R-packages – /branches/Matrix-APIchange/ChangeLog

Rev 4549 – port changes (4545..4548) from trunk

maechler — Thu, 05 Jul 2007 12:22:06 +0000

maechler – 17 file(s) modified
port changes (4545..4548) from trunk

~ /branches/Matrix-APIchange/ChangeLog
~ /branches/Matrix-APIchange/Done
+ /branches/Matrix-APIchange/man/printSpMatrix.Rd (copied from /trunk/Matrix/man/printSpMatrix.Rd@4548)
~ /branches/Matrix-APIchange/man/sparseMatrix-class.Rd
~ /branches/Matrix-APIchange/NAMESPACE
~ /branches/Matrix-APIchange/R/ddenseMatrix.R
~ /branches/Matrix-APIchange/R/dsTMatrix.R
~ /branches/Matrix-APIchange/R/dtTMatrix.R
~ /branches/Matrix-APIchange/R/lgCMatrix.R
~ /branches/Matrix-APIchange/R/ngCMatrix.R
~ /branches/Matrix-APIchange/R/pMatrix.R
~ /branches/Matrix-APIchange/R/Rsparse.R
~ /branches/Matrix-APIchange/R/sparseMatrix.R
~ /branches/Matrix-APIchange/R/Tsparse.R
~ /branches/Matrix-APIchange/src/cs_utils.c
~ /branches/Matrix-APIchange/src/lgCMatrix.c
~ /branches/Matrix-APIchange/tests/Class+Meth.R

Rev 4544 –

bates — Wed, 04 Jul 2007 16:27:48 +0000

bates – 1 file(s) modified

~ /branches/Matrix-APIchange/ChangeLog

Rev 4529 – Creating a branch for the API changes from the 0.99875 ...

bates — Sun, 01 Jul 2007 13:27:16 +0000

bates – 1 file(s) modified
Creating a branch for the API changes from the 0.99875 series to the 0.999375 series

+ /branches/Matrix-APIchange (copied from /trunk/Matrix@4528)

Rev 4518 – Math/Math2: setGeneric adaption for todays` R-devel

maechler — Fri, 29 Jun 2007 16:43:47 +0000

maechler – 6 file(s) modified
Math/Math2: setGeneric adaption for todays` R-devel

~ /trunk/Matrix/.Rbuildignore
~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/spMatrix.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/sparseMatrix.R

Rev 4501 – xsparseVector etc (smarter coercions)

maechler — Sat, 23 Jun 2007 18:08:48 +0000

maechler – 11 file(s) modified
xsparseVector etc (smarter coercions)

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/inst/doc/Intro2Matrix.Rnw
~ /trunk/Matrix/man/colSums.Rd
~ /trunk/Matrix/man/sparseVector-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/colSums.R
~ /trunk/Matrix/R/sparseVector.R
~ /trunk/Matrix/TODO

Rev 4483 – colSums, ... rowMeans for all Matrices; notably sparse ones via ...

maechler — Tue, 19 Jun 2007 16:16:58 +0000

maechler – 25 file(s) modified
colSums, ... rowMeans for all Matrices; notably sparse ones via [diln]gCMatrix_colSums C code

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/man/colSums.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/RsparseMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
+ /trunk/Matrix/R/colSums.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/Rsparse.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/sparseVector.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 4474 –

bates — Mon, 18 Jun 2007 16:15:49 +0000

bates – 1 file(s) modified

~ /trunk/Matrix/ChangeLog

Rev 4469 – kronecker buglet fix

maechler — Sat, 16 Jun 2007 18:34:05 +0000

maechler – 3 file(s) modified
kronecker buglet fix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/kronecker.R
~ /trunk/Matrix/tests/simple.R

Rev 4468 – + print(, extra args)

maechler — Sat, 16 Jun 2007 18:31:51 +0000

maechler – 5 file(s) modified
+ print(<sparse>, extra args)

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/sparseMatrix.R

Rev 4467 –

bates — Sat, 16 Jun 2007 15:54:54 +0000

bates – 1 file(s) modified

~ /trunk/Matrix/ChangeLog

Rev 4464 –

bates — Fri, 15 Jun 2007 23:17:45 +0000

bates – 1 file(s) modified

~ /trunk/Matrix/ChangeLog

Rev 4462 –

bates — Fri, 15 Jun 2007 18:22:25 +0000

bates – 1 file(s) modified

~ /trunk/Matrix/ChangeLog

Rev 4456 – more strict validity checking for Csparse

maechler — Thu, 14 Jun 2007 10:46:10 +0000

maechler – 5 file(s) modified
more strict validity checking for Csparse

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/tests/simple.R

Rev 4443 – another callGeneric fix

maechler — Thu, 07 Jun 2007 09:03:40 +0000

maechler – 2 file(s) modified
another callGeneric fix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/Auxiliaries.R

Rev 4440 – use correct "na.rm" default in all() and any(); tests for ...

maechler — Wed, 06 Jun 2007 14:24:58 +0000

maechler – 8 file(s) modified
use correct "na.rm" default in all() and any(); tests for that

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/all-methods.Rd
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lsparseMatrix.R
~ /trunk/Matrix/R/sparseVector.R
~ /trunk/Matrix/tests/bind.Rout.save
~ /trunk/Matrix/tests/simple.R

Rev 4430 –

bates — Tue, 05 Jun 2007 17:08:18 +0000

bates – 1 file(s) modified

~ /trunk/Matrix/ChangeLog

Rev 4429 –

bates — Tue, 05 Jun 2007 17:06:34 +0000

bates – 1 file(s) modified

~ /trunk/Matrix/ChangeLog

Rev 4422 – give message on suppressed column names

maechler — Tue, 05 Jun 2007 16:28:55 +0000

maechler – 5 file(s) modified
give message on suppressed column names

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/TODO

Rev 4419 –

bates — Mon, 04 Jun 2007 17:15:09 +0000

bates – 1 file(s) modified

~ /trunk/Matrix/ChangeLog

Rev 4413 –

bates — Sun, 03 Jun 2007 14:57:55 +0000

bates – 1 file(s) modified

~ /trunk/Matrix/ChangeLog

Rev 4386 – export drop0() {name is open for discussion}; document colSums

maechler — Wed, 23 May 2007 21:33:34 +0000

maechler – 13 file(s) modified
export drop0() {name is open for discussion}; document colSums

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
+ /trunk/Matrix/man/colSums.Rd
+ /trunk/Matrix/man/drop0.Rd
~ /trunk/Matrix/man/kronecker-methods.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/spMatrix.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/not.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/TODO

Rev 4371 – sparseVector. <- v; rowSums/colSums; summary(); spMatrix(.) utility

maechler — Mon, 21 May 2007 16:42:35 +0000

maechler – 16 file(s) modified
sparseVector. <- v; rowSums/colSums; summary(<sparse>); spMatrix(.) utility

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/sparseVector-class.Rd
+ /trunk/Matrix/man/spMatrix.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/Rsparse.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/sparseVector.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/simple.R

Rev 4364 – Write 1-based, not 0-based, indices in writeMM

bates — Sat, 19 May 2007 19:23:28 +0000

bates – 2 file(s) modified
Write 1-based, not 0-based, indices in writeMM

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/src/HBMM.c

Rev 4354 – part of sparseVector additions; in order to avoid merge conflicts

maechler — Wed, 16 May 2007 21:24:41 +0000

maechler – 21 file(s) modified
part of sparseVector additions; in order to avoid merge conflicts

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/diagonalMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
+ /trunk/Matrix/man/sparseVector-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/sparseMatrix.R
+ /trunk/Matrix/R/sparseVector.R
~ /trunk/Matrix/TODO

Rev 4353 – Added solve methods for CHMfactor class

bates — Wed, 16 May 2007 20:40:34 +0000

bates – 8 file(s) modified
Added solve methods for CHMfactor class

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/CHMfactor-class.Rd
~ /trunk/Matrix/man/Cholesky.Rd
~ /trunk/Matrix/R/CHMfactor.R
~ /trunk/Matrix/src/CHMfactor.c
~ /trunk/Matrix/src/CHMfactor.h
~ /trunk/Matrix/src/init.c

Rev 4339 – new version for CRAN - windows problem

maechler — Mon, 14 May 2007 13:17:37 +0000

maechler – 2 file(s) modified
new version for CRAN - windows problem

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION

Rev 4335 – fixed symmetric Tsparse indexing

maechler — Fri, 11 May 2007 10:07:17 +0000

maechler – 5 file(s) modified
fixed symmetric Tsparse indexing

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/indexing.R

Rev 4333 – fix duplicated subassigment: A[c(1,2,1),3] <- ..

maechler — Tue, 08 May 2007 12:25:57 +0000

maechler – 6 file(s) modified
fix duplicated subassigment: A[c(1,2,1),3] <- ..

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/TODO

Rev 4311 – update; mostly for ("[", Tsparse..)"

maechler — Thu, 26 Apr 2007 06:35:20 +0000

maechler – 9 file(s) modified
update; mostly for ("[", Tsparse..)"

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/RsparseMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/Rsparse.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save

Rev 4305 – Remove superfluous Lapack files

bates — Wed, 25 Apr 2007 22:22:41 +0000

bates – 6 file(s) modified
Remove superfluous Lapack files

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/src/Makefile
x /trunk/Matrix/src/zlacgv.f
x /trunk/Matrix/src/zpotf2.f
x /trunk/Matrix/src/zpotrf.f

Rev 4286 – kronecker() rationalization; more setAs(), notably to virtual classes and tT ...

maechler — Thu, 12 Apr 2007 13:21:51 +0000

maechler – 31 file(s) modified
kronecker() rationalization; more setAs(), notably to virtual classes and tT <-> gT

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/cBind.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/diagonalMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
+ /trunk/Matrix/man/kronecker-methods.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/nsparseMatrix-classes.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/kronecker.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/ltTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/ngTMatrix.R
~ /trunk/Matrix/R/ntTMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/bind.Rout.save
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R

Rev 4206 – move kronecker() methods to one place; goal (not yet!): become ...

maechler — Tue, 27 Mar 2007 16:43:22 +0000

maechler – 2 file(s) modified
move kronecker() methods to one place; goal (not yet!): become much faster

~ /trunk/Matrix/ChangeLog
+ /trunk/Matrix/R/kronecker.R

Rev 4199 – + diff(.), + "dim<-"; cBind/rBind + cbind/rbind; indexing fixes ...

maechler — Sat, 24 Mar 2007 14:54:00 +0000

maechler – 24 file(s) modified
+ diff(.), + "dim<-"; cBind/rBind + cbind/rbind; indexing fixes - current state

~ /trunk/Matrix/.Rbuildignore
~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/diagonalMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/ndenseMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/R/zzz.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/TODO

Rev 4154 – Prepare for 0.9975-11 release

bates — Fri, 16 Feb 2007 20:02:19 +0000

bates – 4 file(s) modified
Prepare for 0.9975-11 release

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/src/dgCMatrix.c

Rev 4153 – Add image method for CHMfactor class

bates — Fri, 16 Feb 2007 17:37:56 +0000

bates – 5 file(s) modified
Add image method for CHMfactor class

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/CHMfactor-class.Rd
~ /trunk/Matrix/R/CHMfactor.R

Rev 4133 – update

maechler — Mon, 05 Feb 2007 17:49:54 +0000

maechler – 2 file(s) modified
update

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION

Rev 4132 – eliminate infinite loop in coercions to [ln]sparseMatrix

maechler — Mon, 05 Feb 2007 16:53:17 +0000

maechler – 11 file(s) modified
eliminate infinite loop in coercions to [ln]sparseMatrix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/man/nsparseMatrix-classes.Rd
~ /trunk/Matrix/R/lsparseMatrix.R
~ /trunk/Matrix/R/ngCMatrix.R
~ /trunk/Matrix/R/nsCMatrix.R
~ /trunk/Matrix/R/nsparseMatrix.R
~ /trunk/Matrix/R/ntCMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/simple.R

Rev 4130 – more Matrix <-> SparseM

maechler — Mon, 05 Feb 2007 16:32:04 +0000

maechler – 4 file(s) modified
more Matrix <-> SparseM

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/SparseM-conv.Rd
~ /trunk/Matrix/R/SparseM-conv.R
~ /trunk/Matrix/tests/other-pkgs.R

Rev 4125 – Rsparse coercions now all via R-level "workaround"; to and from ...

maechler — Sat, 03 Feb 2007 21:13:22 +0000

maechler – 7 file(s) modified
Rsparse coercions now all via R-level "workaround"; to and from *virtual* rather than specific classes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/RsparseMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Rsparse.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/tests/Class+Meth.R

Rev 4123 – workaround platform-dependent segfault in R_to_CMatrix

maechler — Sat, 03 Feb 2007 16:34:51 +0000

maechler – 6 file(s) modified
workaround platform-dependent segfault in R_to_CMatrix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/R/Rsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/Class+Meth.R