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4549 6962 d 10 h maechler /branches/Matrix-APIchange/ port changes (4545..4548) from trunk  
/branches/Matrix-APIchange/man/printSpMatrix.Rd
/branches/Matrix-APIchange/ChangeLog
/branches/Matrix-APIchange/Done
/branches/Matrix-APIchange/NAMESPACE
/branches/Matrix-APIchange/R/Rsparse.R
/branches/Matrix-APIchange/R/Tsparse.R
/branches/Matrix-APIchange/R/ddenseMatrix.R
/branches/Matrix-APIchange/R/dsTMatrix.R
/branches/Matrix-APIchange/R/dtTMatrix.R
/branches/Matrix-APIchange/R/lgCMatrix.R
/branches/Matrix-APIchange/R/ngCMatrix.R
/branches/Matrix-APIchange/R/pMatrix.R
/branches/Matrix-APIchange/R/sparseMatrix.R
/branches/Matrix-APIchange/man/sparseMatrix-class.Rd
/branches/Matrix-APIchange/src/cs_utils.c
/branches/Matrix-APIchange/src/lgCMatrix.c
/branches/Matrix-APIchange/tests/Class+Meth.R
4529 6966 d 9 h bates /branches/Matrix-APIchange/ Creating a branch for the API changes from the 0.99875 series to the 0.999375 series  
/branches/Matrix-APIchange
4468 6981 d 4 h maechler /trunk/Matrix/ + print(<sparse>, extra args)  
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/sparseMatrix-class.Rd
4463 6981 d 23 h bates /trunk/Matrix/ Don't need an interactions class. Use the row names to store the levels - duh  
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
4461 6982 d 4 h bates /trunk/Matrix/ draft "indicators" class  
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/man/sparseMatrix-class.Rd
4444 6990 d 13 h maechler /trunk/Matrix/ few misc.  
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/nMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/tests/simple.R
4386 7005 d 1 h maechler /trunk/Matrix/ export drop0() {name is open for discussion}; document colSums  
/trunk/Matrix/man/colSums.Rd
/trunk/Matrix/man/drop0.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/not.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/kronecker-methods.Rd
/trunk/Matrix/man/spMatrix.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
4371 7007 d 5 h maechler /trunk/Matrix/ sparseVector. <- v; rowSums/colSums; summary(<sparse>); spMatrix(.) utility  
/trunk/Matrix/man/spMatrix.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/Rsparse.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/R/sparseVector.R
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/man/sparseVector-class.Rd
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/simple.R
4354 7012 d 1 h maechler /trunk/Matrix/ part of sparseVector additions; in order to avoid merge conflicts  
/trunk/Matrix/R/sparseVector.R
/trunk/Matrix/man/sparseVector-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
4199 7065 d 7 h maechler /trunk/Matrix/ + diff(.), + "dim<-"; cBind/rBind + cbind/rbind; indexing fixes - current state  
/trunk/Matrix/.Rbuildignore
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/ndenseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/R/zzz.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/Xtrct-methods.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
4104 7119 d 2 h maechler /trunk/Matrix/ many more coercions for diag(), "!", etc; see ChangeLog  
/trunk/Matrix/src/TMatrix_as.c
/trunk/Matrix/src/TMatrix_as.h
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/dsTMatrix.h
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/Rsparse.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/R/lMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lsTMatrix.R
/trunk/Matrix/R/ltTMatrix.R
/trunk/Matrix/R/ndenseMatrix.R
/trunk/Matrix/R/ngTMatrix.R
/trunk/Matrix/R/nsTMatrix.R
/trunk/Matrix/R/nsparseMatrix.R
/trunk/Matrix/R/ntTMatrix.R
/trunk/Matrix/R/pMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/inst/test-tools.R
/trunk/Matrix/man/Cholesky-class.Rd
/trunk/Matrix/man/Diagonal.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/RsparseMatrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/Xtrct-methods.Rd
/trunk/Matrix/man/bdiag.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dgRMatrix-class.Rd
/trunk/Matrix/man/dpoMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dsRMatrix-class.Rd
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/ltrMatrix-class.Rd
/trunk/Matrix/man/ndenseMatrix-class.Rd
/trunk/Matrix/man/nsparseMatrix-classes.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/dgTMatrix.c
/trunk/Matrix/src/dgTMatrix.h
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dgeMatrix.h
/trunk/Matrix/src/dtTMatrix.c
/trunk/Matrix/src/dtpMatrix.c
/trunk/Matrix/src/dtpMatrix.h
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/dtrMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/dtpMatrix.R
/trunk/Matrix/tests/simple.R
4094 7125 d 5 h maechler /trunk/Matrix/ much faster "fancy" adjust in show()  
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/sparseMatrix-class.Rd
4052 7157 d 2 h maechler /trunk/Matrix/ rbind2() / cbind2() methods fixes + new Auxiliaries  
/trunk/Matrix/R/bind2.R
/trunk/Matrix/man/atomicVector-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/tests/bind.R
/trunk/Matrix/tests/bind.Rout.save
3950 7205 d 23 h maechler /trunk/Matrix/ fully-sparse solve() for dsC; indexing & comparison fixes  
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/lsTMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsCMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
/trunk/Matrix/tests/validObj.R
3931 7213 d 5 h maechler /trunk/Matrix/ miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/HBMM.R
/trunk/Matrix/R/Hilbert.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/lMatrix.R
/trunk/Matrix/R/pMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/ddiMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/ldiMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
/trunk/Matrix/tests/validObj.R
3780 7255 d 8 h maechler /trunk/Matrix/ Matrix <-> graph coercion update (for R 2.4.0)  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/tests/other-pkgs.R
3541 7268 d 23 h bates /trunk/Matrix/ What was I thinking? I checked in files without running R CMD check and adding documentation for methods. Now fixed.  
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/sparseMatrix-class.Rd
3534 7269 d 7 h maechler /trunk/Matrix/ miscellaneous tweaks; moved some method definitions higher up  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
3218 7354 d 13 h maechler /trunk/Matrix/ implemented all 4 of {rowSums(), ... colMeans()}  
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/tests/base-matrix-fun.R
3175 7369 d 7 h maechler /trunk/Matrix/man/ start massive use of \linkS4class{.}  
/trunk/Matrix/man/CAex.Rd
/trunk/Matrix/man/CHMfactor-class.Rd
/trunk/Matrix/man/Cholesky-class.Rd
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Diagonal.Rd
/trunk/Matrix/man/Hilbert.Rd
/trunk/Matrix/man/LU-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Matrix.Rd
/trunk/Matrix/man/RsparseMatrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/VarCorr.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/compMatrix-class.Rd
/trunk/Matrix/man/dCholCMatrix-class.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/ddiMatrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgRMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/dpoMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dsRMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/dsyMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/dtRMatrix-class-def.Rd
/trunk/Matrix/man/dtpMatrix-class.Rd
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/man/expm.Rd
/trunk/Matrix/man/generalMatrix-class.Rd
/trunk/Matrix/man/index-class.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/ldiMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/lsyMatrix-class.Rd
/trunk/Matrix/man/ltrMatrix-class.Rd
/trunk/Matrix/man/lu.Rd
/trunk/Matrix/man/mcmcsamp.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/man/pedigree-class.Rd
/trunk/Matrix/man/pedigree.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/man/symmetricMatrix-class.Rd
/trunk/Matrix/man/tcrossprod.Rd
/trunk/Matrix/man/triangularMatrix-class.Rd
/trunk/Matrix/man/unused-classes.Rd

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