R Under development (unstable) (2011-08-04 r56618) Copyright (C) 2011 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: i386-apple-darwin9.8.0/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(parallel) > > library(boot) > cd4.rg <- function(data, mle) MASS::mvrnorm(nrow(data), mle$m, mle$v) > cd4.mle <- list(m = colMeans(cd4), v = var(cd4)) > mc <- getOption("mc.cores", 2) > run1 <- function(...) boot(cd4, corr, R = 500, sim = "parametric", + ran.gen = cd4.rg, mle = cd4.mle) > ## To make this reproducible: > set.seed(123, "L'Ecuyer"); mc.reset.stream() > res <- mclapply(seq_len(mc), run1) > cd4.boot <- do.call(c, res) > boot.ci(cd4.boot, type = c("norm", "basic", "perc"), + conf = 0.9, h = atanh, hinv = tanh) BOOTSTRAP CONFIDENCE INTERVAL CALCULATIONS Based on 1000 bootstrap replicates CALL : boot.ci(boot.out = cd4.boot, conf = 0.9, type = c("norm", "basic", "perc"), h = atanh, hinv = tanh) Intervals : Level Normal Basic Percentile 90% ( 0.4610, 0.8577 ) ( 0.4617, 0.8577 ) ( 0.4959, 0.8690 ) Calculations on Transformed Scale; Intervals on Original Scale > > proc.time() user system elapsed 1.838 0.278 9.055