R-packages – /branches/Matrix-APIchange/

Rev 4561 – * empty log message *

bates — Fri, 06 Jul 2007 14:52:19 +0000

bates – 1 file(s) modified
*** empty log message ***

~ /branches/Matrix-APIchange/ChangeLog

Rev 4560 – Replace most calls to Calloc by Alloca

bates — Fri, 06 Jul 2007 14:45:31 +0000

bates – 9 file(s) modified
Replace most calls to Calloc by Alloca

~ /branches/Matrix-APIchange/src/dgeMatrix.c
~ /branches/Matrix-APIchange/src/dgTMatrix.c
~ /branches/Matrix-APIchange/src/dspMatrix.c
~ /branches/Matrix-APIchange/src/dsyMatrix.c
~ /branches/Matrix-APIchange/src/dtCMatrix.c
~ /branches/Matrix-APIchange/src/factorizations.c
~ /branches/Matrix-APIchange/src/HBMM.c
~ /branches/Matrix-APIchange/src/Mutils.c
~ /branches/Matrix-APIchange/src/sparseQR.c

Rev 4559 – Remove Harwell-Boeing input/output functions - no longer used

bates — Fri, 06 Jul 2007 14:11:26 +0000

bates – 2 file(s) modified
Remove Harwell-Boeing input/output functions - no longer used

x /branches/Matrix-APIchange/src/iohb.c
x /branches/Matrix-APIchange/src/iohb.h

Rev 4558 – more R_CheckStack()s

maechler — Fri, 06 Jul 2007 13:14:36 +0000

maechler – 12 file(s) modified
more R_CheckStack()s

~ /branches/Matrix-APIchange/inst/doc/Comparisons.Rnw
~ /branches/Matrix-APIchange/src/CHMfactor.c
~ /branches/Matrix-APIchange/src/chm_common.c
~ /branches/Matrix-APIchange/src/chm_common.h
~ /branches/Matrix-APIchange/src/Csparse.c
~ /branches/Matrix-APIchange/src/dense.c
~ /branches/Matrix-APIchange/src/dgCMatrix.c
~ /branches/Matrix-APIchange/src/dsCMatrix.c
~ /branches/Matrix-APIchange/src/dtTMatrix.c
~ /branches/Matrix-APIchange/src/sparseQR.c
~ /branches/Matrix-APIchange/src/Tsparse.c
~ /branches/Matrix-APIchange/src/t_gCMatrix_colSums.c

Rev 4556 – Define and use the Alloca macro (like Calloc but calling ...

bates — Thu, 05 Jul 2007 22:11:03 +0000

bates – 2 file(s) modified
Define and use the Alloca macro (like Calloc but calling alloca)

~ /branches/Matrix-APIchange/src/dgCMatrix.c
~ /branches/Matrix-APIchange/src/Mutils.h

Rev 4550 – Add the macro N_AS_CHM_DN to "alloca" the required amount of ...

bates — Thu, 05 Jul 2007 18:12:08 +0000

bates – 1 file(s) modified
Add the macro N_AS_CHM_DN to "alloca" the required amount of memory then call M_numeric_as_chm_dense.

~ /branches/Matrix-APIchange/inst/include/Matrix.h

Rev 4549 – port changes (4545..4548) from trunk

maechler — Thu, 05 Jul 2007 12:22:06 +0000

maechler – 17 file(s) modified
port changes (4545..4548) from trunk

~ /branches/Matrix-APIchange/ChangeLog
~ /branches/Matrix-APIchange/Done
+ /branches/Matrix-APIchange/man/printSpMatrix.Rd (copied from /trunk/Matrix/man/printSpMatrix.Rd@4548)
~ /branches/Matrix-APIchange/man/sparseMatrix-class.Rd
~ /branches/Matrix-APIchange/NAMESPACE
~ /branches/Matrix-APIchange/R/ddenseMatrix.R
~ /branches/Matrix-APIchange/R/dsTMatrix.R
~ /branches/Matrix-APIchange/R/dtTMatrix.R
~ /branches/Matrix-APIchange/R/lgCMatrix.R
~ /branches/Matrix-APIchange/R/ngCMatrix.R
~ /branches/Matrix-APIchange/R/pMatrix.R
~ /branches/Matrix-APIchange/R/Rsparse.R
~ /branches/Matrix-APIchange/R/sparseMatrix.R
~ /branches/Matrix-APIchange/R/Tsparse.R
~ /branches/Matrix-APIchange/src/cs_utils.c
~ /branches/Matrix-APIchange/src/lgCMatrix.c
~ /branches/Matrix-APIchange/tests/Class+Meth.R

Rev 4544 –

bates — Wed, 04 Jul 2007 16:27:48 +0000

bates – 1 file(s) modified

~ /branches/Matrix-APIchange/ChangeLog

Rev 4543 – CSP typedef for *cs and macro AS_CSP

bates — Wed, 04 Jul 2007 16:21:00 +0000

bates – 5 file(s) modified
CSP typedef for *cs and macro AS_CSP

~ /branches/Matrix-APIchange/src/cs_utils.c
~ /branches/Matrix-APIchange/src/cs_utils.h
~ /branches/Matrix-APIchange/src/dgCMatrix.c
~ /branches/Matrix-APIchange/src/dtCMatrix.c
~ /branches/Matrix-APIchange/src/sparseQR.c

Rev 4530 – API change - pass the empty structure to the as_cholmod_x ...

bates — Sun, 01 Jul 2007 13:48:03 +0000

bates – 14 file(s) modified
API change - pass the empty structure to the as_cholmod_x functions

~ /branches/Matrix-APIchange/DESCRIPTION
~ /branches/Matrix-APIchange/inst/include/Matrix.h
~ /branches/Matrix-APIchange/inst/include/Matrix_stubs.c
~ /branches/Matrix-APIchange/src/CHMfactor.c
~ /branches/Matrix-APIchange/src/chm_common.c
~ /branches/Matrix-APIchange/src/chm_common.h
~ /branches/Matrix-APIchange/src/Csparse.c
~ /branches/Matrix-APIchange/src/dense.c
~ /branches/Matrix-APIchange/src/dgCMatrix.c
~ /branches/Matrix-APIchange/src/dsCMatrix.c
~ /branches/Matrix-APIchange/src/dtTMatrix.c
~ /branches/Matrix-APIchange/src/Mutils.h
~ /branches/Matrix-APIchange/src/Tsparse.c
~ /branches/Matrix-APIchange/src/t_gCMatrix_colSums.c

Rev 4529 – Creating a branch for the API changes from the 0.99875 ...

bates — Sun, 01 Jul 2007 13:27:16 +0000

bates – 1 file(s) modified
Creating a branch for the API changes from the 0.99875 series to the 0.999375 series

+ /branches/Matrix-APIchange (copied from /trunk/Matrix@4528)

Rev 4527 – add session- and hardware-info to Comparisons

maechler — Sat, 30 Jun 2007 09:05:11 +0000

maechler – 3 file(s) modified
add session- and hardware-info to Comparisons

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/inst/doc/Comparisons.Rnw
~ /trunk/Matrix/NAMESPACE

Rev 4518 – Math/Math2: setGeneric adaption for todays` R-devel

maechler — Fri, 29 Jun 2007 16:43:47 +0000

maechler – 6 file(s) modified
Math/Math2: setGeneric adaption for todays` R-devel

~ /trunk/Matrix/.Rbuildignore
~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/spMatrix.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/sparseMatrix.R

Rev 4513 – update to all three vignettes

maechler — Wed, 27 Jun 2007 19:57:16 +0000

maechler – 3 file(s) modified
update to all three vignettes

~ /trunk/Matrix/inst/doc/Comparisons.Rnw
~ /trunk/Matrix/inst/doc/Intro2Matrix.Rnw
~ /trunk/Matrix/inst/doc/Introduction.Rnw

Rev 4501 – xsparseVector etc (smarter coercions)

maechler — Sat, 23 Jun 2007 18:08:48 +0000

maechler – 11 file(s) modified
xsparseVector etc (smarter coercions)

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/inst/doc/Intro2Matrix.Rnw
~ /trunk/Matrix/man/colSums.Rd
~ /trunk/Matrix/man/sparseVector-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/colSums.R
~ /trunk/Matrix/R/sparseVector.R
~ /trunk/Matrix/TODO

Rev 4500 – colSums() etc update (fix for lgC*)

maechler — Sat, 23 Jun 2007 18:08:17 +0000

maechler – 4 file(s) modified
colSums() etc update (fix for lgC*)

~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/t_gCMatrix_colSums.c
~ /trunk/Matrix/tests/simple.R

Rev 4499 – use template instead of huge macro for [diln]gcMatrix_colSums

maechler — Sat, 23 Jun 2007 09:43:30 +0000

maechler – 2 file(s) modified
use template instead of huge macro for [diln]gcMatrix_colSums

~ /trunk/Matrix/src/dgCMatrix.c
+ /trunk/Matrix/src/t_gCMatrix_colSums.c

Rev 4496 – update + comment

maechler — Thu, 21 Jun 2007 21:32:39 +0000

maechler – 3 file(s) modified
update + comment

~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/DEPS.mkf_make.sh
~ /trunk/Matrix/src/dtTMatrix.c

Rev 4483 – colSums, ... rowMeans for all Matrices; notably sparse ones via ...

maechler — Tue, 19 Jun 2007 16:16:58 +0000

maechler – 25 file(s) modified
colSums, ... rowMeans for all Matrices; notably sparse ones via [diln]gCMatrix_colSums C code

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/man/colSums.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/RsparseMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
+ /trunk/Matrix/R/colSums.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/Rsparse.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/sparseVector.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 4474 –

bates — Mon, 18 Jun 2007 16:15:49 +0000

bates – 1 file(s) modified

~ /trunk/Matrix/ChangeLog

Rev 4473 – Modified dgCMatrix_colSums for sparseVector result

bates — Mon, 18 Jun 2007 16:14:06 +0000

bates – 1 file(s) modified
Modified dgCMatrix_colSums for sparseVector result

~ /trunk/Matrix/src/dgCMatrix.c

Rev 4472 – Added Matrix_lengthSym

bates — Mon, 18 Jun 2007 16:12:45 +0000

bates – 2 file(s) modified
Added Matrix_lengthSym

~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Syms.h

Rev 4471 – no longer use backquote (" ` ") in messages

maechler — Sat, 16 Jun 2007 19:26:30 +0000

maechler – 2 file(s) modified
no longer use backquote (" ` ") in messages

~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/cs_utils.c

Rev 4470 – misc. cleanup

maechler — Sat, 16 Jun 2007 18:37:48 +0000

maechler – 4 file(s) modified
misc. cleanup

~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/zzz.R
~ /trunk/Matrix/tests/factorizing.R
~ /trunk/Matrix/tests/indexing.Rout.save

Rev 4469 – kronecker buglet fix

maechler — Sat, 16 Jun 2007 18:34:05 +0000

maechler – 3 file(s) modified
kronecker buglet fix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/kronecker.R
~ /trunk/Matrix/tests/simple.R

Rev 4468 – + print(, extra args)

maechler — Sat, 16 Jun 2007 18:31:51 +0000

maechler – 5 file(s) modified
+ print(<sparse>, extra args)

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/sparseMatrix.R

Rev 4467 –

bates — Sat, 16 Jun 2007 15:54:54 +0000

bates – 1 file(s) modified

~ /trunk/Matrix/ChangeLog

Rev 4466 – added dgCMatrix_colSums for [col,row][Sums,Means]

bates — Sat, 16 Jun 2007 15:52:56 +0000

bates – 4 file(s) modified
added dgCMatrix_colSums for [col,row][Sums,Means]

~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 4465 – add qr() based LS example, comparing solution with Chol() one.

maechler — Sat, 16 Jun 2007 11:54:40 +0000

maechler – 1 file(s) modified
add qr() based LS example, comparing solution with Chol() one.

~ /trunk/Matrix/man/KNex.Rd

Rev 4464 –

bates — Fri, 15 Jun 2007 23:17:45 +0000

bates – 1 file(s) modified

~ /trunk/Matrix/ChangeLog

Rev 4463 – Don't need an interactions class. Use the row names ...

bates — Fri, 15 Jun 2007 23:13:43 +0000

bates – 3 file(s) modified
Don't need an interactions class. Use the row names to store the levels - duh

~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/R/sparseMatrix.R

Rev 4462 –

bates — Fri, 15 Jun 2007 18:22:25 +0000

bates – 1 file(s) modified

~ /trunk/Matrix/ChangeLog

Rev 4461 – draft "indicators" class

bates — Fri, 15 Jun 2007 18:20:26 +0000

bates – 2 file(s) modified
draft "indicators" class

~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/R/AllClass.R

Rev 4460 – added lm.fit.sparse (unexported), coercion of "factor" to dgCMatrix and dgCMatrix_cholsol

bates — Fri, 15 Jun 2007 18:19:23 +0000

bates – 5 file(s) modified
added lm.fit.sparse (unexported), coercion of "factor" to dgCMatrix and dgCMatrix_cholsol

~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 4457 – fix last-second typo

maechler — Thu, 14 Jun 2007 10:53:07 +0000

maechler – 1 file(s) modified
fix last-second typo

~ /trunk/Matrix/tests/simple.R

Rev 4456 – more strict validity checking for Csparse

maechler — Thu, 14 Jun 2007 10:46:10 +0000

maechler – 5 file(s) modified
more strict validity checking for Csparse

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/tests/simple.R

Rev 4444 – few misc.

maechler — Thu, 07 Jun 2007 09:04:34 +0000

maechler – 6 file(s) modified
few misc.

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/nMatrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 4443 – another callGeneric fix

maechler — Thu, 07 Jun 2007 09:03:40 +0000

maechler – 2 file(s) modified
another callGeneric fix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/Auxiliaries.R

Rev 4442 – + another kronecker method [against infinite recursion]

maechler — Thu, 07 Jun 2007 08:54:16 +0000

maechler – 2 file(s) modified
+ another kronecker method [against infinite recursion]

~ /trunk/Matrix/man/kronecker-methods.Rd
~ /trunk/Matrix/R/kronecker.R

Rev 4441 – modularize Makefile(.win) [checked on Uwe`s server]

maechler — Thu, 07 Jun 2007 08:51:52 +0000

maechler – 3 file(s) modified
modularize Makefile(.win) [checked on Uwe`s server]

~ /trunk/Matrix/src/Makefile
~ /trunk/Matrix/src/Makefile.win
~ /trunk/Matrix/src/Win.mk

R-packages – /branches/Matrix-APIchange/

Rev 4561 – *** empty log message ***

Rev 4560 – Replace most calls to Calloc by Alloca

Rev 4559 – Remove Harwell-Boeing input/output functions - no longer used

Rev 4558 – more R_CheckStack()s

Rev 4556 – Define and use the Alloca macro (like Calloc but calling ...

Rev 4550 – Add the macro N_AS_CHM_DN to "alloca" the required amount of ...

Rev 4549 – port changes (4545..4548) from trunk

Rev 4544 –

Rev 4543 – CSP typedef for *cs and macro AS_CSP

Rev 4530 – API change - pass the empty structure to the as_cholmod_x ...

Rev 4529 – Creating a branch for the API changes from the 0.99875 ...

Rev 4527 – add session- and hardware-info to Comparisons

Rev 4518 – Math/Math2: setGeneric adaption for todays` R-devel

Rev 4513 – update to all three vignettes

Rev 4501 – xsparseVector etc (smarter coercions)

Rev 4500 – colSums() etc update (fix for lgC*)

Rev 4499 – use template instead of huge macro for [diln]gcMatrix_colSums

Rev 4496 – update + comment

Rev 4483 – colSums, ... rowMeans for all Matrices; notably sparse ones via ...

Rev 4474 –

Rev 4473 – Modified dgCMatrix_colSums for sparseVector result

Rev 4472 – Added Matrix_lengthSym

Rev 4471 – no longer use backquote (" ` ") in messages

Rev 4470 – misc. cleanup

Rev 4469 – kronecker buglet fix

Rev 4468 – + print(, extra args)

Rev 4467 –

Rev 4466 – added dgCMatrix_colSums for [col,row][Sums,Means]

Rev 4465 – add qr() based LS example, comparing solution with Chol() one.

Rev 4464 –

Rev 4463 – Don't need an interactions class. Use the row names ...

Rev 4462 –

Rev 4461 – draft "indicators" class

Rev 4460 – added lm.fit.sparse (unexported), coercion of "factor" to dgCMatrix and dgCMatrix_cholsol

Rev 4457 – fix last-second typo

Rev 4456 – more strict validity checking for Csparse

Rev 4444 – few misc.

Rev 4443 – another callGeneric fix

Rev 4442 – + another kronecker method [against infinite recursion]

Rev 4441 – modularize Makefile(.win) [checked on Uwe`s server]

Rev 4561 – * empty log message *