================================================= This is an automated summary of the status of the R-bugs repository. Note that this may be neither complete nor perfectly correct at any given instance: Not all bugs are reported, and some reported bugs may have been fixed, but the repository not yet updated. Some bug fixes are difficult to verify because they pertain to specific hardware or operating system versions. If you have information to contribute, please do so. If you happen to know how to fix a problem please send patches to the bug repository, too. New bugs are reported either through the web interface at r-bugs.r-project.org or via email to r-bugs@r-project.org. The bug.report() function can be used to automate parts of the procedure on many systems. Followups on older bugs can be done by including the string "(PR#999)" in the Subject of an email (change 999 to the actual reference number, of course!). ================================================= Directory: Accuracy * PR# 1218 * Subject: behavior of r* and d* functions at boundaries From: Ben Bolker Date: Mon, 17 Dec 2001 11:04:27 -0500 --points 1 and 2 were fixed for 1.4.0 * PR# 1228 * Subject: bug with var(rep(1e30, 3)) From: Emmanuel Paradis Date: Wed, 26 Dec 2001 13:03:31 +0100 * PR# 1244 * Subject: possible bug in det using method="qr" From: armin@approximity.com Date: Sat, 5 Jan 2002 01:48:13 +0100 (MET) Directory: Add-ons * PR# 974 * Subject: Lattice: panel.superpose with ordered factor groups From: John Maindonald Date: Sat, 9 Jun 2001 11:08:51 +1000 (EST) --The warning is standard S and R behaviour. --Probably xyplot needs to avoid it (by unclassing?) --Still there in lattice 0.3-0. * PR# 1038 * Subject: nlme: bug in getCovariateFormula From: Setzer.Woodrow@epamail.epa.gov Date: Tue, 31 Jul 2001 11:24:09 -0400 --change needed in package nlme * PR# 1044 * Subject: Polymarsall.c From: pleu@hotmail.com Date: Tue, 7 Aug 2001 22:42:07 +0200 (MET DST) * PR# 1116 * Subject: get.hist.quote does not work From: arto.luoma@uta.fi Date: Thu, 4 Oct 2001 14:45:29 +0200 (MET DST) --Seems specific to one locale on one system. --The bug is unlikely to be in R. * PR# 1178 * Subject: segfault using svm from e1071 From: Jan Rychter Date: Tue, 20 Nov 2001 23:38:17 +0100 * PR# 1199 * Subject: pixmap: infinite recursion with nonascii pnm-files From: thomas.baumann@ch.tum.de Date: Fri, 7 Dec 2001 11:07:52 +0100 (CET) * PR# 1249 * Subject: cluster - clusplot.default From: Kjetilh Halvorsen Date: Mon, 7 Jan 2002 14:55:27 -0400 (BOT) * PR# 1266 * Subject: bug in survival package basehaz function From: Nicholas Lewin-Koh Date: Wed, 16 Jan 2002 14:15:21 +0800 (GMT-8) Directory: Analyses none Directory: Documentation * PR# 988 * Subject: input for R-intro From: "Paul E. Johnson" Date: Mon, 18 Jun 2001 13:57:10 -0500 * PR# 1011 * Subject: R-intro suggestions part II From: "Paul E. Johnson" Date: Tue, 03 Jul 2001 15:50:06 -0500 * PR# 1136 * Subject: cex/col/etc. in title(): documentation? From: Ben Bolker Date: Mon, 22 Oct 2001 11:55:14 -0400 (EDT) --MM:actually the documentation still could elaborate a bit.. * PR# 1195 * Subject: help(dbinom) recommended documentation improvement From: Rich Heiberger Date: Tue, 4 Dec 2001 11:29:58 -0500 (EST) --This isn't really a bug: the line in question is a plain-text equation, not a --piece of R code. * PR# 1257 * Subject: documentation of `las' on `par' help page From: Achim Zeileis Date: Fri, 11 Jan 2002 12:30:20 +0100 Directory: Graphics * PR# 202 * Subject: persp box occlusion bug From: wsi@gcal.ac.uk Date: Wed, 2 Jun 1999 15:02:03 +0200 (MET DST) --The persp algorithm does not apply the occlusion rules to the frame, --which is always plotted first. --A bug, but not very simple to fix. * PR# 660 * Subject: identify.default ignores any setting of cex. From: Prof Brian Ripley Date: Fri, 15 Sep 2000 10:23:39 +0100 (BST) * PR# 776 * Subject: strwidth does not take font into account From: Martyn Plummer Date: Tue, 19 Dec 2000 14:56:01 +0100 (CET) --This needs a substantial redesign. * PR# 791 * Subject: par(lab= *) / axis(*) bug From: maechler@stat.math.ethz.ch Date: Fri, 22 Dec 2000 10:59:26 +0100 * PR# 816 * Subject: dotplot: character size of labels From: RINNER Heinrich Date: Thu, 18 Jan 2001 14:54:32 +0100 --Suggested fix is incorporated in 1.2.2. -- --There is a deeper problem: mtext() ignores par(cex=.5) in general. --To see the problem try: par(cex=.5); mtext("hi") --Paul thinks the right fix is to change the argument list for mtext so that --cex=par(cex) by default rather than cex=NA by default (plus corresponding --internal changes to do_mtext in plot.c). --This needs to be done very carefully because (i) the change suggested above --mayhave side-effects in many other pieces of interpreted code --(ii) do_mtext ignores dd->gp.cexbase unlike, for example, do_plot_xy --and anything to do with cexbase needs extreme care. * PR# 820 * Subject: interaction.plot From: "Mark M. Span" Date: Mon, 22 Jan 2001 10:47:39 +0100 --mtext is unscaled by default. It is not clear if this should --use the par("cex") setting or an inline cex setting such as cex.axis. --It might make more sense to use axis rather than mtext, as boxplot does. * PR# 828 * Subject: termplot fails for composite non-factor terms From: John Maindonald Date: Sat, 27 Jan 2001 11:57:37 +1100 (EST) --Neither of the proposed changes actually works in sufficient generality. -- --The easy and unimportant part of this, the labels, is fixed in 1.2.2. Getting --the data right is a project for 1.3 * PR# 831 * Subject: screen can't go back to (split) screen with log="y" plot From: Thomas Vogels Date: 30 Jan 2001 00:39:41 -0500 --Still there. Suggested fix included in followups, but we didn't get around to --try it in time for 1.2.3. -- --Fix doesn't work. One problem is that the opar<-par();par(opar) idiom updates --xaxp before xlog, and the new value of xaxp may only be valid under the new --value of xlog. * PR# 837 * Subject: screen doesn't handle redrawing properly From: Thomas Vogels Date: 01 Feb 2001 14:20:52 -0500 * PR# 887 * Subject: axis(adj=anything) has no effect From: jhallman@frb.gov Date: Wed, 28 Mar 2001 20:51:05 +0200 (MET DST) * PR# 916 * Subject: par(mgp) bug From: paul@stat.auckland.ac.nz Date: Fri, 20 Apr 2001 08:33:45 +1200 (NZST) * PR# 943 * Subject: legend() with xpd=T; omission of initial plot character From: John Maindonald Date: Sun, 20 May 2001 10:35:16 +1000 * PR# 997 * Subject: las=1 with log axis From: Peter Dalgaard BSA Date: Wed, 27 Jun 2001 11:54:06 +0200 * PR# 1045 * Subject: Palette changes on redraw From: Peter Dalgaard BSA Date: 08 Aug 2001 19:08:01 +0200 * PR# 1088 * Subject: barplot forces xpd=TRUE From: Peter Whiting Date: Sat, 8 Sep 2001 10:19:00 -0500 * PR# 1147 * Subject: postscript problem From: kjetil halvorsen Date: Fri, 26 Oct 2001 15:23:45 -0400 --This seems to be a problem with screen/layout rather than postscript. * PR# 1157 * Subject: identify(...plot=F) From: Rolf Turner Date: Fri, 2 Nov 2001 09:43:49 +0800 (WST) * PR# 1161 * Subject: x-axis label in persp() From: Rolf Turner Date: Wed, 7 Nov 2001 18:07:22 +0800 (WST) * PR# 1207 * Subject: boxplot labels incorrect when horizontal = TRUE From: Rashid Nassar Date: Sun, 9 Dec 2001 21:46:32 -0500 (EST) * PR# 1235 * Subject: Axes labelling with logarithmic scales From: tobias.hoevekamp@ilw.agrl.ethz.ch Date: Thu, 3 Jan 2002 15:29:02 +0100 (MET) * PR# 1243 * Subject: abline and log plots From: stephen@cogsci.ed.ac.uk Date: Sat, 5 Jan 2002 01:11:47 +0100 (MET) * PR# 1248 * Subject: piechart default colour From: Peter Dalgaard BSA Date: 07 Jan 2002 18:54:02 +0100 Directory: In-Out none Directory: Installation * PR# 1222 * Subject: configure: sed: Function s%@PDFLATEX@%/usr/local/bin/pdflatex%g From: Peter Kleiweg Date: Thu, 20 Dec 2001 14:09:42 +0100 (CET) --problem is on hppa2.0-hp-hpux10.20: may be HP-UX specific Directory: Language * PR# 408 * Subject: convolution bug From: wsimpson@gcal.ac.uk Date: Fri, 28 Jan 2000 11:17:36 +0100 (MET) * PR# 412 * Subject: anomalies with call objects From: Peter Dalgaard BSA Date: 06 Feb 2000 01:18:50 +0100 * PR# 669 * Subject: Bug(s) w/ rbind.data.frame(); fix also read.table(*, as.is = TRUE) ? From: Martin Maechler Date: Mon, 25 Sep 2000 10:17:15 +0200 --status of AsIs columns * PR# 921 * Subject: Managed to confuse match.arg From: J.C.Rougier@durham.ac.uk Date: Wed, 25 Apr 2001 12:22:54 +0100 (BST) * PR# 1073 * Subject: Wierd problem comparing numeric values and list using == From: "Warnes, Gregory R" Date: Fri, 24 Aug 2001 22:07:41 -0400 --see also PR#1075 * PR# 1076 * Subject: Re: [Rd] Wierd problem comparing numeric values and list using == From: John Chambers Date: Mon, 27 Aug 2001 08:44:22 -0400 --part of PR#1073 * PR# 1186 * Subject: a patch to tapply From: Vadim Ogranovich Date: Thu, 29 Nov 2001 14:48:35 -0600 * PR# 1193 * Subject: Re: [R] appending similar data frames? From: Thomas Lumley Date: Mon, 3 Dec 2001 13:46:35 -0800 (PST) * PR# 1214 * Subject: syntax questtion, maybe a bug From: Rich Heiberger Date: Thu, 13 Dec 2001 13:46:54 -0500 (EST) --Is .2logl meant to be a valid name in R? It is S * PR# 1241 * Subject: Problem with "missing" in "local" From: J.C.Rougier@durham.ac.uk Date: Fri, 4 Jan 2002 13:34:34 GMT Directory: Low-level * PR# 989 * Subject: "[.data.frame" allows un-named 3rd subscript From: "Charles C. Berry" Date: Mon, 18 Jun 2001 13:13:46 -0700 (PDT) * PR# 1063 * Subject: interrupting Sys.sleep From: Thomas Lumley Date: Mon, 20 Aug 2001 13:55:29 -0700 (PDT) * PR# 1068 * Subject: Interrupts (was Re: [Rd] X11 protocol errors ...) From: Luke Tierney Date: Wed, 22 Aug 2001 19:32:51 -0500 --see also followup in PR#1069 * PR# 1069 * Subject: Interrupts (was Re: [Rd] X11 protocol errors ...) From: "John W. Eaton" Date: Wed, 22 Aug 2001 21:56:33 -0500 --part of PR#1068 * PR# 1120 * Subject: bug in write.table? From: Ott Toomet Date: Sun, 7 Oct 2001 18:24:34 +0200 (CEST) --Traced down to an effect of read.dta in foreign interacting with do_paste. Fixed --in foreign, but do_paste may need to use strlen() rather than LENGTH(). -- * PR# 1211 * Subject: crash bug in get("function.name")() From: Rich Heiberger Date: Tue, 11 Dec 2001 17:34:07 -0500 (EST) * PR# 1247 * Subject: Mishandling missing "..." From: David Brahm Date: Mon, 7 Jan 2002 10:52:09 -0500 * PR# 1267 * Subject: hashing NaN From: Thomas Lumley Date: Wed, 16 Jan 2002 16:29:35 -0800 (PST) --Patch put in R-devel for further testing. Directory: Macintosh none Directory: Misc * PR# 1126 * Subject: R-bug report www page whishlist From: jens.lund@nordea.com Date: Wed, 10 Oct 2001 18:24:29 +0200 (MET DST) * PR# 1158 * Subject: bug.report()sends empty message From: Paul Gilbert Date: Mon, 05 Nov 2001 10:05:27 -0500 Directory: Models none Directory: Startup none Directory: System-specific * PR# 848 * Subject: X11 device doesn't handle destroy events correcly From: Thomas Vogels Date: 13 Feb 2001 17:40:46 -0500 * PR# 1020 * Subject: .Call and Mandrake 8.0 From: lcottret@yahoo.fr Date: Wed, 11 Jul 2001 15:34:23 +0200 (MET DST) --problem with symbol names only on Mandrake 8.0, not 7.2 --needs reply to follow-up * PR# 1097 * Subject: R 1.3.1 fails 'make check' on arm in the Bessel example From: Dirk Eddelbuettel Date: Thu, 20 Sep 2001 23:54:19 -0500 * PR# 1140 * Subject: Possible bug, Rprof() and scan(pipe()) From: Don MacQueen Date: Tue, 23 Oct 2001 13:50:26 -0700 --Doesn't happen on Solaris or Linux * PR# 1145 * Subject: Problem testing R version 1.3.1 on SGI Irix From: Gordon Lack Date: Fri, 26 Oct 2001 19:04:04 +0100 --error from using SGI libblas (not reported on other systems?) --use --without-blas * PR# 1261 * Subject: R_140 AND RHL_72 AND Packages From: Patrick Gonin Date: Wed, 15 Jan 2003 13:25:17 +0100 --Seems to relate to RH7.2 rpms * PR# 1268 * Subject: Solaris 2.6 Compile From: gm81640@development.nssmb.com Date: Thu, 17 Jan 2002 06:28:26 +0100 (MET) --Most likely a compiler installation problem * PR# 1272 * Subject: eigen segfault with GCC 3 on Solaris From: Paul Gilbert Date: Thu, 17 Jan 2002 15:14:33 -0500 --Seems to be a problem with g77 in gcc 3.0.2 on Solaris only. --Probably a compiler bug * PR# 1275 * Subject: compile problem with bessel_i.c on IRIX64 flexor 6.5 10100655 IP35 (uname -a) From: Walter Tautz Date: Tue, 22 Jan 2002 10:05:20 -0500 (EST) Directory: TooMuchAtOnce none Directory: Windows none Directory: incoming * PR# 1240 * Subject: R CMD check From: hoffmann@wsl.ch Date: Fri, 4 Jan 2002 12:51:15 +0100 (MET) * PR# 1283 * Subject: max/min of NULL gives MININT/MAXINT instead of -INF/+INF From: "Warnes, Gregory R" Date: Fri, 25 Jan 2002 14:36:52 -0500 * PR# 1284 * Subject: make check fails when R_HOME env var set From: "Warnes, Gregory R" Date: Fri, 25 Jan 2002 15:08:33 -0500 * PR# 1288 * Subject: dimnames usage in ts From: tkeitt@ms.cc.sunysb.edu Date: Tue, 29 Jan 2002 21:11:08 +0100 (MET)