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4549 6962 d 2 h maechler /branches/Matrix-APIchange/ port changes (4545..4548) from trunk  
/branches/Matrix-APIchange/man/printSpMatrix.Rd
/branches/Matrix-APIchange/ChangeLog
/branches/Matrix-APIchange/Done
/branches/Matrix-APIchange/NAMESPACE
/branches/Matrix-APIchange/R/Rsparse.R
/branches/Matrix-APIchange/R/Tsparse.R
/branches/Matrix-APIchange/R/ddenseMatrix.R
/branches/Matrix-APIchange/R/dsTMatrix.R
/branches/Matrix-APIchange/R/dtTMatrix.R
/branches/Matrix-APIchange/R/lgCMatrix.R
/branches/Matrix-APIchange/R/ngCMatrix.R
/branches/Matrix-APIchange/R/pMatrix.R
/branches/Matrix-APIchange/R/sparseMatrix.R
/branches/Matrix-APIchange/man/sparseMatrix-class.Rd
/branches/Matrix-APIchange/src/cs_utils.c
/branches/Matrix-APIchange/src/lgCMatrix.c
/branches/Matrix-APIchange/tests/Class+Meth.R
4529 6966 d 1 h bates /branches/Matrix-APIchange/ Creating a branch for the API changes from the 0.99875 series to the 0.999375 series  
/branches/Matrix-APIchange
4501 6973 d 20 h maechler /trunk/Matrix/ xsparseVector etc (smarter coercions)  
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/colSums.R
/trunk/Matrix/R/sparseVector.R
/trunk/Matrix/TODO
/trunk/Matrix/inst/doc/Intro2Matrix.Rnw
/trunk/Matrix/man/colSums.Rd
/trunk/Matrix/man/sparseVector-class.Rd
4468 6980 d 20 h maechler /trunk/Matrix/ + print(<sparse>, extra args)  
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/sparseMatrix-class.Rd
4422 6991 d 22 h maechler /trunk/Matrix/ give message on suppressed column names  
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
4109 7117 d 20 h maechler /trunk/Matrix/ drop(); tweaks to Ops & indexing; Rsparse coercions for less exceptions in tests/Class+Meth.R  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/Rsparse.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/lsparseMatrix.R
/trunk/Matrix/R/nsparseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Matrix.Rd
/trunk/Matrix/man/RsparseMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/nsparseMatrix-classes.Rd
/trunk/Matrix/man/sparseQR-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/cs_utils.c
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/simple.R
3959 7202 d 17 h maechler /trunk/Matrix/ host of changes; mostly indexing(sub-set & -assign) for symmetric and [ cbind(i,j) ]  
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/pMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/R/zzz.R
/trunk/Matrix/TODO
/trunk/Matrix/inst/test-tools.R
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/Xtrct-methods.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/validObj.R
3942 7207 d 20 h maechler /trunk/Matrix/ extend Csparse_Csparse_crossprod for tcrossprod (need test!); isSymmetric improved; misc.  
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/init.c
3933 7209 d 21 h maechler /trunk/Matrix/ another set of fixes/improvements; the last prompted by Harri Kiiveri  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/Done
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgRMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/RsparseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgRMatrix-class.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
3931 7212 d 21 h maechler /trunk/Matrix/ miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/HBMM.R
/trunk/Matrix/R/Hilbert.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/lMatrix.R
/trunk/Matrix/R/pMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/ddiMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/ldiMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
/trunk/Matrix/tests/validObj.R
3871 7234 d 22 h maechler /trunk/Matrix/ M[i,j] <- <Matrix>  
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/man/Diagonal.Rd
/trunk/Matrix/man/Subassign-methods.Rd
3828 7241 d 23 h maechler /trunk/Matrix/ "Compare" for "dMatrix"; plus a few small ones  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/Done
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dtTMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/dtpMatrix-class.Rd
3795 7251 d 17 h bates /trunk/Matrix/ Update. Move lmer-related TODOs to lme4  
/trunk/Matrix/Done
/trunk/Matrix/TODO
3340 7309 d 20 h maechler /trunk/Matrix/ many method cleanups; notably some "dgC" -> "Csparse" generaliztations  
/trunk/Matrix/man/replValue-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/pedigree.R
/trunk/Matrix/TODO
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/tests/bind.R
/trunk/Matrix/tests/bind.Rout.save
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
3338 7311 d 7 h maechler /trunk/Matrix/ miscellaneous mostly related to sparse indexing  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/Done
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgRMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/dgRMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
3218 7354 d 5 h maechler /trunk/Matrix/ implemented all 4 of {rowSums(), ... colMeans()}  
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/tests/base-matrix-fun.R
2362 7438 d 20 h maechler /trunk/Matrix/ put "mm" and "y" datasets into list "KNex" and change the docu, examples, tests, and one vignette accordingly;
ready for release of 0.995-6		  
/trunk/Matrix/data/KNex.rda
/trunk/Matrix/man/KNex.Rd
/trunk/Matrix/tests/dpoMatrix.Rout.save
/trunk/Matrix/data/mm.rda
/trunk/Matrix/data/y.rda
/trunk/Matrix/man/mm.Rd
/trunk/Matrix/man/y.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/Done
/trunk/Matrix/TODO
/trunk/Matrix/inst/doc/Comparisons.Rnw
/trunk/Matrix/man/dCholCMatrix-class.Rd
/trunk/Matrix/man/externalFormats.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/tests/base-matrix-fun.R
/trunk/Matrix/tests/dg_Matrix.R
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/mm-redo.R
/trunk/Matrix/tests/simple.R
2357 7441 d 0 h maechler /trunk/Matrix/ sparse: "[<-" and better arithmetic; other tweaks  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/Done
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Matrix.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lsyMatrix-class.Rd
/trunk/Matrix/man/ltrMatrix-class.Rd
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/group-methods.R
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
2355 7441 d 1 h bates /trunk/Matrix/ Update documentation to new lmer class structure  
/trunk/Matrix/Done
/trunk/Matrix/INDEX
/trunk/Matrix/TODO
/trunk/Matrix/man/lmer-class.Rd
2123 7509 d 21 h maechler /trunk/Matrix/ "diagonalMatrix" class and subclasses with a few methods; very basic "ltTMatrix" methods  
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/ltTMatrix.R
/trunk/Matrix/man/Diagonal.Rd
/trunk/Matrix/man/ddiMatrix-class.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/ldiMatrix-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/lsparseMatrix-classes.Rd

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