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4549 6962 d 0 h maechler /branches/Matrix-APIchange/ port changes (4545..4548) from trunk  
/branches/Matrix-APIchange/man/printSpMatrix.Rd
/branches/Matrix-APIchange/ChangeLog
/branches/Matrix-APIchange/Done
/branches/Matrix-APIchange/NAMESPACE
/branches/Matrix-APIchange/R/Rsparse.R
/branches/Matrix-APIchange/R/Tsparse.R
/branches/Matrix-APIchange/R/ddenseMatrix.R
/branches/Matrix-APIchange/R/dsTMatrix.R
/branches/Matrix-APIchange/R/dtTMatrix.R
/branches/Matrix-APIchange/R/lgCMatrix.R
/branches/Matrix-APIchange/R/ngCMatrix.R
/branches/Matrix-APIchange/R/pMatrix.R
/branches/Matrix-APIchange/R/sparseMatrix.R
/branches/Matrix-APIchange/man/sparseMatrix-class.Rd
/branches/Matrix-APIchange/src/cs_utils.c
/branches/Matrix-APIchange/src/lgCMatrix.c
/branches/Matrix-APIchange/tests/Class+Meth.R
4529 6965 d 23 h bates /branches/Matrix-APIchange/ Creating a branch for the API changes from the 0.99875 series to the 0.999375 series  
/branches/Matrix-APIchange
4527 6967 d 3 h maechler /trunk/Matrix/ add session- and hardware-info to Comparisons  
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/inst/doc/Comparisons.Rnw
4501 6973 d 18 h maechler /trunk/Matrix/ xsparseVector etc (smarter coercions)  
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/colSums.R
/trunk/Matrix/R/sparseVector.R
/trunk/Matrix/TODO
/trunk/Matrix/inst/doc/Intro2Matrix.Rnw
/trunk/Matrix/man/colSums.Rd
/trunk/Matrix/man/sparseVector-class.Rd
4468 6980 d 18 h maechler /trunk/Matrix/ + print(<sparse>, extra args)  
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/sparseMatrix-class.Rd
4386 7004 d 15 h maechler /trunk/Matrix/ export drop0() {name is open for discussion}; document colSums  
/trunk/Matrix/man/colSums.Rd
/trunk/Matrix/man/drop0.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/not.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/kronecker-methods.Rd
/trunk/Matrix/man/spMatrix.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
4371 7006 d 20 h maechler /trunk/Matrix/ sparseVector. <- v; rowSums/colSums; summary(<sparse>); spMatrix(.) utility  
/trunk/Matrix/man/spMatrix.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/Rsparse.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/R/sparseVector.R
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/man/sparseVector-class.Rd
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/simple.R
4355 7011 d 13 h maechler /trunk/Matrix/ forgotten in last commit  
/trunk/Matrix/NAMESPACE
4207 7061 d 20 h maechler /trunk/Matrix/ omit cbind/rbind again, and use cBind/rBind only  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/zzz.R
/trunk/Matrix/tests/bind.R
4199 7064 d 21 h maechler /trunk/Matrix/ + diff(.), + "dim<-"; cBind/rBind + cbind/rbind; indexing fixes - current state  
/trunk/Matrix/.Rbuildignore
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/ndenseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/R/zzz.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/Xtrct-methods.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
4109 7117 d 19 h maechler /trunk/Matrix/ drop(); tweaks to Ops & indexing; Rsparse coercions for less exceptions in tests/Class+Meth.R  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/Rsparse.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/lsparseMatrix.R
/trunk/Matrix/R/nsparseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Matrix.Rd
/trunk/Matrix/man/RsparseMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/nsparseMatrix-classes.Rd
/trunk/Matrix/man/sparseQR-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/cs_utils.c
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/simple.R
4095 7124 d 19 h maechler /trunk/Matrix/ nnzero(), length(), "Ops" & "Logic", many more setAs(); misc.fixes  
/trunk/Matrix/R/triangularMatrix.R
/trunk/Matrix/man/nnzero.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/lsTMatrix.R
/trunk/Matrix/R/ltCMatrix.R
/trunk/Matrix/R/ltTMatrix.R
/trunk/Matrix/R/ndenseMatrix.R
/trunk/Matrix/R/ngTMatrix.R
/trunk/Matrix/R/nsCMatrix.R
/trunk/Matrix/R/ntCMatrix.R
/trunk/Matrix/R/pMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/CHMfactor-class.Rd
/trunk/Matrix/man/Cholesky.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dtRMatrix-class-def.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/ndenseMatrix-class.Rd
/trunk/Matrix/man/ngeMatrix-class.Rd
/trunk/Matrix/man/nsparseMatrix-classes.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/tests/simple.R
4064 7150 d 14 h maechler /trunk/Matrix/ move Ops to new Ops.R; start using "Logic"  
/trunk/Matrix/R/Ops.R
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/ndenseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/ndenseMatrix-class.Rd
/trunk/Matrix/man/ngeMatrix-class.Rd
/trunk/Matrix/man/pMatrix-class.Rd
4052 7156 d 16 h maechler /trunk/Matrix/ rbind2() / cbind2() methods fixes + new Auxiliaries  
/trunk/Matrix/R/bind2.R
/trunk/Matrix/man/atomicVector-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/tests/bind.R
/trunk/Matrix/tests/bind.Rout.save
4032 7163 d 0 h maechler /trunk/Matrix/ any(), all() and "Compare"(<sparse>) - for release of 0.9975-7  
/trunk/Matrix/man/all-methods.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/lMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lsparseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/simple.R
3931 7212 d 19 h maechler /trunk/Matrix/ miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/HBMM.R
/trunk/Matrix/R/Hilbert.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/lMatrix.R
/trunk/Matrix/R/pMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/ddiMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/ldiMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
/trunk/Matrix/tests/validObj.R
3912 7219 d 15 h maechler /trunk/Matrix/ small changes related to "corMatrix" and other newly seen classes in tests/Class+Meth.R  
/trunk/Matrix/R/corMatrix.R
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/man/dpoMatrix-class.Rd
/trunk/Matrix/tests/Class+Meth.R
3875 7233 d 21 h maechler /trunk/Matrix/ sub-assign to diagonal => sparse; + new bdiag() function  
/trunk/Matrix/man/bdiag.Rd
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/diagMatrix.R
3755 7258 d 14 h maechler /trunk/Matrix/ new nMatrix and subclasses; lsparse change to have x slot; many consequences  
/trunk/Matrix/R/lMatrix.R
/trunk/Matrix/R/ndenseMatrix.R
/trunk/Matrix/R/ngCMatrix.R
/trunk/Matrix/R/ngTMatrix.R
/trunk/Matrix/R/nsCMatrix.R
/trunk/Matrix/R/nsparseMatrix.R
/trunk/Matrix/R/ntCMatrix.R
/trunk/Matrix/R/ntTMatrix.R
/trunk/Matrix/man/nMatrix-class.Rd
/trunk/Matrix/man/ndenseMatrix-class.Rd
/trunk/Matrix/man/ndiMatrix-class.Rd
/trunk/Matrix/man/ngeMatrix-class.Rd
/trunk/Matrix/man/nsparseMatrix-classes.Rd
/trunk/Matrix/man/nsyMatrix-class.Rd
/trunk/Matrix/man/ntrMatrix-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgCMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lsparseMatrix.R
/trunk/Matrix/R/pMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/inst/doc/Intro2Matrix.Rnw
/trunk/Matrix/inst/test-tools.R
/trunk/Matrix/man/CHMfactor-class.Rd
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/lsyMatrix-class.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/Tsparse.c
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/chm_common.h
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/dtTMatrix.c
/trunk/Matrix/src/init.c
/trunk/Matrix/src/ldense.c
/trunk/Matrix/src/ldense.h
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
3688 7264 d 23 h maechler /trunk/Matrix/ re-add head() and tail() to exported methods  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/sparseMatrix.R
3678 7265 d 18 h bates /trunk/Matrix/ Merging changes from Matrix-nolmer branch  
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/pedigree.R
/trunk/Matrix/data/sleepstudy.rda
/trunk/Matrix/man/BIC.Rd
/trunk/Matrix/man/VarCorr-class.Rd
/trunk/Matrix/man/VarCorr.Rd
/trunk/Matrix/man/fixef.Rd
/trunk/Matrix/man/hatTrace.Rd
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/man/mcmcsamp.Rd
/trunk/Matrix/man/pedigree-class.Rd
/trunk/Matrix/man/pedigree.Rd
/trunk/Matrix/man/ranef.Rd
/trunk/Matrix/man/sleepstudy.Rd
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
/trunk/Matrix/src/pedigree.c
/trunk/Matrix/src/pedigree.h
/trunk/Matrix/tests/lmer.R
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/INDEX
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/Syms.h
/trunk/Matrix/src/dtCMatrix.c
/trunk/Matrix/src/dtCMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/ltCMatrix.c
/trunk/Matrix/src/ltCMatrix.h
3496 7275 d 22 h maechler /trunk/Matrix/ a bit more "MatrixFactorization" ..  
/trunk/Matrix/R/MatrixFactorization.R
/trunk/Matrix/man/MatrixFactorization-class.Rd
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/man/CHMfactor-class.Rd
3495 7276 d 2 h maechler /trunk/Matrix/ 1st stab at "MatrixFactorization" class; exporting CHMfactor etc  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/dppMatrix.R
/trunk/Matrix/man/CHMfactor-class.Rd
/trunk/Matrix/man/Cholesky.Rd
/trunk/Matrix/man/dpoMatrix-class.Rd
3475 7277 d 15 h bates /trunk/Matrix/ Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/init.c
3451 7279 d 21 h maechler /trunk/Matrix/ rename class "LU" to "denseLU" and make "LU" virtual  
/trunk/Matrix/tests/sparseQR.R
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/LU.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/pMatrix.R
/trunk/Matrix/R/sparseQR.R
/trunk/Matrix/man/LU-class.Rd
/trunk/Matrix/man/lu.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/tests/other-pkgs.R
3438 7281 d 9 h bates /trunk/Matrix/ Added methods for sparseQR for qr.qy, qr.qty, qr.coef, qr.resid and qr.fitted  
/trunk/Matrix/R/sparseQR.R
/trunk/Matrix/src/sparseQR.c
/trunk/Matrix/src/sparseQR.h
/trunk/Matrix/NAMESPACE
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/init.c
3427 7282 d 22 h maechler /trunk/Matrix/ export zapsmall(); define as.numeric and as.logical methods (not yet finished); fix printing "U" diagonal triangular sparse  
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/dMatrix-class.Rd
3420 7283 d 22 h bates /trunk/Matrix/ add sparse LU and QR decompositions  
/trunk/Matrix/man/sparseLU-class.Rd
/trunk/Matrix/man/sparseQR-class.Rd
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/lu.Rd
/trunk/Matrix/src/cs_utils.c
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/init.c
3415 7285 d 14 h bates /trunk/Matrix/ Adding dgCMatrix_{lusol,qrsol,QR} but QR still not working  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/src/cs_utils.c
/trunk/Matrix/src/cs_utils.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/init.c
3354 7300 d 13 h bates /trunk/Matrix/ Add hatTrace function  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/lmer.R
/trunk/Matrix/src/lmer.c
3350 7301 d 0 h maechler /trunk/Matrix/ change unused class "correlation" to "corMatrix"  
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/man/dpoMatrix-class.Rd
3340 7309 d 18 h maechler /trunk/Matrix/ many method cleanups; notably some "dgC" -> "Csparse" generaliztations  
/trunk/Matrix/man/replValue-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/pedigree.R
/trunk/Matrix/TODO
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/tests/bind.R
/trunk/Matrix/tests/bind.Rout.save
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
3337 7311 d 6 h maechler /trunk/Matrix/ export isSymmetric()  
/trunk/Matrix/man/isSymmetric-methods.Rd
/trunk/Matrix/NAMESPACE
3288 7325 d 21 h bates /trunk/Matrix/ Establish new class glmer; modify validity check on pedigree to account for nonparallel patterns of missingness in parents  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/lmer.R
3172 7370 d 4 h maechler /trunk/Matrix/ useDynlib(*, .registration=TRUE)  
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/LU.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgRMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/dppMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dspMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/dtTMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/R/eigen.R
/trunk/Matrix/R/lCholCMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgCMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/ltCMatrix.R
/trunk/Matrix/R/ltTMatrix.R
/trunk/Matrix/R/pedigree.R
3145 7375 d 19 h bates /trunk/Matrix/ lowerTriMatrix to tril, upperTriMatrix to triu, added band extractor  
/trunk/Matrix/man/band.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/INDEX
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Csparse.R
3085 7401 d 21 h maechler /trunk/Matrix/ make pedigree class more memory-efficient; add pedigree()  
/trunk/Matrix/man/pedigree-class.Rd
/trunk/Matrix/man/pedigree.Rd
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/pedigree.R
3080 7403 d 22 h bates /trunk/Matrix/ Remove postVar generic and methods  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/lmer.R
3063 7410 d 1 h bates /trunk/Matrix/ pedigree class added  
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
3054 7414 d 12 h bates /trunk/Matrix/ Added qqmath method for ranef.lmer and postVar for ranef methods  
/trunk/Matrix/ChangeLog
/trunk/Matrix/INDEX
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/TODO
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h