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4529 6966 d 3 h bates /branches/Matrix-APIchange/ Creating a branch for the API changes from the 0.99875 series to the 0.999375 series  
/branches/Matrix-APIchange
4501 6973 d 22 h maechler /trunk/Matrix/ xsparseVector etc (smarter coercions)  
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/colSums.R
/trunk/Matrix/R/sparseVector.R
/trunk/Matrix/TODO
/trunk/Matrix/inst/doc/Intro2Matrix.Rnw
/trunk/Matrix/man/colSums.Rd
/trunk/Matrix/man/sparseVector-class.Rd
4461 6981 d 22 h bates /trunk/Matrix/ draft "indicators" class  
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/man/sparseMatrix-class.Rd
4354 7011 d 19 h maechler /trunk/Matrix/ part of sparseVector additions; in order to avoid merge conflicts  
/trunk/Matrix/R/sparseVector.R
/trunk/Matrix/man/sparseVector-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
4199 7065 d 2 h maechler /trunk/Matrix/ + diff(.), + "dim<-"; cBind/rBind + cbind/rbind; indexing fixes - current state  
/trunk/Matrix/.Rbuildignore
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/ndenseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/R/zzz.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/Xtrct-methods.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
4109 7117 d 23 h maechler /trunk/Matrix/ drop(); tweaks to Ops & indexing; Rsparse coercions for less exceptions in tests/Class+Meth.R  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/Rsparse.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/lsparseMatrix.R
/trunk/Matrix/R/nsparseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Matrix.Rd
/trunk/Matrix/man/RsparseMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/nsparseMatrix-classes.Rd
/trunk/Matrix/man/sparseQR-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/cs_utils.c
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/simple.R
4095 7124 d 23 h maechler /trunk/Matrix/ nnzero(), length(), "Ops" & "Logic", many more setAs(); misc.fixes  
/trunk/Matrix/R/triangularMatrix.R
/trunk/Matrix/man/nnzero.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/lsTMatrix.R
/trunk/Matrix/R/ltCMatrix.R
/trunk/Matrix/R/ltTMatrix.R
/trunk/Matrix/R/ndenseMatrix.R
/trunk/Matrix/R/ngTMatrix.R
/trunk/Matrix/R/nsCMatrix.R
/trunk/Matrix/R/ntCMatrix.R
/trunk/Matrix/R/pMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/CHMfactor-class.Rd
/trunk/Matrix/man/Cholesky.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dtRMatrix-class-def.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/ndenseMatrix-class.Rd
/trunk/Matrix/man/ngeMatrix-class.Rd
/trunk/Matrix/man/nsparseMatrix-classes.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/tests/simple.R
4055 7153 d 0 h maechler /trunk/Matrix/ more "[<-" fixes; validity of triangular sparse  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/dtCMatrix.c
/trunk/Matrix/src/dtCMatrix.h
/trunk/Matrix/src/dtTMatrix.c
/trunk/Matrix/src/dtTMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/simple.R
4052 7156 d 21 h maechler /trunk/Matrix/ rbind2() / cbind2() methods fixes + new Auxiliaries  
/trunk/Matrix/R/bind2.R
/trunk/Matrix/man/atomicVector-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/tests/bind.R
/trunk/Matrix/tests/bind.Rout.save
3950 7205 d 17 h maechler /trunk/Matrix/ fully-sparse solve() for dsC; indexing & comparison fixes  
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/lsTMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsCMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
/trunk/Matrix/tests/validObj.R
3944 7207 d 3 h maechler /trunk/Matrix/ 2nd round of cleanup for <sparse>_validate()  
/trunk/Matrix/src/lgTMatrix.c
/trunk/Matrix/src/lgTMatrix.h
/trunk/Matrix/src/lsCMatrix.c
/trunk/Matrix/src/lsCMatrix.h
/trunk/Matrix/src/ltCMatrix.c
/trunk/Matrix/src/ltCMatrix.h
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/Tsparse.c
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/dgTMatrix.c
/trunk/Matrix/src/dgTMatrix.h
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsCMatrix.h
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/dsTMatrix.h
/trunk/Matrix/src/dtCMatrix.c
/trunk/Matrix/src/dtCMatrix.h
/trunk/Matrix/src/dtTMatrix.c
/trunk/Matrix/src/dtTMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lgCMatrix.c
3943 7207 d 5 h maechler /trunk/Matrix/ tcrossprod(<Csp>, <Csp>); dimnames for [t]crossprod; validity now ensures correct length(Dimnames[[j]])  
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/chm_common.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lgCMatrix.c
/trunk/Matrix/src/lgCMatrix.h
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
3931 7212 d 23 h maechler /trunk/Matrix/ miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/HBMM.R
/trunk/Matrix/R/Hilbert.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/lMatrix.R
/trunk/Matrix/R/pMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/ddiMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/ldiMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
/trunk/Matrix/tests/validObj.R
3912 7219 d 19 h maechler /trunk/Matrix/ small changes related to "corMatrix" and other newly seen classes in tests/Class+Meth.R  
/trunk/Matrix/R/corMatrix.R
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/man/dpoMatrix-class.Rd
/trunk/Matrix/tests/Class+Meth.R
3836 7241 d 7 h maechler /trunk/Matrix/ more coercion methods (for rare matrices) => less exceptions  
/trunk/Matrix/R/lsTMatrix.R
/trunk/Matrix/R/nsTMatrix.R
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dgRMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/ntTMatrix.R
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/nsparseMatrix-classes.Rd
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/indexing.R
3791 7252 d 2 h maechler /trunk/Matrix/ check 'x' slot in l.CMatrix_validate  
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/lgCMatrix.c
/trunk/Matrix/src/lsCMatrix.c
/trunk/Matrix/src/ltCMatrix.c
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
3787 7253 d 19 h maechler /trunk/Matrix/ several small fixes + more tests for "lMatrix" classes; "Compare"; "chol"  
/trunk/Matrix/man/ndiMatrix-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/dppMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/lMatrix.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/ltCMatrix.R
/trunk/Matrix/R/nsCMatrix.R
/trunk/Matrix/man/Cholesky-class.Rd
/trunk/Matrix/man/Cholesky.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/tests/group-methods.R
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/other-pkgs.R
3767 7257 d 1 h bates /trunk/Matrix/R/ Apply the validity method we defined  
/trunk/Matrix/R/AllClass.R
3755 7258 d 18 h maechler /trunk/Matrix/ new nMatrix and subclasses; lsparse change to have x slot; many consequences  
/trunk/Matrix/R/lMatrix.R
/trunk/Matrix/R/ndenseMatrix.R
/trunk/Matrix/R/ngCMatrix.R
/trunk/Matrix/R/ngTMatrix.R
/trunk/Matrix/R/nsCMatrix.R
/trunk/Matrix/R/nsparseMatrix.R
/trunk/Matrix/R/ntCMatrix.R
/trunk/Matrix/R/ntTMatrix.R
/trunk/Matrix/man/nMatrix-class.Rd
/trunk/Matrix/man/ndenseMatrix-class.Rd
/trunk/Matrix/man/ndiMatrix-class.Rd
/trunk/Matrix/man/ngeMatrix-class.Rd
/trunk/Matrix/man/nsparseMatrix-classes.Rd
/trunk/Matrix/man/nsyMatrix-class.Rd
/trunk/Matrix/man/ntrMatrix-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgCMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lsparseMatrix.R
/trunk/Matrix/R/pMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/inst/doc/Intro2Matrix.Rnw
/trunk/Matrix/inst/test-tools.R
/trunk/Matrix/man/CHMfactor-class.Rd
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/lsyMatrix-class.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/Tsparse.c
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/chm_common.h
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/dtTMatrix.c
/trunk/Matrix/src/init.c
/trunk/Matrix/src/ldense.c
/trunk/Matrix/src/ldense.h
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
3678 7265 d 22 h bates /trunk/Matrix/ Merging changes from Matrix-nolmer branch  
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/pedigree.R
/trunk/Matrix/data/sleepstudy.rda
/trunk/Matrix/man/BIC.Rd
/trunk/Matrix/man/VarCorr-class.Rd
/trunk/Matrix/man/VarCorr.Rd
/trunk/Matrix/man/fixef.Rd
/trunk/Matrix/man/hatTrace.Rd
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/man/mcmcsamp.Rd
/trunk/Matrix/man/pedigree-class.Rd
/trunk/Matrix/man/pedigree.Rd
/trunk/Matrix/man/ranef.Rd
/trunk/Matrix/man/sleepstudy.Rd
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
/trunk/Matrix/src/pedigree.c
/trunk/Matrix/src/pedigree.h
/trunk/Matrix/tests/lmer.R
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/INDEX
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/Syms.h
/trunk/Matrix/src/dtCMatrix.c
/trunk/Matrix/src/dtCMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/ltCMatrix.c
/trunk/Matrix/src/ltCMatrix.h

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