R-packages – /branches/Matrix-APIchange/src/DEPS.mkf

Rev 4529 – Creating a branch for the API changes from the 0.99875 ...

bates — Sun, 01 Jul 2007 13:27:16 +0000

bates – 1 file(s) modified
Creating a branch for the API changes from the 0.99875 series to the 0.999375 series

+ /branches/Matrix-APIchange (copied from /trunk/Matrix@4528)

Rev 4500 – colSums() etc update (fix for lgC*)

maechler — Sat, 23 Jun 2007 18:08:17 +0000

maechler – 4 file(s) modified
colSums() etc update (fix for lgC*)

~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/t_gCMatrix_colSums.c
~ /trunk/Matrix/tests/simple.R

Rev 4496 – update + comment

maechler — Thu, 21 Jun 2007 21:32:39 +0000

maechler – 3 file(s) modified
update + comment

~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/DEPS.mkf_make.sh
~ /trunk/Matrix/src/dtTMatrix.c

Rev 4104 – many more coercions for diag(), "!", etc; see ChangeLog

maechler — Mon, 29 Jan 2007 20:17:33 +0000

maechler – 72 file(s) modified
many more coercions for diag(), "!", etc; see ChangeLog

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/man/bdiag.Rd
~ /trunk/Matrix/man/Cholesky-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dgRMatrix-class.Rd
~ /trunk/Matrix/man/Diagonal.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsRMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/ltrMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/ndenseMatrix-class.Rd
~ /trunk/Matrix/man/nsparseMatrix-classes.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/man/RsparseMatrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lMatrix.R
~ /trunk/Matrix/R/lsTMatrix.R
~ /trunk/Matrix/R/ltTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/ndenseMatrix.R
~ /trunk/Matrix/R/ngTMatrix.R
~ /trunk/Matrix/R/nsparseMatrix.R
~ /trunk/Matrix/R/nsTMatrix.R
~ /trunk/Matrix/R/ntTMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/Rsparse.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/dgTMatrix.c
~ /trunk/Matrix/src/dgTMatrix.h
x /trunk/Matrix/src/dsTMatrix.c
x /trunk/Matrix/src/dsTMatrix.h
~ /trunk/Matrix/src/dtpMatrix.c
~ /trunk/Matrix/src/dtpMatrix.h
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/dtrMatrix.h
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/SOURCES_C.mkf
+ /trunk/Matrix/src/TMatrix_as.c (copied from /trunk/Matrix/src/dsTMatrix.c@4101)
+ /trunk/Matrix/src/TMatrix_as.h (copied from /trunk/Matrix/src/dsTMatrix.h@4101)
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/dtpMatrix.R
~ /trunk/Matrix/tests/simple.R

Rev 4103 – new DEPS.mkf + reminder on how to

maechler — Mon, 29 Jan 2007 16:04:38 +0000

maechler – 2 file(s) modified
new DEPS.mkf + reminder on how to

~ /trunk/Matrix/src/DEPS.mkf
+ /trunk/Matrix/src/DEPS.mkf_make.sh

Rev 3946 – oops -- forgot this update in last revision

maechler — Thu, 02 Nov 2006 18:22:11 +0000

maechler – 1 file(s) modified
oops -- forgot this update in last revision

~ /trunk/Matrix/src/DEPS.mkf

Rev 3730 – Remove dependencies on triplet_to_col and its source files

bates — Fri, 08 Sep 2006 13:16:55 +0000

bates – 7 file(s) modified
Remove dependencies on triplet_to_col and its source files

~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/HBMM.c
~ /trunk/Matrix/src/HBMM.h
~ /trunk/Matrix/src/lsCMatrix.h
~ /trunk/Matrix/src/SOURCES_C.mkf
x /trunk/Matrix/src/triplet_to_col.c
x /trunk/Matrix/src/triplet_to_col.h

Rev 3678 – Merging changes from Matrix-nolmer branch

bates — Mon, 04 Sep 2006 18:41:34 +0000

bates – 37 file(s) modified
Merging changes from Matrix-nolmer branch

~ /trunk/Matrix/ChangeLog
x /trunk/Matrix/data/sleepstudy.rda
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
x /trunk/Matrix/man/BIC.Rd
x /trunk/Matrix/man/fixef.Rd
x /trunk/Matrix/man/hatTrace.Rd
x /trunk/Matrix/man/lmer-class.Rd
x /trunk/Matrix/man/lmer.Rd
x /trunk/Matrix/man/mcmcsamp.Rd
x /trunk/Matrix/man/pedigree-class.Rd
x /trunk/Matrix/man/pedigree.Rd
x /trunk/Matrix/man/ranef.Rd
x /trunk/Matrix/man/sleepstudy.Rd
x /trunk/Matrix/man/VarCorr-class.Rd
x /trunk/Matrix/man/VarCorr.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/dtCMatrix.R
x /trunk/Matrix/R/lmer.R
x /trunk/Matrix/R/pedigree.R
~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/dtCMatrix.c
~ /trunk/Matrix/src/dtCMatrix.h
~ /trunk/Matrix/src/init.c
x /trunk/Matrix/src/lmer.c
x /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/src/ltCMatrix.c
~ /trunk/Matrix/src/ltCMatrix.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
x /trunk/Matrix/src/pedigree.c
x /trunk/Matrix/src/pedigree.h
~ /trunk/Matrix/src/SOURCES_C.mkf
~ /trunk/Matrix/src/Syms.h
x /trunk/Matrix/tests/lmer.R

Rev 3490 – Replaced R_ldl etc. by CHOLMOD functions

bates — Thu, 24 Aug 2006 18:23:36 +0000

bates – 1 file(s) modified
Replaced R_ldl etc. by CHOLMOD functions

~ /trunk/Matrix/src/DEPS.mkf

Rev 2173 – Remove dgBCMatrix.[ch] and dependencies

bates — Thu, 12 Jan 2006 03:10:29 +0000

bates – 4 file(s) modified
Remove dgBCMatrix.[ch] and dependencies

~ /trunk/Matrix/src/DEPS.mkf
x /trunk/Matrix/src/dgBCMatrix.c
x /trunk/Matrix/src/dgBCMatrix.h
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 1923 – Remove references to Pattern.[ch]

bates — Tue, 11 Oct 2005 15:18:23 +0000

bates – 1 file(s) modified
Remove references to Pattern.[ch]

~ /trunk/Matrix/src/DEPS.mkf

Rev 1840 – Updated DEPS.mkf and some include files

bates — Mon, 19 Sep 2005 23:04:52 +0000

bates – 4 file(s) modified
Updated DEPS.mkf and some include files

~ /trunk/Matrix/src/dense.h
~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/src/Makefile.win

Rev 1548 – Release 0.95-10

bates — Fri, 20 May 2005 03:17:14 +0000

bates – 9 file(s) modified
Release 0.95-10

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/SOURCES_C.mkf
x /trunk/Matrix/src/sscCrosstab.c
x /trunk/Matrix/src/sscCrosstab.h
x /trunk/Matrix/src/ssclme.c
x /trunk/Matrix/src/ssclme.h

Rev 1543 – Fold bCrosstab.[ch] into lmer.[ch]

bates — Tue, 17 May 2005 18:34:27 +0000

bates – 1 file(s) modified
Fold bCrosstab.[ch] into lmer.[ch]

~ /trunk/Matrix/src/DEPS.mkf

Rev 1269 – Coercions and methods for dppMatrix and dspMatrix classes

bates — Tue, 15 Mar 2005 00:44:02 +0000

bates – 2 file(s) modified
Coercions and methods for dppMatrix and dspMatrix classes

~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 1202 – C functions for dtpMatrix class

bates — Thu, 03 Mar 2005 05:16:09 +0000

bates – 5 file(s) modified
C functions for dtpMatrix class

~ /trunk/Matrix/src/DEPS.mkf
+ /trunk/Matrix/src/dtpMatrix.c
+ /trunk/Matrix/src/dtpMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 1190 – Internationalization and localization

bates — Mon, 28 Feb 2005 18:15:21 +0000

bates – 42 file(s) modified
Internationalization and localization

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Doxyfile
+ /trunk/Matrix/inst/po
+ /trunk/Matrix/inst/po/LL
+ /trunk/Matrix/inst/po/LL/LC_MESSAGES
+ /trunk/Matrix/inst/po/LL/LC_MESSAGES/Matrix.mo
+ /trunk/Matrix/inst/po/LL/LC_MESSAGES/R-Matrix.mo
+ /trunk/Matrix/po
+ /trunk/Matrix/po/Matrix.pot
+ /trunk/Matrix/po/R-Matrix.pot
~ /trunk/Matrix/src/bCrosstab.c
x /trunk/Matrix/src/cblas.h
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/dgBCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgTMatrix.c
~ /trunk/Matrix/src/dpoMatrix.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsTMatrix.c
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dtCMatrix.c
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/src/factorizations.c
~ /trunk/Matrix/src/factorizations.h
x /trunk/Matrix/src/flame.c
x /trunk/Matrix/src/flame.h
~ /trunk/Matrix/src/init.c
x /trunk/Matrix/src/ldl.c
x /trunk/Matrix/src/ldl.h
~ /trunk/Matrix/src/lmer.c
x /trunk/Matrix/src/LU.c
x /trunk/Matrix/src/LU.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/SOURCES_C.mkf
~ /trunk/Matrix/src/sscCrosstab.c
~ /trunk/Matrix/src/ssclme.c
~ /trunk/Matrix/src/triplet_to_col.c
~ /trunk/Matrix/src/triplet_to_col.h

Rev 1110 – Coercions and methods for the dsTMatrix class

bates — Thu, 17 Feb 2005 01:18:02 +0000

bates – 9 file(s) modified
Coercions and methods for the dsTMatrix class

+ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/src/DEPS.mkf
+ /trunk/Matrix/src/dsTMatrix.c
+ /trunk/Matrix/src/dsTMatrix.h
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 1090 – Methods and coercions for the dtTMatrix class

bates — Tue, 15 Feb 2005 22:09:12 +0000

bates – 4 file(s) modified
Methods and coercions for the dtTMatrix class

~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 990 – renaming and rearranging classes

bates — Wed, 02 Feb 2005 19:40:26 +0000

bates – 5 file(s) modified
renaming and rearranging classes

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/SOURCES_C.mkf
~ /trunk/Matrix/tests/dpoMatrix.R
~ /trunk/Matrix/TODO

Rev 987 – renaming and rearranging classes

bates — Wed, 02 Feb 2005 19:11:51 +0000

bates – 28 file(s) modified
renaming and rearranging classes

~ /trunk/Matrix/src/bCrosstab.c
~ /trunk/Matrix/src/bCrosstab.h
+ /trunk/Matrix/src/dCholCMatrix.c (copied from /trunk/Matrix/src/sscChol.c@982)
+ /trunk/Matrix/src/dCholCMatrix.h (copied from /trunk/Matrix/src/sscChol.h@982)
~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/dgBCMatrix.c
~ /trunk/Matrix/src/dgBCMatrix.h
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/dgTMatrix.c
~ /trunk/Matrix/src/dgTMatrix.h
x /trunk/Matrix/src/dgTMatrix_to_dgCMatrix.c
x /trunk/Matrix/src/dgTMatrix_to_dgCMatrix.h
~ /trunk/Matrix/src/dpoMatrix.c
~ /trunk/Matrix/src/dpoMatrix.h
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/SOURCES_C.mkf
x /trunk/Matrix/src/sscChol.c
x /trunk/Matrix/src/sscChol.h
~ /trunk/Matrix/src/sscCrosstab.c
~ /trunk/Matrix/src/sscCrosstab.h
+ /trunk/Matrix/src/triplet_to_col.c (copied from /trunk/Matrix/src/dgTMatrix_to_dgCMatrix.c@982)
+ /trunk/Matrix/src/triplet_to_col.h (copied from /trunk/Matrix/src/dgTMatrix_to_dgCMatrix.h@982)

Rev 978 – Renaming and reorganizing classes

bates — Wed, 02 Feb 2005 14:52:26 +0000

bates – 38 file(s) modified
Renaming and reorganizing classes

x /trunk/Matrix/src/cscMatrix.c
x /trunk/Matrix/src/cscMatrix.h
~ /trunk/Matrix/src/DEPS.mkf
+ /trunk/Matrix/src/dgCMatrix.c (copied from /trunk/Matrix/src/cscMatrix.c@977)
+ /trunk/Matrix/src/dgCMatrix.h (copied from /trunk/Matrix/src/cscMatrix.h@977)
+ /trunk/Matrix/src/dgeMatrix.c (copied from /trunk/Matrix/src/geMatrix.c@977)
+ /trunk/Matrix/src/dgeMatrix.h (copied from /trunk/Matrix/src/geMatrix.h@977)
+ /trunk/Matrix/src/dgTMatrix.c (copied from /trunk/Matrix/src/triplet.c@977)
+ /trunk/Matrix/src/dgTMatrix.h (copied from /trunk/Matrix/src/triplet.h@977)
+ /trunk/Matrix/src/dgTMatrix_to_dgCMatrix.c (copied from /trunk/Matrix/src/triplet_to_col.c@977)
+ /trunk/Matrix/src/dgTMatrix_to_dgCMatrix.h (copied from /trunk/Matrix/src/triplet_to_col.h@977)
+ /trunk/Matrix/src/dpoMatrix.c (copied from /trunk/Matrix/src/poMatrix.c@977)
+ /trunk/Matrix/src/dpoMatrix.h (copied from /trunk/Matrix/src/poMatrix.h@977)
+ /trunk/Matrix/src/dsCMatrix.c (copied from /trunk/Matrix/src/sscMatrix.c@977)
+ /trunk/Matrix/src/dsCMatrix.h (copied from /trunk/Matrix/src/sscMatrix.h@977)
+ /trunk/Matrix/src/dsyMatrix.c (copied from /trunk/Matrix/src/syMatrix.c@977)
+ /trunk/Matrix/src/dsyMatrix.h (copied from /trunk/Matrix/src/syMatrix.h@977)
+ /trunk/Matrix/src/dtCMatrix.c (copied from /trunk/Matrix/src/tscMatrix.c@977)
+ /trunk/Matrix/src/dtCMatrix.h (copied from /trunk/Matrix/src/tscMatrix.h@977)
+ /trunk/Matrix/src/dtrMatrix.c (copied from /trunk/Matrix/src/trMatrix.c@977)
+ /trunk/Matrix/src/dtrMatrix.h (copied from /trunk/Matrix/src/trMatrix.h@977)
x /trunk/Matrix/src/geMatrix.c
x /trunk/Matrix/src/geMatrix.h
x /trunk/Matrix/src/poMatrix.c
x /trunk/Matrix/src/poMatrix.h
~ /trunk/Matrix/src/SOURCES_C.mkf
x /trunk/Matrix/src/sscMatrix.c
x /trunk/Matrix/src/sscMatrix.h
x /trunk/Matrix/src/syMatrix.c
x /trunk/Matrix/src/syMatrix.h
x /trunk/Matrix/src/triplet.c
x /trunk/Matrix/src/triplet.h
x /trunk/Matrix/src/triplet_to_col.c
x /trunk/Matrix/src/triplet_to_col.h
x /trunk/Matrix/src/trMatrix.c
x /trunk/Matrix/src/trMatrix.h
x /trunk/Matrix/src/tscMatrix.c
x /trunk/Matrix/src/tscMatrix.h

Rev 885 – Change to the lmer representation

bates — Mon, 03 Jan 2005 19:14:22 +0000

bates – 4 file(s) modified
Change to the lmer representation

~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 806 – R-specific versions of ldl

bates — Sun, 05 Dec 2004 13:50:54 +0000

bates – 2 file(s) modified
R-specific versions of ldl

~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 777 – Extract dependencies to an include file

bates — Sat, 27 Nov 2004 01:44:15 +0000

bates – 3 file(s) modified
Extract dependencies to an include file

+ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/Makefile
~ /trunk/Matrix/src/Makefile.win