R-packages – /branches/Matrix-APIchange/TODO

Rev 4529 – Creating a branch for the API changes from the 0.99875 ...

bates — Sun, 01 Jul 2007 13:27:16 +0000

bates – 1 file(s) modified
Creating a branch for the API changes from the 0.99875 series to the 0.999375 series

+ /branches/Matrix-APIchange (copied from /trunk/Matrix@4528)

Rev 4501 – xsparseVector etc (smarter coercions)

maechler — Sat, 23 Jun 2007 18:08:48 +0000

maechler – 11 file(s) modified
xsparseVector etc (smarter coercions)

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/inst/doc/Intro2Matrix.Rnw
~ /trunk/Matrix/man/colSums.Rd
~ /trunk/Matrix/man/sparseVector-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/colSums.R
~ /trunk/Matrix/R/sparseVector.R
~ /trunk/Matrix/TODO

Rev 4483 – colSums, ... rowMeans for all Matrices; notably sparse ones via ...

maechler — Tue, 19 Jun 2007 16:16:58 +0000

maechler – 25 file(s) modified
colSums, ... rowMeans for all Matrices; notably sparse ones via [diln]gCMatrix_colSums C code

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/man/colSums.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/RsparseMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
+ /trunk/Matrix/R/colSums.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/Rsparse.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/sparseVector.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 4444 – few misc.

maechler — Thu, 07 Jun 2007 09:04:34 +0000

maechler – 6 file(s) modified
few misc.

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/nMatrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 4422 – give message on suppressed column names

maechler — Tue, 05 Jun 2007 16:28:55 +0000

maechler – 5 file(s) modified
give message on suppressed column names

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/TODO

Rev 4386 – export drop0() {name is open for discussion}; document colSums

maechler — Wed, 23 May 2007 21:33:34 +0000

maechler – 13 file(s) modified
export drop0() {name is open for discussion}; document colSums

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
+ /trunk/Matrix/man/colSums.Rd
+ /trunk/Matrix/man/drop0.Rd
~ /trunk/Matrix/man/kronecker-methods.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/spMatrix.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/not.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/TODO

Rev 4354 – part of sparseVector additions; in order to avoid merge conflicts

maechler — Wed, 16 May 2007 21:24:41 +0000

maechler – 21 file(s) modified
part of sparseVector additions; in order to avoid merge conflicts

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/diagonalMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
+ /trunk/Matrix/man/sparseVector-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/sparseMatrix.R
+ /trunk/Matrix/R/sparseVector.R
~ /trunk/Matrix/TODO

Rev 4333 – fix duplicated subassigment: A[c(1,2,1),3] <- ..

maechler — Tue, 08 May 2007 12:25:57 +0000

maechler – 6 file(s) modified
fix duplicated subassigment: A[c(1,2,1),3] <- ..

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/TODO

Rev 4199 – + diff(.), + "dim<-"; cBind/rBind + cbind/rbind; indexing fixes ...

maechler — Sat, 24 Mar 2007 14:54:00 +0000

maechler – 24 file(s) modified
+ diff(.), + "dim<-"; cBind/rBind + cbind/rbind; indexing fixes - current state

~ /trunk/Matrix/.Rbuildignore
~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/diagonalMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/ndenseMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/R/zzz.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/TODO

Rev 4136 – forgot free(.) in R_to_C; other cosmetic

maechler — Tue, 06 Feb 2007 17:41:42 +0000

maechler – 3 file(s) modified
forgot free(.) in R_to_C; other cosmetic

~ /trunk/Matrix/inst/doc/myVignette.sty
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/TODO

Rev 4109 – drop(); tweaks to Ops & indexing; Rsparse coercions for less ...

maechler — Tue, 30 Jan 2007 17:41:02 +0000

maechler – 28 file(s) modified
drop(); tweaks to Ops & indexing; Rsparse coercions for less exceptions in tests/Class+Meth.R

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/man/nsparseMatrix-classes.Rd
~ /trunk/Matrix/man/RsparseMatrix-class.Rd
~ /trunk/Matrix/man/sparseQR-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/lsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/nsparseMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/Rsparse.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 4095 – nnzero(), length(), "Ops" & "Logic", many more setAs(); misc.fixes

maechler — Tue, 23 Jan 2007 17:17:15 +0000

maechler – 41 file(s) modified
nnzero(), length(), "Ops" & "Logic", many more setAs(); misc.fixes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CHMfactor-class.Rd
~ /trunk/Matrix/man/Cholesky.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dtRMatrix-class-def.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/ndenseMatrix-class.Rd
~ /trunk/Matrix/man/ngeMatrix-class.Rd
+ /trunk/Matrix/man/nnzero.Rd
~ /trunk/Matrix/man/nsparseMatrix-classes.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/lsTMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/ltTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/ndenseMatrix.R
~ /trunk/Matrix/R/ngTMatrix.R
~ /trunk/Matrix/R/nsCMatrix.R
~ /trunk/Matrix/R/ntCMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/pMatrix.R
+ /trunk/Matrix/R/triangularMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 4082 – accomplished quite a few small FIXMEs; see ChangeLog

maechler — Wed, 17 Jan 2007 08:01:10 +0000

maechler – 22 file(s) modified
accomplished quite a few small FIXMEs; see ChangeLog

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/lsparseMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 4064 – move Ops to new Ops.R; start using "Logic"

maechler — Thu, 28 Dec 2006 22:11:32 +0000

maechler – 19 file(s) modified
move Ops to new Ops.R; start using "Logic"

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/ndenseMatrix-class.Rd
~ /trunk/Matrix/man/ngeMatrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/ndenseMatrix.R
+ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/TODO

Rev 3959 – host of changes; mostly indexing(sub-set & -assign) for symmetric and ...

maechler — Mon, 06 Nov 2006 20:54:26 +0000

maechler – 21 file(s) modified
host of changes; mostly indexing(sub-set & -assign) for symmetric and [ cbind(i,j) ]

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/R/zzz.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/validObj.R
~ /trunk/Matrix/TODO

Rev 3942 – extend Csparse_Csparse_crossprod for tcrossprod (need test!); isSymmetric improved; misc.

maechler — Wed, 01 Nov 2006 17:50:15 +0000

maechler – 13 file(s) modified
extend Csparse_Csparse_crossprod for tcrossprod (need test!); isSymmetric improved; misc.

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/TODO

Rev 3933 – another set of fixes/improvements; the last prompted by Harri Kiiveri

maechler — Mon, 30 Oct 2006 17:16:27 +0000

maechler – 22 file(s) modified
another set of fixes/improvements; the last prompted by Harri Kiiveri

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgRMatrix-class.Rd
~ /trunk/Matrix/man/diagonalMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/RsparseMatrix-class.Rd
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgRMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 3931 – miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix

maechler — Fri, 27 Oct 2006 16:58:15 +0000

maechler – 38 file(s) modified
miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/ddiMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/diagonalMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/ldiMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/HBMM.R
~ /trunk/Matrix/R/Hilbert.R
~ /trunk/Matrix/R/lMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/tests/validObj.R
~ /trunk/Matrix/TODO

Rev 3877 – use Csparse_drop at least once

maechler — Fri, 06 Oct 2006 21:29:15 +0000

maechler – 5 file(s) modified
use Csparse_drop at least once

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/tests/bind.Rout.save
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 3828 – "Compare" for "dMatrix"; plus a few small ones

maechler — Thu, 28 Sep 2006 15:31:17 +0000

maechler – 11 file(s) modified
"Compare" for "dMatrix"; plus a few small ones

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/dtpMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/TODO

Rev 3795 – Update. Move lmer-related TODOs to lme4

bates — Mon, 18 Sep 2006 21:02:50 +0000

bates – 2 file(s) modified
Update. Move lmer-related TODOs to lme4

~ /trunk/Matrix/Done
~ /trunk/Matrix/TODO

Rev 3791 – check 'x' slot in l.CMatrix_validate

maechler — Mon, 18 Sep 2006 14:47:40 +0000

maechler – 16 file(s) modified
check 'x' slot in l.CMatrix_validate

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/lgCMatrix.c
~ /trunk/Matrix/src/lsCMatrix.c
~ /trunk/Matrix/src/ltCMatrix.c
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/TODO

Rev 3374 – tril() etc also for T* and Rsparse

maechler — Mon, 07 Aug 2006 09:05:42 +0000

maechler – 7 file(s) modified
tril() etc also for T* and Rsparse

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dgRMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/TODO

Rev 3357 – More things to do

bates — Mon, 31 Jul 2006 23:08:21 +0000

bates – 1 file(s) modified
More things to do

~ /trunk/Matrix/TODO

Rev 3340 – many method cleanups; notably some "dgC" -> "Csparse" generaliztations

maechler — Sat, 22 Jul 2006 17:59:53 +0000

maechler – 41 file(s) modified
many method cleanups; notably some "dgC" -> "Csparse" generaliztations

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
+ /trunk/Matrix/man/replValue-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/pedigree.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/tests/bind.R
~ /trunk/Matrix/tests/bind.Rout.save
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 3338 – miscellaneous mostly related to sparse indexing

maechler — Fri, 21 Jul 2006 06:47:06 +0000

maechler – 17 file(s) modified
miscellaneous mostly related to sparse indexing

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/dgRMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgRMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/TODO

Rev 3334 – head and tail methods and reminder in TODO of classes ...

bates — Wed, 19 Jul 2006 14:58:26 +0000

bates – 2 file(s) modified
head and tail methods and reminder in TODO of classes after subscripting

~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/TODO

Rev 3330 – Finish the sentence

bates — Mon, 17 Jul 2006 18:31:12 +0000

bates – 1 file(s) modified
Finish the sentence

~ /trunk/Matrix/TODO

Rev 3310 – miscellaneous small things, including extended tests; see also ChangeLog

maechler — Mon, 10 Jul 2006 16:08:05 +0000

maechler – 22 file(s) modified
miscellaneous small things, including extended tests; see also ChangeLog

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/lu.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/tests/base-matrix-fun.R
~ /trunk/Matrix/tests/bind.R
+ /trunk/Matrix/tests/bind.Rout.save
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 3218 – implemented all 4 of {rowSums(), ... colMeans()}

maechler — Thu, 08 Jun 2006 09:30:21 +0000

maechler – 19 file(s) modified
implemented all 4 of {rowSums(), ... colMeans()}

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/base-matrix-fun.R
~ /trunk/Matrix/TODO

Rev 3078 – tT -> tC; and diagU2N() for solve()

maechler — Wed, 19 Apr 2006 09:17:14 +0000

maechler – 6 file(s) modified
tT -> tC; and diagU2N() for solve(<dtC>)

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 3060 – fix for %*%

maechler — Wed, 12 Apr 2006 20:31:18 +0000

maechler – 4 file(s) modified
fix for <sparse> %*% <integer_matrix>

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/TODO

Rev 3054 – Added qqmath method for ranef.lmer and postVar for ranef methods

bates — Sun, 09 Apr 2006 00:02:26 +0000

bates – 9 file(s) modified
Added qqmath method for ranef.lmer and postVar for ranef methods

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/TODO

Rev 3027 – Propagate DimNames in dsyMatrix_as_dspMatrix

bates — Thu, 23 Mar 2006 15:16:17 +0000

bates – 5 file(s) modified
Propagate DimNames in dsyMatrix_as_dspMatrix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/tests/lmer.R
~ /trunk/Matrix/TODO

Rev 3023 – Updated the ToDo list to mention pedigree, lmer and glmer ...

bates — Tue, 21 Mar 2006 11:23:49 +0000

bates – 1 file(s) modified
Updated the ToDo list to mention pedigree, lmer and glmer classes.

~ /trunk/Matrix/TODO

Rev 2362 – put "mm" and "y" datasets into list "KNex" and change ...

maechler — Wed, 15 Mar 2006 17:43:34 +0000

maechler – 20 file(s) modified
put "mm" and "y" datasets into list "KNex" and change the docu, examples, tests, and one vignette accordingly;
ready for release of 0.995-6

~ /trunk/Matrix/ChangeLog
+ /trunk/Matrix/data/KNex.rda
x /trunk/Matrix/data/mm.rda
x /trunk/Matrix/data/y.rda
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/inst/doc/Comparisons.Rnw
~ /trunk/Matrix/man/dCholCMatrix-class.Rd
~ /trunk/Matrix/man/externalFormats.Rd
+ /trunk/Matrix/man/KNex.Rd (copied from /trunk/Matrix/man/mm.Rd@2360)
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
x /trunk/Matrix/man/mm.Rd
x /trunk/Matrix/man/y.Rd
~ /trunk/Matrix/tests/base-matrix-fun.R
~ /trunk/Matrix/tests/dg_Matrix.R
+ /trunk/Matrix/tests/dpoMatrix.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/mm-redo.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 2357 – sparse: "[<-" and better arithmetic; other tweaks

maechler — Mon, 13 Mar 2006 14:07:58 +0000

maechler – 26 file(s) modified
sparse: "[<-" and better arithmetic; other tweaks

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsyMatrix-class.Rd
~ /trunk/Matrix/man/ltrMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/group-methods.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/TODO

Rev 2355 – Update documentation to new lmer class structure

bates — Mon, 13 Mar 2006 13:05:33 +0000

bates – 4 file(s) modified
Update documentation to new lmer class structure

~ /trunk/Matrix/Done
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/lmer-class.Rd
~ /trunk/Matrix/TODO

Rev 2255 – Class cleanup; particularly ldense* ones

maechler — Mon, 23 Jan 2006 16:04:12 +0000

maechler – 24 file(s) modified
Class cleanup; particularly ldense* ones

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgRMatrix-class.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/lsyMatrix-class.Rd
~ /trunk/Matrix/man/ltrMatrix-class.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
x /trunk/Matrix/R/lgeMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/ltTMatrix.R
~ /trunk/Matrix/TODO

Rev 2146 – Fix due to Peter Dalgaard for segfault with multiple non-nested ...

bates — Sat, 07 Jan 2006 19:52:37 +0000

bates – 5 file(s) modified
Fix due to Peter Dalgaard for segfault with multiple non-nested grouping factors; Version 0.99-5

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/src/dgBCMatrix.c
~ /trunk/Matrix/TODO