R-packages – /branches/Matrix-APIchange/NAMESPACE

Rev 4549 – port changes (4545..4548) from trunk

maechler — Thu, 05 Jul 2007 12:22:06 +0000

maechler – 17 file(s) modified
port changes (4545..4548) from trunk

~ /branches/Matrix-APIchange/ChangeLog
~ /branches/Matrix-APIchange/Done
+ /branches/Matrix-APIchange/man/printSpMatrix.Rd (copied from /trunk/Matrix/man/printSpMatrix.Rd@4548)
~ /branches/Matrix-APIchange/man/sparseMatrix-class.Rd
~ /branches/Matrix-APIchange/NAMESPACE
~ /branches/Matrix-APIchange/R/ddenseMatrix.R
~ /branches/Matrix-APIchange/R/dsTMatrix.R
~ /branches/Matrix-APIchange/R/dtTMatrix.R
~ /branches/Matrix-APIchange/R/lgCMatrix.R
~ /branches/Matrix-APIchange/R/ngCMatrix.R
~ /branches/Matrix-APIchange/R/pMatrix.R
~ /branches/Matrix-APIchange/R/Rsparse.R
~ /branches/Matrix-APIchange/R/sparseMatrix.R
~ /branches/Matrix-APIchange/R/Tsparse.R
~ /branches/Matrix-APIchange/src/cs_utils.c
~ /branches/Matrix-APIchange/src/lgCMatrix.c
~ /branches/Matrix-APIchange/tests/Class+Meth.R

Rev 4529 – Creating a branch for the API changes from the 0.99875 ...

bates — Sun, 01 Jul 2007 13:27:16 +0000

bates – 1 file(s) modified
Creating a branch for the API changes from the 0.99875 series to the 0.999375 series

+ /branches/Matrix-APIchange (copied from /trunk/Matrix@4528)

Rev 4527 – add session- and hardware-info to Comparisons

maechler — Sat, 30 Jun 2007 09:05:11 +0000

maechler – 3 file(s) modified
add session- and hardware-info to Comparisons

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/inst/doc/Comparisons.Rnw
~ /trunk/Matrix/NAMESPACE

Rev 4501 – xsparseVector etc (smarter coercions)

maechler — Sat, 23 Jun 2007 18:08:48 +0000

maechler – 11 file(s) modified
xsparseVector etc (smarter coercions)

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/inst/doc/Intro2Matrix.Rnw
~ /trunk/Matrix/man/colSums.Rd
~ /trunk/Matrix/man/sparseVector-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/colSums.R
~ /trunk/Matrix/R/sparseVector.R
~ /trunk/Matrix/TODO

Rev 4468 – + print(, extra args)

maechler — Sat, 16 Jun 2007 18:31:51 +0000

maechler – 5 file(s) modified
+ print(<sparse>, extra args)

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/sparseMatrix.R

Rev 4386 – export drop0() {name is open for discussion}; document colSums

maechler — Wed, 23 May 2007 21:33:34 +0000

maechler – 13 file(s) modified
export drop0() {name is open for discussion}; document colSums

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
+ /trunk/Matrix/man/colSums.Rd
+ /trunk/Matrix/man/drop0.Rd
~ /trunk/Matrix/man/kronecker-methods.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/spMatrix.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/not.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/TODO

Rev 4371 – sparseVector. <- v; rowSums/colSums; summary(); spMatrix(.) utility

maechler — Mon, 21 May 2007 16:42:35 +0000

maechler – 16 file(s) modified
sparseVector. <- v; rowSums/colSums; summary(<sparse>); spMatrix(.) utility

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/sparseVector-class.Rd
+ /trunk/Matrix/man/spMatrix.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/Rsparse.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/sparseVector.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/simple.R

Rev 4355 – forgotten in last commit

maechler — Wed, 16 May 2007 22:58:02 +0000

maechler – 1 file(s) modified
forgotten in last commit

~ /trunk/Matrix/NAMESPACE

Rev 4207 – omit cbind/rbind again, and use cBind/rBind only

maechler — Tue, 27 Mar 2007 16:44:46 +0000

maechler – 3 file(s) modified
omit cbind/rbind again, and use cBind/rBind only

~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/zzz.R
~ /trunk/Matrix/tests/bind.R

Rev 4199 – + diff(.), + "dim<-"; cBind/rBind + cbind/rbind; indexing fixes ...

maechler — Sat, 24 Mar 2007 14:54:00 +0000

maechler – 24 file(s) modified
+ diff(.), + "dim<-"; cBind/rBind + cbind/rbind; indexing fixes - current state

~ /trunk/Matrix/.Rbuildignore
~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/diagonalMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/ndenseMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/R/zzz.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/TODO

Rev 4109 – drop(); tweaks to Ops & indexing; Rsparse coercions for less ...

maechler — Tue, 30 Jan 2007 17:41:02 +0000

maechler – 28 file(s) modified
drop(); tweaks to Ops & indexing; Rsparse coercions for less exceptions in tests/Class+Meth.R

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/man/nsparseMatrix-classes.Rd
~ /trunk/Matrix/man/RsparseMatrix-class.Rd
~ /trunk/Matrix/man/sparseQR-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/lsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/nsparseMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/Rsparse.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 4095 – nnzero(), length(), "Ops" & "Logic", many more setAs(); misc.fixes

maechler — Tue, 23 Jan 2007 17:17:15 +0000

maechler – 41 file(s) modified
nnzero(), length(), "Ops" & "Logic", many more setAs(); misc.fixes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CHMfactor-class.Rd
~ /trunk/Matrix/man/Cholesky.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dtRMatrix-class-def.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/ndenseMatrix-class.Rd
~ /trunk/Matrix/man/ngeMatrix-class.Rd
+ /trunk/Matrix/man/nnzero.Rd
~ /trunk/Matrix/man/nsparseMatrix-classes.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/lsTMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/ltTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/ndenseMatrix.R
~ /trunk/Matrix/R/ngTMatrix.R
~ /trunk/Matrix/R/nsCMatrix.R
~ /trunk/Matrix/R/ntCMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/pMatrix.R
+ /trunk/Matrix/R/triangularMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 4064 – move Ops to new Ops.R; start using "Logic"

maechler — Thu, 28 Dec 2006 22:11:32 +0000

maechler – 19 file(s) modified
move Ops to new Ops.R; start using "Logic"

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/ndenseMatrix-class.Rd
~ /trunk/Matrix/man/ngeMatrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/ndenseMatrix.R
+ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/TODO

Rev 4052 – rbind2() / cbind2() methods fixes + new Auxiliaries

maechler — Fri, 22 Dec 2006 19:53:37 +0000

maechler – 18 file(s) modified
rbind2() / cbind2() methods fixes + new Auxiliaries

~ /trunk/Matrix/ChangeLog
+ /trunk/Matrix/man/atomicVector-class.Rd
~ /trunk/Matrix/man/diagonalMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
+ /trunk/Matrix/R/bind2.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/tests/bind.R
~ /trunk/Matrix/tests/bind.Rout.save

Rev 4032 – any(), all() and "Compare"() - for release of 0.9975-7

maechler — Sat, 16 Dec 2006 12:37:25 +0000

maechler – 15 file(s) modified
any(), all() and "Compare"(<sparse>) - for release of 0.9975-7

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
+ /trunk/Matrix/man/all-methods.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lMatrix.R
~ /trunk/Matrix/R/lsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/simple.R

Rev 3931 – miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix

maechler — Fri, 27 Oct 2006 16:58:15 +0000

maechler – 38 file(s) modified
miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/ddiMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/diagonalMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/ldiMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/HBMM.R
~ /trunk/Matrix/R/Hilbert.R
~ /trunk/Matrix/R/lMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/tests/validObj.R
~ /trunk/Matrix/TODO

Rev 3912 – small changes related to "corMatrix" and other newly seen classes ...

maechler — Fri, 20 Oct 2006 21:08:28 +0000

maechler – 8 file(s) modified
small changes related to "corMatrix" and other newly seen classes in tests/Class+Meth.R

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
+ /trunk/Matrix/R/corMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/tests/Class+Meth.R

Rev 3875 – sub-assign to diagonal => sparse; + new bdiag() function

maechler — Fri, 06 Oct 2006 15:42:12 +0000

maechler – 3 file(s) modified
sub-assign to diagonal => sparse; + new bdiag() function

+ /trunk/Matrix/man/bdiag.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/diagMatrix.R

Rev 3755 – new nMatrix and subclasses; lsparse change to have x slot; ...

maechler — Mon, 11 Sep 2006 22:13:07 +0000

maechler – 64 file(s) modified
new nMatrix and subclasses; lsparse change to have x slot; many consequences

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/inst/doc/Intro2Matrix.Rnw
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CHMfactor-class.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/lsyMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
+ /trunk/Matrix/man/ndenseMatrix-class.Rd
+ /trunk/Matrix/man/ndiMatrix-class.Rd
+ /trunk/Matrix/man/ngeMatrix-class.Rd
+ /trunk/Matrix/man/nMatrix-class.Rd
+ /trunk/Matrix/man/nsparseMatrix-classes.Rd
+ /trunk/Matrix/man/nsyMatrix-class.Rd
+ /trunk/Matrix/man/ntrMatrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
+ /trunk/Matrix/R/lMatrix.R
~ /trunk/Matrix/R/lsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
+ /trunk/Matrix/R/ndenseMatrix.R
+ /trunk/Matrix/R/ngCMatrix.R
+ /trunk/Matrix/R/ngTMatrix.R
+ /trunk/Matrix/R/nsCMatrix.R
+ /trunk/Matrix/R/nsparseMatrix.R
+ /trunk/Matrix/R/ntCMatrix.R
+ /trunk/Matrix/R/ntTMatrix.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/chm_common.h
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsTMatrix.c
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/ldense.c
~ /trunk/Matrix/src/ldense.h
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/Tsparse.c
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R

Rev 3688 – re-add head() and tail() to exported methods

maechler — Tue, 05 Sep 2006 13:16:23 +0000

maechler – 3 file(s) modified
re-add head() and tail() to exported methods

~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R

Rev 3678 – Merging changes from Matrix-nolmer branch

bates — Mon, 04 Sep 2006 18:41:34 +0000

bates – 37 file(s) modified
Merging changes from Matrix-nolmer branch

~ /trunk/Matrix/ChangeLog
x /trunk/Matrix/data/sleepstudy.rda
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
x /trunk/Matrix/man/BIC.Rd
x /trunk/Matrix/man/fixef.Rd
x /trunk/Matrix/man/hatTrace.Rd
x /trunk/Matrix/man/lmer-class.Rd
x /trunk/Matrix/man/lmer.Rd
x /trunk/Matrix/man/mcmcsamp.Rd
x /trunk/Matrix/man/pedigree-class.Rd
x /trunk/Matrix/man/pedigree.Rd
x /trunk/Matrix/man/ranef.Rd
x /trunk/Matrix/man/sleepstudy.Rd
x /trunk/Matrix/man/VarCorr-class.Rd
x /trunk/Matrix/man/VarCorr.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/dtCMatrix.R
x /trunk/Matrix/R/lmer.R
x /trunk/Matrix/R/pedigree.R
~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/dtCMatrix.c
~ /trunk/Matrix/src/dtCMatrix.h
~ /trunk/Matrix/src/init.c
x /trunk/Matrix/src/lmer.c
x /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/src/ltCMatrix.c
~ /trunk/Matrix/src/ltCMatrix.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
x /trunk/Matrix/src/pedigree.c
x /trunk/Matrix/src/pedigree.h
~ /trunk/Matrix/src/SOURCES_C.mkf
~ /trunk/Matrix/src/Syms.h
x /trunk/Matrix/tests/lmer.R

Rev 3496 – a bit more "MatrixFactorization" ..

maechler — Fri, 25 Aug 2006 14:39:45 +0000

maechler – 5 file(s) modified
a bit more "MatrixFactorization" ..

~ /trunk/Matrix/man/CHMfactor-class.Rd
+ /trunk/Matrix/man/MatrixFactorization-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
+ /trunk/Matrix/R/MatrixFactorization.R

Rev 3495 – 1st stab at "MatrixFactorization" class; exporting CHMfactor etc

maechler — Fri, 25 Aug 2006 10:44:48 +0000

maechler – 7 file(s) modified
1st stab at "MatrixFactorization" class; exporting CHMfactor etc

~ /trunk/Matrix/man/CHMfactor-class.Rd
~ /trunk/Matrix/man/Cholesky.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dppMatrix.R

Rev 3475 – Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead

bates — Wed, 23 Aug 2006 21:25:32 +0000

bates – 4 file(s) modified
Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead

~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 3451 – rename class "LU" to "denseLU" and make "LU" virtual

maechler — Mon, 21 Aug 2006 15:24:47 +0000

maechler – 12 file(s) modified
rename class "LU" to "denseLU" and make "LU" virtual

~ /trunk/Matrix/man/LU-class.Rd
~ /trunk/Matrix/man/lu.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/LU.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/sparseQR.R
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/tests/other-pkgs.R
x /trunk/Matrix/tests/sparseQR.R

Rev 3438 – Added methods for sparseQR for qr.qy, qr.qty, qr.coef, qr.resid and ...

bates — Sun, 20 Aug 2006 03:17:19 +0000

bates – 6 file(s) modified
Added methods for sparseQR for qr.qy, qr.qty, qr.coef, qr.resid and qr.fitted

~ /trunk/Matrix/NAMESPACE
+ /trunk/Matrix/R/sparseQR.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/SOURCES_C.mkf
+ /trunk/Matrix/src/sparseQR.c
+ /trunk/Matrix/src/sparseQR.h

Rev 3427 – export zapsmall(); define as.numeric and as.logical methods (not yet finished); ...

maechler — Fri, 18 Aug 2006 13:53:33 +0000

maechler – 8 file(s) modified
export zapsmall(); define as.numeric and as.logical methods (not yet finished); fix printing "U" diagonal triangular sparse

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R

Rev 3420 – add sparse LU and QR decompositions

bates — Thu, 17 Aug 2006 13:57:53 +0000

bates – 11 file(s) modified
add sparse LU and QR decompositions

~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/lu.Rd
+ /trunk/Matrix/man/sparseLU-class.Rd
+ /trunk/Matrix/man/sparseQR-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3415 – Adding dgCMatrix_{lusol,qrsol,QR} but QR still not working

bates — Tue, 15 Aug 2006 22:31:30 +0000

bates – 7 file(s) modified
Adding dgCMatrix_{lusol,qrsol,QR} but QR still not working

~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/src/cs_utils.h
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3354 – Add hatTrace function

bates — Mon, 31 Jul 2006 23:05:04 +0000

bates – 3 file(s) modified
Add hatTrace function

~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/lmer.c

Rev 3350 – change unused class "correlation" to "corMatrix"

maechler — Mon, 31 Jul 2006 12:11:35 +0000

maechler – 6 file(s) modified
change unused class "correlation" to "corMatrix"

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/lmer.R

Rev 3340 – many method cleanups; notably some "dgC" -> "Csparse" generaliztations

maechler — Sat, 22 Jul 2006 17:59:53 +0000

maechler – 41 file(s) modified
many method cleanups; notably some "dgC" -> "Csparse" generaliztations

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
+ /trunk/Matrix/man/replValue-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/pedigree.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/tests/bind.R
~ /trunk/Matrix/tests/bind.Rout.save
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 3337 – export isSymmetric()

maechler — Fri, 21 Jul 2006 06:46:36 +0000

maechler – 2 file(s) modified
export isSymmetric()

+ /trunk/Matrix/man/isSymmetric-methods.Rd
~ /trunk/Matrix/NAMESPACE

Rev 3288 – Establish new class glmer; modify validity check on pedigree to ...

bates — Thu, 06 Jul 2006 15:14:12 +0000

bates – 3 file(s) modified
Establish new class glmer; modify validity check on pedigree to account for nonparallel patterns of missingness in parents

~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R

Rev 3172 – useDynlib(*, .registration=TRUE)

maechler — Tue, 23 May 2006 08:01:44 +0000

maechler – 33 file(s) modified
useDynlib(*, .registration=TRUE)

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgRMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/eigen.R
~ /trunk/Matrix/R/lCholCMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/ltTMatrix.R
~ /trunk/Matrix/R/LU.R
~ /trunk/Matrix/R/pedigree.R
~ /trunk/Matrix/R/Tsparse.R

Rev 3145 – lowerTriMatrix to tril, upperTriMatrix to triu, added band extractor

bates — Wed, 17 May 2006 17:42:09 +0000

bates – 6 file(s) modified
lowerTriMatrix to tril, upperTriMatrix to triu, added band extractor

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/INDEX
+ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Csparse.R

Rev 3085 – make pedigree class more memory-efficient; add pedigree()

maechler — Fri, 21 Apr 2006 15:44:39 +0000

maechler – 5 file(s) modified
make pedigree class more memory-efficient; add pedigree()

+ /trunk/Matrix/man/pedigree-class.Rd
+ /trunk/Matrix/man/pedigree.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/pedigree.R

Rev 3080 – Remove postVar generic and methods

bates — Wed, 19 Apr 2006 14:16:59 +0000

bates – 3 file(s) modified
Remove postVar generic and methods

~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/lmer.R

Rev 3063 – pedigree class added

bates — Thu, 13 Apr 2006 11:12:51 +0000

bates – 3 file(s) modified
pedigree class added

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R

Rev 3054 – Added qqmath method for ranef.lmer and postVar for ranef methods

bates — Sun, 09 Apr 2006 00:02:26 +0000

bates – 9 file(s) modified
Added qqmath method for ranef.lmer and postVar for ranef methods

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/TODO