useDynLib(stats) # exportPattern("^[^\\.]") export(.checkMFClasses, .getXlevels, .MFclass) export(add.scope, add1, addmargins, aggregate, aggregate.data.frame, aggregate.default, aggregate.ts, AIC, alias, anova, anova.glm, anova.glmlist, anova.lm, anova.lmlist, anova.mlm, aov, approx, approxfun, as.formula, as.ts, ave, binomial, bw.bcv, bw.nrd, bw.nrd0, bw.SJ, bw.ucv, C, case.names, cbind.ts, coef, coefficients, complete.cases, confint, confint.default, constrOptim, contr.SAS, contr.helmert, contr.poly, contr.sum, contr.treatment, contrasts, "contrasts<-", convolve, cooks.distance, cor, cov, cov.wt, cov2cor, covratio, cycle, D, dbeta, dbinom, dcauchy, dchisq, delete.response, deltat, density, deriv, deriv.default, deriv.formula, deriv3, deriv3.default, deriv3.formula, deviance, dexp, df, df.residual, dfbeta, dfbetas, dffits, dgamma, dgeom, dhyper, diff.ts, dlnorm, dlogis, dmultinom, dnbinom, dnorm, dpois, drop.scope, drop.terms, drop1, dsignrank, dt, dummy.coef, dunif, dweibull, dwilcox, eff.aovlist, effects, estVar, end, expand.model.frame, extractAIC, factor.scope, family, fft, fitted, fitted.values, fivenum, formula, frequency, ftable, Gamma, gaussian, glm, glm.control, glm.fit, hasTsp, hat, hatvalues, hatvalues.lm, influence, influence.measures, integrate, interaction.plot, inverse.gaussian, IQR, is.empty.model, is.mts, is.ts, lines.ts, lm, lm.fit, lm.influence, lm.wfit, logLik, loglin, lowess, ls.diag, ls.print, lsfit, mad, mahalanobis, make.link, makepredictcall, manova, mauchley.test, median, model.extract, model.frame, model.frame.aovlist, model.frame.default, model.frame.glm, model.frame.lm, model.matrix, model.matrix.default, model.matrix.lm, model.offset, model.response, model.tables, model.weights, mvfft, na.action, na.exclude, na.fail, na.omit, na.pass, napredict, naprint, naresid, nextn, nlm, offset, optim, optimise, optimize, p.adjust, p.adjust.methods, pbeta, pbinom, pcauchy, pchisq, pexp, pf, pgamma, pgeom, phyper, plnorm, plogis, plot.density, plot.lm, plot.mlm, plot.ts, plot.TukeyHSD, pnbinom, pnorm, poisson, poly, polym, power, ppoints, ppois, predict, predict.glm, predict.lm, predict.mlm, predict.poly, preplot, printCoefmat, print.anova, print.density, print.family, print.formula, print.ftable, print.glm, print.infl, print.integrate, print.lm, print.logLik, print.terms, print.ts, profile, proj, psignrank, pt, ptukey, punif, pweibull, pwilcox, qbeta, qbinom, qcauchy, qchisq, qexp, qf, qgamma, qgeom, qhyper, qlnorm, qlogis, qnbinom, qnorm, qpois, qqline, qqnorm, qqnorm.default, qqplot, qsignrank, qt, qtukey, quantile, quantile.default, quasi, quasibinomial, quasipoisson, qunif, qweibull, qwilcox, rbeta, rbinom, rcauchy, rchisq, read.ftable, reformulate, relevel, replications, reshape, resid, residuals, residuals.default, residuals.glm, residuals.lm, rexp, rf, rgamma, rgeom, rhyper, rlnorm, rlogis, rmultinom, rnbinom, rnorm, rpois, rsignrank, rstandard, rstandard.glm, rstandard.lm, rstudent, rstudent.glm, rstudent.lm, rt, runif, rweibull, rwilcox, sd, se.contrast, spline, splinefun, SSD, start, stat.anova, step, summary.aov, summary.aovlist, summary.glm, summary.infl, summary.lm, summary.manova, summary.mlm, symnum, termplot, terms, terms.aovlist, terms.default, terms.formula, terms.terms, time, ts, tsp, "tsp<-", TukeyHSD, TukeyHSD.aov, uniroot, update, update.default, update.formula, var, variable.names, vcov, weighted.mean, weighted.residuals, weights, window, "window<-", write.ftable, xtabs, pbirthday, qbirthday) import(graphics) importFrom(grDevices, dev.interactive, palette) importFrom(utils, str) ## register all the methods for generics elsewhere in case namespace is ## loaded but not currently attached. S3method("[", acf) S3method("[", formula) S3method("[", terms) S3method("[", ts) S3method(add1, default) S3method(add1, glm) S3method(add1, lm) S3method(add1, mlm) S3method(AIC, default) S3method(AIC, logLik) S3method(alias, formula) S3method(alias, lm) S3method(as.data.frame, logLik) S3method(as.table, ftable) S3method(as.ts, default) S3method(case.names, default) S3method(case.names, lm) S3method(coef, aov) S3method(coef, default) S3method(coef, listof) S3method(coef, summary.nls) S3method(confint, default) S3method(confint, glm) S3method(confint, lm) S3method(confint, nls) S3method(cooks.distance, glm) S3method(cooks.distance, lm) S3method(cycle, default) S3method(cycle, ts) S3method(deltat, default) S3method(deviance, default) S3method(deviance, glm) S3method(deviance, lm) S3method(deviance, mlm) S3method(df.residual, default) S3method(dfbeta, lm) S3method(dfbetas, lm) S3method(drop1, default) S3method(drop1, glm) S3method(drop1, lm) S3method(drop1, mlm) S3method(dummy.coef, aovlist) S3method(dummy.coef, lm) S3method(effects, glm) S3method(effects, lm) S3method(end, default) S3method(estVar, SSD) S3method(estVar, mlm) S3method(extractAIC, aov) S3method(extractAIC, coxph) S3method(extractAIC, glm) S3method(extractAIC, lm) S3method(extractAIC, negbin) S3method(extractAIC, survreg) S3method(family, glm) S3method(family, lm) S3method(fitted, default) S3method(formula, data.frame) S3method(formula, default) S3method(formula, formula) S3method(formula, glm) S3method(formula, lm) S3method(formula, terms) S3method(frequency, default) S3method(ftable, default) S3method(ftable, formula) S3method(influence, glm) S3method(influence, lm) S3method(labels, lm) S3method(labels, terms) S3method(logLik, glm) S3method(logLik, lm) S3method(makepredictcall, default) S3method(makepredictcall, poly) S3method(mauchley.test, SSD) S3method(mauchley.test, mlm) S3method(model.tables, aov) S3method(model.tables, aovlist) S3method(na.action, default) S3method(na.contiguous, default) S3method(na.exclude, data.frame) S3method(na.exclude, default) S3method(na.fail, default) S3method(na.omit, data.frame) S3method(na.omit, default) S3method(na.omit, ts) S3method(napredict, default) S3method(napredict, exclude) S3method(naprint, default) S3method(naprint, exclude) S3method(naprint, omit) S3method(naresid, default) S3method(naresid, exclude) S3method(Ops, ts) S3method(plot, density) S3method(plot, lm) S3method(plot, mlm) S3method(plot, ts) S3method(plot, TukeyHSD) S3method(predict, glm) S3method(predict, lm) S3method(predict, mlm) S3method(predict, poly) S3method(print, acf) S3method(print, anova) S3method(print, aov) S3method(print, aovlist) S3method(print, density) S3method(print, dummy_coef) S3method(print, dummy_coef_list) S3method(print, family) S3method(print, formula) S3method(print, ftable) S3method(print, glm) S3method(print, htest) S3method(print, infl) S3method(print, integrate) S3method(print, kmeans) S3method(print, lm) S3method(print, logLik) S3method(print, mtable) S3method(print, pairwise.htest) S3method(print, power.htest) S3method(print, summary.aov) S3method(print, summary.aovlist) S3method(print, summary.glm) S3method(print, summary.lm) S3method(print, summary.manova) S3method(print, tables_aov) S3method(print, TukeyHSD) S3method(print, terms) S3method(print, ts) S3method(print, xtabs) S3method(proj, aov) S3method(proj, aovlist) S3method(proj, default) S3method(proj, lm) S3method(quantile, default) S3method(relevel, default) S3method(relevel, factor) S3method(relevel, ordered) S3method(reorder, factor) S3method(se.contrast, aov) S3method(se.contrast, aovlist) S3method(summary, aov) S3method(summary, aovlist) S3method(summary, glm) S3method(summary, infl) S3method(summary, lm) S3method(summary, manova) S3method(summary, mlm) S3method(SSD, mlm) S3method(start, default) S3method(str, logLik) S3method(t, ts) S3method(time, default) S3method(time, ts) S3method(TukeyHSD, aov) S3method(update, default) S3method(update, formula) S3method(variable.names, default) S3method(variable.names, lm) S3method(vcov, glm) S3method(vcov, gls) S3method(vcov, lm) S3method(vcov, mlm) S3method(vcov, lme) S3method(weights, default) S3method(weights, glm) S3method(window, default) S3method(window, ts) S3method("window<-", ts) ## from ctest exportPattern("\\.test$") export(pairwise.table) # documented but not exported # export(print.power.htest) S3method(ansari.test, default) S3method(ansari.test, formula) S3method(bartlett.test, default) S3method(bartlett.test, formula) S3method(cor.test, default) S3method(cor.test, formula) S3method(fligner.test, default) S3method(fligner.test, formula) S3method(friedman.test, default) S3method(friedman.test, formula) S3method(kruskal.test, default) S3method(kruskal.test, formula) S3method(mood.test, default) S3method(mood.test, formula) S3method(quade.test, default) S3method(quade.test, formula) S3method(t.test, default) S3method(t.test, formula) S3method(var.test, default) S3method(var.test, formula) S3method(wilcox.test, default) S3method(wilcox.test, formula) ## from eda export(line, medpolish, smooth) S3method(plot, medpolish) S3method(print, medpolish) S3method(print, tukeyline) S3method(print, tukeysmooth) S3method(residuals, tukeyline) S3method(summary, tukeysmooth) ## from modreg export(isoreg, ksmooth, loess, loess.control, loess.smooth, ppr, runmed, scatter.smooth, smooth.spline, smoothEnds, supsmu) # methods which are documented and registered, but not exported # export(plot.isoreg, plot.ppr, # predict.loess, predict.smooth.spline) S3method(anova, loess) S3method(fitted, isoreg) S3method(plot, isoreg) S3method(plot, ppr) S3method(ppr, default) S3method(ppr, formula) S3method(predict, loess) S3method(predict, ppr) S3method(predict, smooth.spline) S3method(predict, smooth.spline.fit) S3method(print, isoreg) S3method(print, loess) S3method(print, ppr) S3method(print, smooth.spline) S3method(print, summary.loess) S3method(print, summary.ppr) S3method(residuals, isoreg) S3method(summary, loess) S3method(summary, ppr) ## from mva export(as.dist, as.hclust, biplot, cancor, cmdscale, cophenetic, cutree, dist, factanal, hclust, kmeans, loadings, plclust, prcomp, princomp, promax, rect.hclust, screeplot, varimax) ## dendro* export(as.dendrogram, dendrapply, heatmap, is.leaf, order.dendrogram, reorder) ## methods which are documented but not exported ## export(as.hclust.default, as.matrix.dist, ## biplot.princomp, cut.dendrogram, ## identify.hclust, plot.dendrogram, plot.hclust, ## print.dist, print.factanal, ## print.loadings, print.summary.princomp, str.dendrogram, ## summary.princomp) S3method("[[", dendrogram) S3method(as.dendrogram, hclust) S3method(as.hclust, default) S3method(as.hclust, twins) S3method(as.matrix, dist) S3method(biplot, default) S3method(biplot, princomp) S3method(biplot, prcomp) S3method(cut, dendrogram) S3method(format, dist) S3method(identify, hclust) S3method(labels, dendrogram) S3method(plot, dendrogram) S3method(plot, hclust) S3method(plot, prcomp) S3method(plot, princomp) S3method(predict, prcomp) S3method(predict, princomp) S3method(prcomp, default) S3method(prcomp, formula) S3method(princomp, default) S3method(princomp, formula) S3method(print, dendrogram) S3method(print, dist) S3method(print, factanal) S3method(print, hclust) S3method(print, loadings) S3method(print, prcomp) S3method(print, princomp) S3method(print, summary.prcomp) S3method(print, summary.princomp) S3method(reorder, dendrogram) S3method(rev, dendrogram) S3method(str, dendrogram) S3method(summary, prcomp) S3method(summary, princomp) ## from nls export(NLSstAsymptotic, NLSstClosestX, NLSstLfAsymptote, NLSstRtAsymptote, SSasymp, SSasympOff, SSasympOrig, SSbiexp, SSfol, SSfpl, SSgompertz, SSlogis, SSmicmen, SSweibull, asOneSidedFormula, clearNames, getInitial, nls, nls.control, nlsModel, numericDeriv, profiler, selfStart, setNames, sortedXyData) # documented but not exported # export(formula.nls, plot.profile.nls, predict.nls, profile.nls, profiler.nls) S3method(NLSstAsymptotic, sortedXyData) S3method(NLSstClosestX, sortedXyData) S3method(NLSstLfAsymptote, sortedXyData) S3method(NLSstRtAsymptote, sortedXyData) S3method(anova, nls) S3method(coef, nls) S3method(deviance, nls) S3method(df.residual, nls) S3method(fitted, nls) S3method(formula, nls) S3method(getInitial, default) S3method(getInitial, formula) S3method(getInitial, selfStart) S3method(logLik, nls) S3method(nlsModel, plinear) S3method(plot, profile.nls) S3method(predict, nls) S3method(print, nls) S3method(print, summary.nls) S3method(profile, nls) S3method(profiler, nls) S3method(residuals, nls) S3method(selfStart, default) S3method(selfStart, formula) S3method(sortedXyData, default) S3method(summary, nls) S3method(vcov, nls) S3method(weights, nls) ## from ts: Box.test and PP.test are covered above. export(acf, acf2AR, ar, ar.burg, ar.mle, ar.ols, ar.yw, arima, arima.sim, arima0, arima0.diag, ARMAacf, ARMAtoMA, bandwidth.kernel, ccf, cpgram, decompose, df.kernel, diffinv, embed, filter, HoltWinters, is.tskernel, KalmanForecast, KalmanLike, KalmanRun, KalmanSmooth, kernapply, kernel, lag, lag.plot, makeARIMA, monthplot, na.contiguous, pacf, plot.spec, plot.spec.coherency, plot.spec.phase, spec.ar, spec.pgram, spec.taper, spectrum, stl, StructTS, toeplitz, ts.intersect, ts.plot, ts.union, tsdiag, tsSmooth) # methods which are documented and registered # export(ar.burg.default, ar.burg.mts, ar.yw.default, ar.yw.mts, # diffinv.default, diffinv.ts, kernapply.default, # kernapply.ts, kernapply.tskernel, kernapply.vector, # lag.default, monthplot.default, monthplot.stl, # monthplot.StructTS, monthplot.ts, pacf.default, # plot.acf, plot.HoltWinters, plot.stl, predict.ar, # predict.Arima, predict.arima0, predict.HoltWinters, # tsdiag.Arima, tsdiag.arima0, tsdiag.StructTS, # tsSmooth.StructTS) S3method("[", tskernel) S3method(ar.burg, default) S3method(ar.burg, mts) S3method(ar.yw, default) S3method(ar.yw, mts) S3method(coef, Arima) S3method(diffinv, default) S3method(diffinv, ts) S3method(diffinv, vector) S3method(kernapply, default) S3method(kernapply, ts) S3method(kernapply, tskernel) S3method(kernapply, vector) S3method(lag, default) S3method(logLik, Arima) S3method(monthplot, default) S3method(monthplot, stl) S3method(monthplot, StructTS) S3method(monthplot, ts) S3method(pacf, default) S3method(plot, acf) S3method(plot, decomposed.ts) S3method(plot, HoltWinters) S3method(plot, spec) S3method(plot, stl) S3method(plot, tskernel) S3method(predict, ar) S3method(predict, Arima) S3method(predict, arima0) S3method(predict, HoltWinters) S3method(predict, StructTS) S3method(print, ar) S3method(print, Arima) S3method(print, arima0) S3method(print, HoltWinters) S3method(print, stl) S3method(print, StructTS) S3method(print, tskernel) S3method(residuals, HoltWinters) S3method(summary, stl) S3method(tsdiag, Arima) S3method(tsdiag, arima0) S3method(tsdiag, StructTS) S3method(tsSmooth, StructTS) S3method(vcov, Arima) ## from stepfun export(as.stepfun, ecdf, is.stepfun, knots, plot.ecdf, plot.stepfun, stepfun, summary.stepfun) ## the examples call plot.* summary.stepfun directly ... S3method(as.stepfun, default) S3method(as.stepfun, isoreg) S3method(knots, stepfun) S3method(lines, stepfun) S3method(plot, ecdf) S3method(plot, stepfun) S3method(print, ecdf) S3method(print, stepfun) S3method(summary, ecdf) S3method(summary, stepfun) ## Added after the merge S3method("as.dist", "default") S3method("cophenetic", "default") S3method("cophenetic", "dendrogram")