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4529 6966 d 5 h bates /branches/Matrix-APIchange/ Creating a branch for the API changes from the 0.99875 series to the 0.999375 series  
/branches/Matrix-APIchange
4483 6978 d 2 h maechler /trunk/Matrix/ colSums, ... rowMeans for all Matrices; notably sparse ones via [diln]gCMatrix_colSums C code  
/trunk/Matrix/R/colSums.R
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Rsparse.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/R/sparseVector.R
/trunk/Matrix/TODO
/trunk/Matrix/inst/test-tools.R
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/RsparseMatrix-class.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/colSums.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/tests/simple.R
4032 7163 d 6 h maechler /trunk/Matrix/ any(), all() and "Compare"(<sparse>) - for release of 0.9975-7  
/trunk/Matrix/man/all-methods.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/lMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lsparseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/simple.R
3943 7207 d 7 h maechler /trunk/Matrix/ tcrossprod(<Csp>, <Csp>); dimnames for [t]crossprod; validity now ensures correct length(Dimnames[[j]])  
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/chm_common.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lgCMatrix.c
/trunk/Matrix/src/lgCMatrix.h
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
3942 7208 d 0 h maechler /trunk/Matrix/ extend Csparse_Csparse_crossprod for tcrossprod (need test!); isSymmetric improved; misc.  
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/init.c
3940 7208 d 2 h bates /trunk/Matrix/ crossprod(<CsparseMatrix>,<CsparseMatrix>) added  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/init.c
/trunk/Matrix/tests/matprod.R
3755 7258 d 20 h maechler /trunk/Matrix/ new nMatrix and subclasses; lsparse change to have x slot; many consequences  
/trunk/Matrix/R/lMatrix.R
/trunk/Matrix/R/ndenseMatrix.R
/trunk/Matrix/R/ngCMatrix.R
/trunk/Matrix/R/ngTMatrix.R
/trunk/Matrix/R/nsCMatrix.R
/trunk/Matrix/R/nsparseMatrix.R
/trunk/Matrix/R/ntCMatrix.R
/trunk/Matrix/R/ntTMatrix.R
/trunk/Matrix/man/nMatrix-class.Rd
/trunk/Matrix/man/ndenseMatrix-class.Rd
/trunk/Matrix/man/ndiMatrix-class.Rd
/trunk/Matrix/man/ngeMatrix-class.Rd
/trunk/Matrix/man/nsparseMatrix-classes.Rd
/trunk/Matrix/man/nsyMatrix-class.Rd
/trunk/Matrix/man/ntrMatrix-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgCMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lsparseMatrix.R
/trunk/Matrix/R/pMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/inst/doc/Intro2Matrix.Rnw
/trunk/Matrix/inst/test-tools.R
/trunk/Matrix/man/CHMfactor-class.Rd
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/lsyMatrix-class.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/Tsparse.c
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/chm_common.h
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/dtTMatrix.c
/trunk/Matrix/src/init.c
/trunk/Matrix/src/ldense.c
/trunk/Matrix/src/ldense.h
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
3534 7269 d 3 h maechler /trunk/Matrix/ miscellaneous tweaks; moved some method definitions higher up  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
3520 7271 d 20 h bates /trunk/Matrix/ Promotion of %*% and solve to RHS of ddenseMatrix  
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dspMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/dsyMatrix-class.Rd
/trunk/Matrix/man/dtpMatrix-class.Rd
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dgeMatrix.h
/trunk/Matrix/src/dspMatrix.c
/trunk/Matrix/src/dspMatrix.h
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dsyMatrix.h
/trunk/Matrix/src/dtpMatrix.c
/trunk/Matrix/src/dtpMatrix.h
/trunk/Matrix/src/dtrMatrix.c
3517 7272 d 4 h bates /trunk/Matrix/ Promote %*% methods to ddenseMatrix class  
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
3413 7286 d 0 h maechler /trunk/Matrix/man/ update methods list  
/trunk/Matrix/man/CsparseMatrix-class.Rd
3405 7286 d 23 h bates /trunk/Matrix/ Use CHOLMOD code for general methods at CsparseMatrix, TsparseMatrix, denseMatrix or matrix level when possible  
/trunk/Matrix/ChangeLog
/trunk/Matrix/man/CsparseMatrix-class.Rd
3403 7289 d 1 h bates /trunk/Matrix/ Generalize conversions  
/trunk/Matrix/ChangeLog
/trunk/Matrix/INDEX
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
3340 7310 d 0 h maechler /trunk/Matrix/ many method cleanups; notably some "dgC" -> "Csparse" generaliztations  
/trunk/Matrix/man/replValue-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/pedigree.R
/trunk/Matrix/TODO
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/tests/bind.R
/trunk/Matrix/tests/bind.Rout.save
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
3338 7311 d 11 h maechler /trunk/Matrix/ miscellaneous mostly related to sparse indexing  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/Done
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgRMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/dgRMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
3218 7354 d 9 h maechler /trunk/Matrix/ implemented all 4 of {rowSums(), ... colMeans()}  
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/tests/base-matrix-fun.R
3175 7369 d 3 h maechler /trunk/Matrix/man/ start massive use of \linkS4class{.}  
/trunk/Matrix/man/CAex.Rd
/trunk/Matrix/man/CHMfactor-class.Rd
/trunk/Matrix/man/Cholesky-class.Rd
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Diagonal.Rd
/trunk/Matrix/man/Hilbert.Rd
/trunk/Matrix/man/LU-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Matrix.Rd
/trunk/Matrix/man/RsparseMatrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/VarCorr.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/compMatrix-class.Rd
/trunk/Matrix/man/dCholCMatrix-class.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/ddiMatrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgRMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/dpoMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dsRMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/dsyMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/dtRMatrix-class-def.Rd
/trunk/Matrix/man/dtpMatrix-class.Rd
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/man/expm.Rd
/trunk/Matrix/man/generalMatrix-class.Rd
/trunk/Matrix/man/index-class.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/ldiMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/lsyMatrix-class.Rd
/trunk/Matrix/man/ltrMatrix-class.Rd
/trunk/Matrix/man/lu.Rd
/trunk/Matrix/man/mcmcsamp.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/man/pedigree-class.Rd
/trunk/Matrix/man/pedigree.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/man/symmetricMatrix-class.Rd
/trunk/Matrix/man/tcrossprod.Rd
/trunk/Matrix/man/triangularMatrix-class.Rd
/trunk/Matrix/man/unused-classes.Rd
2059 7534 d 21 h maechler /trunk/Matrix/ make tcrossprod() use 2 arguments (x, y=NULL)  
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/lgCMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/tcrossprod.Rd
/trunk/Matrix/tests/dtpMatrix.R
2022 7550 d 20 h bates /trunk/Matrix/ Matrix multiplication and coersion at higher level  
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/Makefile
/trunk/Matrix/src/Makefile.win
/trunk/Matrix/src/Tsparse.c
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dense.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgTMatrix.c
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/init.c
1833 7615 d 23 h maechler /trunk/Matrix/ too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for sparse ones; more "s/gTMatrix/TsparseMatrix/" fixes; quite a few more tests, incl some for *all* classes  
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lsparseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/inst/test-tools.R
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/Xtrct-methods.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/dsyMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/bind.R
/trunk/Matrix/tests/dgTMatrix.R
/trunk/Matrix/tests/group-methods.R
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/matprod.R