#! /bin/sh # # ${R_HOME}/bin/INSTALL for installing add-on packages # @configure_input@ ## Trap interrupts, most importantly 2 (^C from keyboard) trap do_exit_on_error 1 2 15 revision='$Rev$' version=`set - ${revision}; echo ${2}` version="R add-on package installer ${version} Copyright (C) 2000-2006 The R Core Development Team. This is free software; see the GNU General Public Licence version 2 or later for copying conditions. There is NO warranty." usage="Usage: R CMD INSTALL [options] pkgs Install the add-on packages specified by pkgs. The elements of pkgs can be relative or absolute paths to directories with the package (bundle) sources, or to gzipped package 'tar' archives. The library tree to install to can be specified via '--library'. By default, packages are installed in the library tree rooted at the first directory given in the environment variable R_LIBS if this is set and non-null, and into the default R library tree (${R_HOME}/library) otherwise. Options: -h, --help print short help message and exit -v, --version print INSTALL version info and exit --configure-args=ARGS set arguments for the package's configure script (if any) --configure-vars=VARS set variables for the configure script (if any) -c, --clean remove all files created during installation -d, --debug turn on shell and build-help debugging -l, --library=LIB install packages to library tree LIB --no-configure do not use the package's configure script --no-docs do not build and install documentation --with-package-versions allow for multiple versions of the same package --use-zip-data collect data files in zip archive --use-zip-help collect help and examples into zip archives --use-zip combine '--use-zip-data' and '--use-zip-help' --fake do minimal install for testing purposes --no-lock install on top of any existing installation without using a lock directory --libs-only only install the libs directory --build build binary tarball(s) of the installed package(s) Deprecated options: -s, --save[=ARGS] save the package source as an image file, and arrange for this file to be loaded when the package is attached; if given, ARGS are passed to R when creating the save image --no-save do not save the package source as an image file --lazy use lazy loading --no-lazy do not use lazy loading --lazy-data use lazy loading for data --no-lazy-data do not use lazy loading for data (current default) Report bugs to ." ## ## This is a *shell* script. ## According to the R Coding Standards (see R-exts), Perl can be assumed ## for *source*, but not for *binary* installations. ## ## ## We try to be defensive about possible white space in file names, ## hence all the strange quoting ... ## umask 022 R_VERSION='@VERSION@' GETWD='@GETWD@' R_GZIPCMD='@R_GZIPCMD@' NO_PERL5=@NO_PERL5@ NO_PERL5_MSG="\ *** Formatting and installing R help pages needs Perl version 5, which *** does not seem to be installed on your system or is not in your path. *** Please install either Perl 5 on your system and re-configure R or *** get the PDF reference manual from the nearest CRAN server. *** The CRAN master site can be found at *** http://cran.r-project.org/" : ${R_ARCH=@R_ARCH@} SED=@SED@ if mkdir -p . 2>/dev/null; then MKDIR_P="mkdir -p" else MKDIR_P="${R_HOME}/bin/mkinstalldirs" fi warning () { echo "WARNING: $*" >&2 ; } error () { echo "ERROR: $*" >&2 ; } startdir=`${GETWD}` : ${TMPDIR=/tmp} { tmpdir=`(mktemp -d -q "${TMPDIR}/R.INSTALL.XXXXXX") 2>/dev/null` \ && test -n "${tmpdir}" && test -d "${tmpdir}" ; } || { test -n "${RANDOM}" && tmpdir=${TMPDIR}/R.INSTALL$$-${RANDOM} \ && (${MKDIR_P} "${tmpdir}") ; } || { tmpdir=${TMPDIR}/R.INSTALL.$$-`date +%m%d%H%M%S` && (${MKDIR_P} "${tmpdir}") ; } || { tmpdir=${TMPDIR}/R.INSTALL.$$ && (${MKDIR_P} "${tmpdir}") ; } || (error "cannot create temporary directory" && exit 1) tmpdir=`cd "${tmpdir}" && ${GETWD}` : ${R_OSTYPE=unix} ## ## Unix only ... but Windows has INSTALL as a Perl script. R_EXE="${R_HOME}/bin/R" ## ## ## This could be made a bit more general: if R CMD INSTALL is run by ## another tool (e.g., when building or checking a package, its messages ## should be a section level deeper (at least). So we could have an ## argument to set the initial secnumdepth (0 by default), and work ## against this ... message () { echo "${stars} $*"; } stars="*" ## . "${R_SHARE_DIR}/sh/dcf.sh" # get_dcf_field() tilde_expand () { h=`echo "${HOME}" | ${SED} 's,/,\\\/,g'` ## (Need to escape whatever we use as sed delimiter.) echo "$1" | ${SED} "s/^~/${h}/" } get_packages () { ## get the full path names to all packages contained in $1. ## NOTE: modifies pkgs! if grep "^Contains:" "${1}/DESCRIPTION" >/dev/null; then bundlepkg=`get_dcf_field Contains "${1}/DESCRIPTION"` for p in ${bundlepkg}; do pkgs="${pkgs} \"`cd "${1}/${p}" && ${GETWD}`\"" if test -f "${1}/${p}/DESCRIPTION.in"; then ## Try being defensive about missing final newlines, or extra ## empty lines. (cat "${1}/${p}/DESCRIPTION.in" "${1}/DESCRIPTION" echo) | ${SED} '/^ *$/d' > "${1}/${p}/DESCRIPTION" fi done else pkgs="${pkgs} \"`cd "${1}" && ${GETWD}`\"" fi } parse_description_field () { # fieldname tmp=`get_dcf_field ${1} DESCRIPTION` if test "x$tmp" != "x" ; then case "$tmp" in yes|Yes|true|True|TRUE) value=true ;; no|No|false|False|FALSE) value=false ;; *) error "invalid value of ${1} field in DESCRIPTION" do_exit_on_error ;; esac else value="missing" fi } do_cleanup_tmpdir () { ## Solaris will not remove any directory in the current path cd "${startdir}" if test -d "${tmpdir}"; then rm -rf "${tmpdir}" fi } ### ### Setup and command line processing. if test -n "${R_LIBS}"; then lib=`echo "${R_LIBS}" | cut -f1 -d:` else lib="${R_HOME}/library" fi pkgs= clean=false debug=false build_text=true build_html=true build_latex=true build_example=true build_help=true build_help_opts= use_configure=true use_zip_data= use_zip_help= configure_args= configure_vars= with_package_versions=false save="CHECK" save_args= fake=false lazy="auto" lazy_data=false lock=true libs_only=false tar_up=false while test -n "${1}"; do ##DBG echo " in 'R INSTALL' --arg checking-- \$1 = '${1}'" # Debugging case ${1} in -h|--help) echo "${usage}"; do_cleanup_tmpdir; exit 0 ;; -v|--version) echo "${version}"; do_cleanup_tmpdir; exit 0 ;; -c|--clean) clean=true ;; -s|--save) message "Option --save (-s) is deprecated" save=true;; --save=*) message "Option --save is deprecated" save_args=`echo "${1}" | sed -e 's/[^=]*=//'` ;; --lazy) message "Option --lazy is deprecated" lazy=true ;; --no-lazy) message "Option --no-lazy is deprecated" lazy=false ;; --lazy-data) message "Option --lazy-data is deprecated" lazy_data=true ;; --no-lazy-data) message "Option --no-lazy-data is deprecated" lazy_data=false ;; --no-save) message "Option --no-save is deprecated" save=false ;; -d|--debug) debug=true ;; --with-package-versions) with_package_versions=true ;; --no-configure) use_configure=false ;; --no-docs) build_text=false build_html=false build_latex=false build_example=false ;; --no-text) build_text=false ;; --no-html) build_html=false ;; --no-latex) build_latex=false ;; --no-example) build_example=false ;; --use-zip) use_zip_data=true use_zip_help=true ;; --use-zip-data) use_zip_data=true ;; --use-zip-help) use_zip_help=true ;; -l|--library) lib="${2}"; shift ;; --library=*) lib=`echo "${1}" | ${SED} -e 's/[^=]*=//'` ;; --configure-args=*) configure_args=`echo "${1}" | ${SED} -e 's/[^=]*=//'` ;; --configure-vars=*) configure_vars=`echo "${1}" | ${SED} -e 's/[^=]*=//'` ;; --fake) fake=true ;; --no-lock) lock=false ;; --libs-only) libs_only=true ;; --build) tar_up=true ;; *) if test -f "${1}"; then ##DBG echo " in 'R INSTALL' --arg checking-- FILE '${1}'" pkgname=`basename "${1}"` ## Also allow for 'package.tgz' ... pkgname=`basename "${pkgname}" .tgz` pkgname=`echo "${pkgname}" | ${SED} 's/_.*//'` ## Note that we use '-m' so that modification dates are *not* ## preserved when untarring the sources. This is necessary to ## ensure that the preformatted help pages are always rebuilt. ## Otherwise, the build date for an older version may be newer ## than the modification date for the new sources as recorded in ## the tarball ... ${R_GZIPCMD} -dc "${1}" | (cd "${tmpdir}" && ${TAR} -mxf -) ## If we have a binary bundle distribution, the DESCRIPTION file ## is at top level. if test -f "${tmpdir}/DESCRIPTION"; then if grep "^Contains:" "${tmpdir}/DESCRIPTION" >/dev/null; then message "Looks like a binary bundle" get_packages "${tmpdir}" else error "unknown package layout" do_cleanup_tmpdir; exit 1 fi elif test -f "${tmpdir}/${pkgname}/DESCRIPTION"; then get_packages "${tmpdir}/${pkgname}" else error "cannot extract package from '${1}'" do_cleanup_tmpdir; exit 1 fi elif test -f "${1}/DESCRIPTION"; then ##DBG echo " in 'R INSTALL' -f DESCRIPTION --> 'get_packages ${1}'" get_packages "${1}" else warning "invalid package '${1}'" fi ;; esac shift done if (${tar_up} && ${fake}); then error "building a fake installation is disallowed" do_cleanup_tmpdir; exit 1 fi if ${libs_only} ; then lock=false tar_up=false more_than_libs=false else more_than_libs=true fi if ${debug} ; then echo "'Rcmd INSTALL': in startdir= $startdir with tmpdir= $tmpdir" echo " lib= '$lib', pkgs= '$pkgs'" fi if test -z "${pkgs}"; then error "no packages specified" do_cleanup_tmpdir; exit 1 fi lib=`tilde_expand "${lib}"` if (test -d "${lib}" && test -w "${lib}") || \ ${MKDIR_P} "${lib}" 2> /dev/null; then lib=`cd "${lib}" && ${GETWD}` else error "cannot write to or create directory '${lib}'" do_cleanup_tmpdir; exit 2 fi if ${lock} ; then lockdir="${lib}/00LOCK" if ${debug} ; then echo " before checking lockdir= '${lockdir}'" ; fi if test -d "${lockdir}" || test -f "${lockdir}"; then error "failed to lock directory '${lib}' for modifying" echo "Try removing '${lockdir}'" >&2 do_cleanup_tmpdir; exit 3 else ${MKDIR_P} "${lockdir}" if test ${?} -ne 0; then ## This should not really happen ... error "failed to lock directory '${lib}' for modifying" do_cleanup_tmpdir; exit 3 fi fi if ${debug} ; then echo ' after checking lockdir' ; fi fi if ${fake}; then use_configure=false build_text=true build_html=false build_latex=true build_example=false fi if ${build_text}; then build_help_opts="${build_help_opts} --txt" fi if ${build_html}; then build_help_opts="${build_help_opts} --html" fi if ${build_latex}; then build_help_opts="${build_help_opts} --latex" fi if ${build_example}; then build_help_opts="${build_help_opts} --example" fi if test -z "${build_help_opts}"; then build_help=false elif ${debug}; then build_help_opts="--debug ${build_help_opts}" fi if ${debug} ; then echo " build_help_opts= '${build_help_opts}'" ; fi is_first_package=yes ### ### Install a *binary* package (not bundle) from the current directory. do_install_binary () { pkg="${1}" R_PACKAGE_DIR="${2}" R_PACKAGE_NAME="${3}" if test "${pkg}" = "${R_PACKAGE_NAME}"; then message "Installing *binary* package '${pkg}' ..." else message "Installing *binary* package '${pkg}' as '${R_PACKAGE_NAME}' ..." fi if test -f "${R_PACKAGE_DIR}/DESCRIPTION"; then ## Back up previous version. if ${lock}; then mv "${R_PACKAGE_DIR}" "${lockdir}/${R_PACKAGE_NAME}" ; fi ${MKDIR_P} "${R_PACKAGE_DIR}" fi cp -r . "${R_PACKAGE_DIR}" || \ (${TAR} cf - . | (cd "${R_PACKAGE_DIR}" && ${TAR} xf -)) if test ${?} -ne 0; then error "installing binary package failed" do_exit_on_error fi if ${tar_up} ; then echo "${pkg} was already a binary package and will not be rebuilt" fi } ### ### Install a *source* package from the current directory. do_install_source () { pkg_name="${1}" pkg_dir="${4}" ## (The basename of ${pkg_dir} might be different from ${pkg_name}, ## e.g., when building Debian packages from R packages.) ## Make the destination directories available to the developer's ## installation scripts (e.g. configure, etc.) R_PACKAGE_DIR="${2}" R_PACKAGE_NAME="${3}" R_LIBRARY_DIR="${lib}" export R_LIBRARY_DIR export R_PACKAGE_DIR export R_PACKAGE_NAME Type=`get_dcf_field Type DESCRIPTION` if test "$Type" = "Frontend" ; then message "Installing *Frontend* package '${pkg_name}' ..." if ${use_configure} && test -x ./configure ; then eval ${configure_vars} ./configure ${configure_args} if test ${?} -ne 0; then error "configuration failed for package '${pkg_name}'" do_exit_on_error fi fi if test -f ./Makefile ; then ${MAKE} if test ${?} -ne 0; then error "make failed for package '${pkg_name}'" do_exit_on_error fi if ${clean}; then ${MAKE} clean fi return fi fi if test "$Type" = "Translation" ; then message "Installing *Translation* package '${pkg_name}' ..." if test -d "share"; then cp -r ./share/* ${R_SHARE_DIR} fi if test -d "library"; then cp -r ./library ${R_HOME} fi return fi if test "${pkg_name}" = "${R_PACKAGE_NAME}"; then message "Installing *source* package '${pkg_name}' ..." else message "Installing *source* package '${pkg_name}' as '${R_PACKAGE_NAME}' ..." fi stars="**" if test -f "${R_PACKAGE_DIR}/DESCRIPTION"; then ## Back up previous version. if ${lock} ; then mv "${R_PACKAGE_DIR}" "${lockdir}/${R_PACKAGE_NAME}" else if ${more_than_libs}; then ## this is only used for recommended packages installed from .tgz rm -rf "${R_PACKAGE_DIR}" fi fi ${MKDIR_P} "${R_PACKAGE_DIR}" ## Preserve man pages to speed up installation? Only makes sense ## if we install from a non-temporary directory. if ${lock} && test "`cd .. && ${GETWD}`" != \ "`cd \"${tmpdir}\" && ${GETWD}`"; then (cd "${lockdir}/${R_PACKAGE_NAME}" \ && ${TAR} cf - R-ex help html latex 2>/dev/null) | \ (cd "${R_PACKAGE_DIR}" && ${TAR} xf -) fi ## check if we are in a bundle so we can back out the whole bundle if grep "^Bundle:" DESCRIPTION >/dev/null; then if ${tar_up} ; then error "cannot build (nor INSTALL) binary versions of bundles" do_exit_on_error fi bundlepkg=`get_dcf_field Contains ../DESCRIPTION` else bundlepkg=${pkg_name} fi fi if ${use_configure} && test -x ./configure ; then eval ${configure_vars} ./configure ${configure_args} if test ${?} -ne 0; then error "configuration failed for package '${pkg_name}'" do_exit_on_error fi fi if ${more_than_libs}; then for f in COPYING NAMESPACE; do if test -f "${f}"; then cp "${f}" "${R_PACKAGE_DIR}" chmod 644 "${R_PACKAGE_DIR}/${f}" fi done ## Install DESCRIPTION file with build information. echo "tools:::.install_package_description(\".\", \"${R_PACKAGE_DIR}\")" | \ R_DEFAULT_PACKAGES=NULL LC_ALL=C "${R_EXE}" --vanilla >/dev/null if test ${?} -ne 0; then error "installing package DESCRIPTION failed" do_exit_on_error fi fi if test -d src && test "${fake}" != "true"; then message "libs" has_error=false if ${debug}; then set -x; fi ${MKDIR_P} "${R_PACKAGE_DIR}/libs${R_ARCH}" if test -f src/Makefile; then arch=`echo ${R_ARCH} | ${SED} -e 's+^/++'` message "arch - ${arch}" cd src; makefiles="-f \"${R_SHARE_DIR}\"/make/shlib.mk -f Makefile" if test -r "${HOME}/.R/Makevars-${R_PLATFORM}"; then makefiles="${makefiles} -f \"${HOME}/.R/Makevars-${R_PLATFORM}\"" elif test -r "${HOME}/.R/Makevars"; then makefiles="${makefiles} -f \"${HOME}/.R/Makevars\"" fi if test -r Makevars; then makefiles="-f Makevars ${makefiles}" fi eval ${MAKE} ${makefiles} \ && cp *@SHLIB_EXT@ "${R_PACKAGE_DIR}/libs${R_ARCH}" \ || has_error=true; \ cd .. else cd src; srcs=`ls *.[cfC] *.cc *.cpp *.f90 *.f95 2>/dev/null` archs=`(cd ${R_HOME}/bin/exec; ls)` R_ARCH_keep=${R_ARCH} if test -n "${srcs}"; then ## if there is a configure script we install only the main ## sub-architecture if test -x ../configure; then if test -n "${R_ARCH}"; then arch=`echo ${R_ARCH} | ${SED} -e 's+^/++'` message "arch - ${arch}" fi sh "${R_HOME}/bin/SHLIB" -o "${pkg_name}@SHLIB_EXT@" ${srcs} \ && cp *@SHLIB_EXT@ "${R_PACKAGE_DIR}/libs${R_ARCH}" \ || has_error=true; chmod 755 "${R_PACKAGE_DIR}/libs${R_ARCH}/"* else for arch in ${archs}; do rm -f *.o *.so *.sl *.dylib if test "${arch}" = "R"; then R_ARCH=${R_ARCH_keep} export R_ARCH sh "${R_HOME}/bin/SHLIB" -o "${pkg_name}@SHLIB_EXT@" ${srcs} \ && cp *@SHLIB_EXT@ "${R_PACKAGE_DIR}/libs" \ || has_error=true; elif test "${arch}" = "Rgnome"; then R_ARCH=${R_ARCH_keep} else message "arch - ${arch}" R_ARCH="/${arch}" export R_ARCH ${MKDIR_P} "${R_PACKAGE_DIR}/libs${R_ARCH}" sh "${R_HOME}/bin/SHLIB" -o "${pkg_name}@SHLIB_EXT@" ${srcs} \ && cp *@SHLIB_EXT@ "${R_PACKAGE_DIR}/libs${R_ARCH}" \ || has_error=true; chmod 755 "${R_PACKAGE_DIR}/libs${R_ARCH}/"* fi done R_ARCH=${R_ARCH_keep} fi else warning "no source files found" fi cd .. fi if ${has_error}; then error "compilation failed for package '${pkg_name}'" do_exit_on_error fi chmod 755 "${R_PACKAGE_DIR}/libs${R_ARCH}/"* if ${debug}; then set +x; fi fi if ${more_than_libs}; then if test -d R; then message "R" ${MKDIR_P} "${R_PACKAGE_DIR}/R" rm -f "${R_PACKAGE_DIR}/R/"* echo "tools:::.install_package_code_files(\".\", \"${R_PACKAGE_DIR}\")" | \ R_DEFAULT_PACKAGES=NULL LC_ALL=C "${R_EXE}" --vanilla >/dev/null if test ${?} -ne 0; then error "unable to collate files for package '${pkg_name}'" do_exit_on_error fi if test -f "R/sysdata.rda"; then echo "tools:::sysdata2LazyLoadDB(\"R/sysdata.rda\", \"${R_PACKAGE_DIR}/R\")" | \ R_DEFAULT_PACKAGES=NULL LC_ALL=C "${R_EXE}" --vanilla > /dev/null ; \ if test ${?} -ne 0; then \ error "unable to build sysdata DB for package '${pkg_name}'" ; \ do_exit_on_error ; \ fi ; \ fi if ${fake}; then if test -f NAMESPACE; then (echo; echo ".onLoad <- .onAttach <- function(lib, pkg) NULL") >> \ "${R_PACKAGE_DIR}/R/${R_PACKAGE_NAME}" ## ## Tweak fake installation to provide an 'empty' useDynLib() for ## the time being. Completely removing the directive results in ## checkFF() being too aggresive in the case where the presence ## of the directive enables unambiguous symbol resolution w/out ## 'PACKAGE' arguments. However, empty directives are not ## really meant to work ... ${SED} -e 's/useDynLib.*/useDynLib("")/' NAMESPACE > \ "${R_PACKAGE_DIR}/NAMESPACE" ## else (echo; echo ".First.lib <- function(lib, pkg) NULL") >> \ "${R_PACKAGE_DIR}/R/${R_PACKAGE_NAME}" fi fi fi if test -d data; then message "data" ${MKDIR_P} "${R_PACKAGE_DIR}/data" rm -f "${R_PACKAGE_DIR}/data/"* cp data/* "${R_PACKAGE_DIR}/data" 2>/dev/null chmod 644 "${R_PACKAGE_DIR}/data/"* parse_description_field LazyData if test "$value" = "missing" ; then thislazy=${lazy_data} else thislazy=${value} fi if ${thislazy}; then message " moving datasets to lazyload DB" ## it is possible that data in a package will make use of the ## code in the package, so ensure the package we have just ## installed is on the library path. echo "invisible(.libPaths(c(\"${lib}\", .libPaths()))); tools:::data2LazyLoadDB(\"${R_PACKAGE_NAME}\", \"${lib}\")" | \ R_DEFAULT_PACKAGES=NULL LC_ALL=C "${R_EXE}" --vanilla > /dev/null if test ${?} -ne 0; then error "lazydata failed for package '${pkg_name}'" do_exit_on_error fi else if test -n "${use_zip_data}" \ && test -n "${R_UNZIPCMD}" \ && test -n "${R_ZIPCMD}"; then (cd "${R_PACKAGE_DIR}/data"; find . -type f -print > filelist ${R_ZIPCMD} -q -m Rdata * -x filelist 00Index) fi fi fi if test -d demo && test "${fake}" != "true"; then message "demo" ${MKDIR_P} "${R_PACKAGE_DIR}/demo" rm -f "${R_PACKAGE_DIR}/demo/"* echo "tools:::.install_package_demos('.', '${R_PACKAGE_DIR}')" | \ R_DEFAULT_PACKAGES=NULL LC_ALL=C "${R_EXE}" --vanilla --slave > /dev/null if test ${?} -ne 0; then error "installing demos failed" do_exit_on_error fi chmod 644 "${R_PACKAGE_DIR}/demo/"* fi if test -d exec && test "${fake}" != "true"; then message "exec" ${MKDIR_P} "${R_PACKAGE_DIR}/exec" rm -f "${R_PACKAGE_DIR}/exec/"* cp exec/* "${R_PACKAGE_DIR}/exec" 2>/dev/null chmod 755 "${R_PACKAGE_DIR}/exec/"* fi if test -d inst && test "${fake}" != "true"; then message "inst" cp -r inst/* "${R_PACKAGE_DIR}" || \ (cd inst && ${TAR} cf - . | \ (cd "${R_PACKAGE_DIR}" && ${TAR} xf -)) fi parse_description_field SaveImage if test "$value" != "missing" ; then save=${value} fi case ${save} in CHECK) if test -r install.R; then R_SAVE_IMAGE=true; else R_SAVE_IMAGE=false; fi ;; *) R_SAVE_IMAGE=${save} ;; esac ## sanity check if test ! -d R ; then R_SAVE_IMAGE=false fi export R_SAVE_IMAGE if ${R_SAVE_IMAGE}; then message "save image" ## ## We want R to run as quietly as possible when creating the save ## image. But this is tricky: sending options(echo=FALSE) to R via ## stdin (as opposed to writing to a file and reading from it) ## echoes what we sent before shutting up R, which is not what we ## want. Option '--slave' gets around this but also turns off ## saving ... hence we call R with '--slave --save' (in case there ## is no namespace). Argh. ## save_image_defaults="list(compress=TRUE, safe=FALSE)" code_file="${R_PACKAGE_DIR}/R/${pkg_name}" rda_file="${R_PACKAGE_DIR}/R/all.rda" if test -f NAMESPACE; then code_cmd="echo invisible(.libPaths(c(\"${lib}\", .libPaths()))); .getRequiredPackages(); saveNamespaceImage(\"${R_PACKAGE_NAME}\", \"${rda_file}\", \"${lib}\")" loader_file=nsrdaload.R R_save_args="--vanilla --slave" else code_cmd="eval cat \"${code_file}\"" loader_file=firstlib.R R_save_args="--vanilla --slave --save" fi (echo "options(save.image.defaults=${save_image_defaults})"; \ if test -s R_PROFILE.R; then cat R_PROFILE.R; fi; \ echo "invisible(.libPaths(c(\"${lib}\", .libPaths()))); .getRequiredPackages()"; \ ${code_cmd}) | \ R_DEFAULT_PACKAGES= LC_ALL=C "${R_EXE}" ${R_save_args} ${save_args} if test ${?} -ne 0; then error "execution of package source for '${pkg_name}' failed" do_exit_on_error fi test -f NAMESPACE || mv .RData "${rda_file}" ## we used to install the dumped code but this seems a waste of space rm "${code_file}" # mv "${code_file}" "${R_PACKAGE_DIR}/R/${pkg_name}.R" cat "${R_SHARE_DIR}/R/${loader_file}" > "${code_file}" ## If install.R is non-empty, arrange to evaluate the R code it ## contains after the package loader. if test -s install.R; then cat install.R >> "${R_PACKAGE_DIR}/R/${R_PACKAGE_NAME}" fi fi parse_description_field LazyLoad if test "$value" = "missing" ; then thislazy=${lazy} else thislazy=${value} fi if test ! -d R ; then thislazy=false fi ## This test is designed to fail if a loader is used. ## Beware: the wc format is not portable -- some systems give ## size in a left-space-padded first field, and some do not pad. if test "x$thislazy" = "xauto" ; then Rcodesize=`cat ${R_PACKAGE_DIR}/R/${pkg_name} | wc -c` if test ${Rcodesize} -gt 25000 ; then thislazy=true else thislazy=false fi fi if ${thislazy}; then message "preparing package for lazy loading" (if test -s R_PROFILE.R; then cat R_PROFILE.R; fi; \ echo "invisible(.libPaths(c(\"${lib}\", .libPaths()))); .getRequiredPackages(); tools:::makeLazyLoading(\"${R_PACKAGE_NAME}\", \"${lib}\")") | \ R_DEFAULT_PACKAGES= LC_ALL=C "${R_EXE}" --vanilla --slave if test ${?} -ne 0; then error "lazy loading failed for package '${pkg_name}'" do_exit_on_error fi rm -f ${R_PACKAGE_DIR}/R/all.rda if test -s install.R; then cat install.R >> "${R_PACKAGE_DIR}/R/${R_PACKAGE_NAME}" fi fi if test -d man; then message "help" ## Install man sources ... echo "tools:::.install_package_man_sources('.', '${R_PACKAGE_DIR}')" | \ R_DEFAULT_PACKAGES=NULL LC_ALL=C "${R_EXE}" --vanilla --slave > /dev/null if test ${?} -ne 0; then error "installing man sources failed" do_exit_on_error fi chmod 644 "${R_PACKAGE_DIR}/man/${pkg_name}.Rd.gz" ## Maybe build preformatted help pages ... if ${build_help}; then if ${NO_PERL5}; then echo "${NO_PERL5_MSG}" else if ${debug}; then echo "DEBUG: build-help ${build_help_opts} ${pkg_dir} ${lib} ${R_PACKAGE_DIR} ${pkg_name}" fi "${R_CMD}" perl "${R_SHARE_DIR}/perl/build-help.pl" \ ${build_help_opts} \ "${pkg_dir}" "${lib}" "${R_PACKAGE_DIR}" "${pkg_name}" if test ${?} -ne 0; then error "building help failed for package '${pkg_name}'" do_exit_on_error fi fi if test -n "${use_zip_help}" \ && test -n "${R_UNZIPCMD}" \ && test -n "${R_ZIPCMD}"; then (cd "${R_PACKAGE_DIR}" if test -d R-ex; then (cd R-ex; ${R_ZIPCMD} -q -m Rex *.R) fi if test -d help; then (cd help; ${R_ZIPCMD} -q -m Rhelp * -x AnIndex); fi if test -d latex; then (cd latex; ${R_ZIPCMD} -q -m Rhelp *.tex) fi) fi fi else echo "No man pages found in package '${pkg_name}'" fi message "building package indices ..." echo "invisible(.libPaths(c(\"${lib}\", .libPaths()))); tools:::.install_package_indices(\".\", \"${R_PACKAGE_DIR}\")" | \ R_DEFAULT_PACKAGES=NULL LC_ALL=C "${R_EXE}" --vanilla >/dev/null if test ${?} -ne 0; then error "installing package indices failed" do_exit_on_error fi ## Install a dump of the parsed NAMESPACE file if test -f NAMESPACE && test "${fake}" != "true"; then echo "tools:::.install_package_namespace_info(\".\", \"${R_PACKAGE_DIR}\")" | \ R_DEFAULT_PACKAGES=NULL LC_ALL=C "${R_EXE}" --vanilla >/dev/null if test ${?} -ne 0; then error "installing namespace metadata failed" do_exit_on_error fi fi fi ## ${more_than_libs} ## ## Remove stuff we should not have installed in the first place. ## When installing from a source directory under version control, we ## should really exclude the subdirs CVS, .svn (Subversion) and ## .arch-ids (arch). for d in CVS .svn .arch-ids; do find "${R_PACKAGE_DIR}" -name ${d} -type d -prune \ -exec rm -rf \{\} \; 2>/dev/null done ## if ${clean}; then if test -d src; then cd src if test -f Makefile; then ${MAKE} clean else rm -rf .libs _libs rm -f *.o *@SHLIB_EXT@ fi cd .. fi if test -x ./cleanup ; then ./cleanup fi fi ## now repackage as a tarball if requested if ${tar_up} ; then version=`get_dcf_field Version DESCRIPTION` ## R_PLATFORM is set by R CMD filename="${R_PACKAGE_NAME}_${version}_R_${R_PLATFORM}.tar" filepath="${startdir}/$filename" ${TAR} -chf "$filepath" -C "${R_LIBRARY_DIR}" ${R_PACKAGE_NAME} ${R_GZIPCMD} -9f "$filepath" echo "packaged installation of '${R_PACKAGE_NAME}' as ${filename}.gz" fi stars="*" } ### ### Install a package. do_install () { cd "${1}" pkg_dir="${1}" pkg_name=`get_dcf_field Package DESCRIPTION` ## (The basename of ${pkg_dir} might be different from ${pkg_name}, ## e.g., when building Debian packages from R packages.) if test -z "${pkg_name}"; then error "no 'Package' field in 'DESCRIPTION'" do_exit_on_error no fi ## Set R_PACKAGE_DIR here at the top level. If a version is being ## specified, tack that on. version="" if ${with_package_versions}; then version=`get_dcf_field Version DESCRIPTION` if test -z "${version}"; then error "no 'Version' field in 'DESCRIPTION'" do_exit_on_error no fi R_PACKAGE_NAME="${pkg_name}_${version}" R_PACKAGE_DIR="${lib}/${pkg_name}_${version}" else R_PACKAGE_NAME="${pkg_name}" R_PACKAGE_DIR="${lib}/${pkg_name}" fi export R_PACKAGE_DIR export R_PACKAGE_NAME depends=`get_dcf_field Depends DESCRIPTION` depends=`echo "${depends}" | grep 'R *('` if test "${depends}"; then depends=`echo "${depends}" | ${SED} 's/.*R *(\([^)]*\)).*/\1/;s/=/= /'` dep_operator=`set - ${depends}; echo ${1}` dep_version=`set - ${depends}; echo ${2}` ## Currently, only operators '<=' and '>=' are supported. Hence we ## check this, and also whether we found a version string. ## This thinks 1.9.1 > 1.10.0 if (test "${dep_operator}" = "<=" \ || test "${dep_operator}" = ">=") \ && test -n "${dep_version}"; then dep_ok=`expr ${R_VERSION} ${dep_operator} ${dep_version} ` if test ${dep_ok} -eq 0; then error "This R is version ${R_VERSION}" echo " package '${pkg_name}' needs R ${dep_operator} ${dep_version}" >&2 do_exit_on_error fi else warning "malformed 'Depends' field in 'DESCRIPTION'" fi fi ${MKDIR_P} "${R_PACKAGE_DIR}" || do_exit_on_error no ## Make sure we do not attempt installing to srcdir. if test "`cd \"${R_PACKAGE_DIR}\" && ${GETWD}`" = "`${GETWD}`"; then error "cannot install to srcdir" do_exit_on_error no fi ## Figure out whether this is a source or binary package. if grep "^Built:" DESCRIPTION >/dev/null ; then ## If DESCRIPTION has a @samp{Built:} entry this is a binary ## package. This is the right test, but not available for packages ## installed prior to 1.4.0 -- but 2.0.0 requires packages to be ## reinstalled. is_source_package=false else is_source_package=true fi test "${is_first_package}" = no && echo if ${is_source_package}; then ## This is a source package ... hopefully. do_install_source \ "${pkg_name}" "${R_PACKAGE_DIR}" "${R_PACKAGE_NAME}" "${pkg_dir}" else ## This is a binary package ... hopefully. do_install_binary \ "${pkg_name}" "${R_PACKAGE_DIR}" "${R_PACKAGE_NAME}" fi find "${R_PACKAGE_DIR}" -exec chmod a+r \{\} \; message "DONE (${pkg_name})" is_first_package=no } ### ### Exit and cleanup. do_exit_on_error () { remove_R_package_dir=${1-yes} ## If we are not yet processing a package, we will not have ## set pkg_dir. It's the first thing in do_install. if test -n "${pkg_dir}"; then ## Find out if this is a bundle. If we are installing multiple ## 'packages' the existing bundlepkg is unreliable. bundlepkg=`get_dcf_field Contains "${pkg_dir}/DESCRIPTION"` if test -z "${bundlepkg}"; then bundlepkg=${pkg_name} fi for p in ${bundlepkg}; do if ${with_package_versions}; then p=${p}_${version} fi pkgdir="${lib}/$p" if test "${remove_R_package_dir}" = yes && test -n "${pkgdir}"; then message "Removing '${pkgdir}'" rm -rf "${pkgdir}" fi if test -n "$p" \ && test -d "${lockdir}/$p"; then message "Restoring previous '${pkgdir}'" mv "${lockdir}/$p" "${pkgdir}" fi done fi do_cleanup exit 1 } do_cleanup () { do_cleanup_tmpdir if test "${is_first_package}" = no; then ## Only need to do this in case we successfully installed at least ## *one* package ... well not so sure for bundles. cp "${R_DOC_DIR}/html/R.css" "${lib}" chmod 644 "${lib}/R.css" if test "${lib}" = "`cd \"${R_HOME}/library\" && ${GETWD}`"; then cat "${R_HOME}"/library/*/CONTENTS \ > "${R_DOC_DIR}"/html/search/index.txt if ${build_help} && test "${NO_PERL5}" = "false"; then echo "tools:::unix.packages.html(.Library, docdir=\"${R_DOC_DIR}\")" | \ R_DEFAULT_PACKAGES=NULL LC_COLLATE=C "${R_EXE}" --vanilla >/dev/null fi fi fi if ${lock}; then rm -rf "${lockdir}" fi } ### ### Main loop. if ${debug} ; then echo "'Rcmd INSTALL': now doing 'eval ... do_install':" fi eval "for pkg in ${pkgs}; do do_install \"\${pkg}\"; done" do_cleanup ### Local Variables: *** ### mode: sh *** ### sh-indentation: 2 *** ### End: ***