
/trunk/Matrix/src/TMatrix_as.c
/trunk/Matrix/src/TMatrix_as.h
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/dsTMatrix.h
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/Rsparse.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/R/lMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lsTMatrix.R
/trunk/Matrix/R/ltTMatrix.R
/trunk/Matrix/R/ndenseMatrix.R
/trunk/Matrix/R/ngTMatrix.R
/trunk/Matrix/R/nsTMatrix.R
/trunk/Matrix/R/nsparseMatrix.R
/trunk/Matrix/R/ntTMatrix.R
/trunk/Matrix/R/pMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/inst/test-tools.R
/trunk/Matrix/man/Cholesky-class.Rd
/trunk/Matrix/man/Diagonal.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/RsparseMatrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/Xtrct-methods.Rd
/trunk/Matrix/man/bdiag.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dgRMatrix-class.Rd
/trunk/Matrix/man/dpoMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dsRMatrix-class.Rd
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/ltrMatrix-class.Rd
/trunk/Matrix/man/ndenseMatrix-class.Rd
/trunk/Matrix/man/nsparseMatrix-classes.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/dgTMatrix.c
/trunk/Matrix/src/dgTMatrix.h
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dgeMatrix.h
/trunk/Matrix/src/dtTMatrix.c
/trunk/Matrix/src/dtpMatrix.c
/trunk/Matrix/src/dtpMatrix.h
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/dtrMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/dtpMatrix.R
/trunk/Matrix/tests/simple.R
4093 7125 d 2 h maechler /trunk/Matrix/src/ + SET_Dimnames; more dimnames setting and other cosmetic  
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/Tsparse.c
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/chm_common.h
/trunk/Matrix/src/cs_utils.c
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dgTMatrix.c
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/dtCMatrix.c
/trunk/Matrix/src/dtTMatrix.c
4082 7131 d 11 h maechler /trunk/Matrix/ accomplished quite a few small FIXMEs; see ChangeLog  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/lsparseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/init.c
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/simple.R
3931 7213 d 3 h maechler /trunk/Matrix/ miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/HBMM.R
/trunk/Matrix/R/Hilbert.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/lMatrix.R
/trunk/Matrix/R/pMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/ddiMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/ldiMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
/trunk/Matrix/tests/validObj.R
3766 7257 d 5 h bates /trunk/Matrix/src/ Move checks on column sorting of CsparseMatrix objects to Csparse_validate  
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lgCMatrix.c
/trunk/Matrix/src/lsCMatrix.c
/trunk/Matrix/src/ltCMatrix.c
3755 7258 d 21 h maechler /trunk/Matrix/ new nMatrix and subclasses; lsparse change to have x slot; many consequences  
/trunk/Matrix/R/lMatrix.R
/trunk/Matrix/R/ndenseMatrix.R
/trunk/Matrix/R/ngCMatrix.R
/trunk/Matrix/R/ngTMatrix.R
/trunk/Matrix/R/nsCMatrix.R
/trunk/Matrix/R/nsparseMatrix.R
/trunk/Matrix/R/ntCMatrix.R
/trunk/Matrix/R/ntTMatrix.R
/trunk/Matrix/man/nMatrix-class.Rd
/trunk/Matrix/man/ndenseMatrix-class.Rd
/trunk/Matrix/man/ndiMatrix-class.Rd
/trunk/Matrix/man/ngeMatrix-class.Rd
/trunk/Matrix/man/nsparseMatrix-classes.Rd
/trunk/Matrix/man/nsyMatrix-class.Rd
/trunk/Matrix/man/ntrMatrix-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgCMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lsparseMatrix.R
/trunk/Matrix/R/pMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/inst/doc/Intro2Matrix.Rnw
/trunk/Matrix/inst/test-tools.R
/trunk/Matrix/man/CHMfactor-class.Rd
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/lsyMatrix-class.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/Tsparse.c
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/chm_common.h
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/dtTMatrix.c
/trunk/Matrix/src/init.c
/trunk/Matrix/src/ldense.c
/trunk/Matrix/src/ldense.h
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
3750 7259 d 5 h bates /trunk/Matrix/ Move the alloc_d**Matrix utility functions from the Matrix package to the lme4 package  
/trunk/Matrix/ChangeLog
/trunk/Matrix/inst/include/Matrix.h
/trunk/Matrix/inst/include/Matrix_stubs.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/init.c
3702 7264 d 6 h bates /trunk/Matrix/ Cleanup  
/trunk/Matrix/ChangeLog
/trunk/Matrix/INDEX
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/lsCMatrix.c
/trunk/Matrix/src/lsCMatrix.h
3678 7266 d 1 h bates /trunk/Matrix/ Merging changes from Matrix-nolmer branch  
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/pedigree.R
/trunk/Matrix/data/sleepstudy.rda
/trunk/Matrix/man/BIC.Rd
/trunk/Matrix/man/VarCorr-class.Rd
/trunk/Matrix/man/VarCorr.Rd
/trunk/Matrix/man/fixef.Rd
/trunk/Matrix/man/hatTrace.Rd
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/man/mcmcsamp.Rd
/trunk/Matrix/man/pedigree-class.Rd
/trunk/Matrix/man/pedigree.Rd
/trunk/Matrix/man/ranef.Rd
/trunk/Matrix/man/sleepstudy.Rd
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
/trunk/Matrix/src/pedigree.c
/trunk/Matrix/src/pedigree.h
/trunk/Matrix/tests/lmer.R
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/INDEX
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/Syms.h
/trunk/Matrix/src/dtCMatrix.c
/trunk/Matrix/src/dtCMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/ltCMatrix.c
/trunk/Matrix/src/ltCMatrix.h
3520 7271 d 21 h bates /trunk/Matrix/ Promotion of %*% and solve to RHS of ddenseMatrix  
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dspMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/dsyMatrix-class.Rd
/trunk/Matrix/man/dtpMatrix-class.Rd
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dgeMatrix.h
/trunk/Matrix/src/dspMatrix.c
/trunk/Matrix/src/dspMatrix.h
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dsyMatrix.h
/trunk/Matrix/src/dtpMatrix.c
/trunk/Matrix/src/dtpMatrix.h
/trunk/Matrix/src/dtrMatrix.c
3518 7272 d 3 h bates /trunk/Matrix/src/ Define and use class_P and mMatrix_as_dgeMatrix  
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/cs_utils.c
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dsCMatrix.c
3503 7275 d 7 h bates /trunk/Matrix/src/ Remove sections of code that are no longer used  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgTMatrix.h
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/dsTMatrix.h
/trunk/Matrix/src/dtTMatrix.h
/trunk/Matrix/src/lgCMatrix.c
/trunk/Matrix/src/lgCMatrix.h
3493 7276 d 22 h bates /trunk/Matrix/src/ Add ddiMatrix,dtpMatrix, dspMatrix and dppMatrix conversions. Remove no-longer-used functions.  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
3484 7277 d 3 h maechler /trunk/Matrix/ eliminate classed argument from dup_mM*() and dependencies  
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dppMatrix.R
/trunk/Matrix/R/dspMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dgeMatrix.h
/trunk/Matrix/src/dppMatrix.c
/trunk/Matrix/src/dppMatrix.h
/trunk/Matrix/src/dspMatrix.c
/trunk/Matrix/src/dspMatrix.h
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/dtrMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/sparseQR.c
/trunk/Matrix/src/sparseQR.h
3463 7278 d 21 h bates /trunk/Matrix/src/ Move check_class to Mutils.h and some bug fixes  
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/chm_common.c
3437 7281 d 16 h bates /trunk/Matrix/src/ Added dup_mMatrix_as_dgeMatrix utility  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h

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