#! /bin/sh # # ${R_HOME}/bin/INSTALL for installing add-on packages # @configure_input@ revision='$Revision: 1.88 $' version=`set - ${revision}; echo ${2}` version="R add-on package installer ${version} Copyright (C) 2000-2002 The R Core Development Team. This is free software; see the GNU General Public Licence version 2 or later for copying conditions. There is NO warranty." usage="Usage: R CMD INSTALL [options] pkgs Install the add-on packages specified by pkgs. The elements of pkgs can be relative or absolute paths to directories with the package (bundle) sources, or to gzipped package 'tar' archives. The library tree to install to can be specified via '--library'. By default, packages are installed in the library tree rooted at the first directory given in the environment variable R_LIBS if this is set and non-null, and into the default R library tree (${R_HOME}/library) otherwise. Options: -h, --help print short help message and exit -v, --version print version info and exit --configure-args=ARGS set args for package's configure script (if any) --configure-vars=VARS set variables for the configure script (if any) -c, --clean remove all files created during installation -s, --save[=ARGS] save the package source as an image file, and arrange for this file to be loaded when the package is attached; if given, ARGS are passed to R when creating the save image --no-save do not save the package source as an image file -d, --debug turn on shell and build-help debugging -l, --library=LIB install packages to library tree LIB --no-configure do not use the package's configure script --no-docs do not build and install documentation --use-zip-data collect data files in zip archive --use-zip-help collect help and examples into zip archives --use-zip combine '--use-zip-data' and '--use-zip-help' Report bugs to ." ## ## This is a *shell* script. ## According to the R Coding Standards (see R-exts), Perl can be assumed ## for *source*, but not for *binary* installations. ## umask 022 R_VERSION='@VERSION@' GETWD='@GETWD@' MAKE=${MAKE-'@MAKE@'} NO_PERL5=@NO_PERL5@ NO_PERL5_MSG="\ *** Formatting and installing R help pages needs Perl version 5, which *** does not seem to be installed on your system or is not in your path. *** Please install either Perl 5 on your system and re-configure R or *** get the PDF reference manual from the nearest CRAN server. *** The CRAN master site can be found at *** http://cran.r-project.org/" tmpdir="${TMPDIR-/tmp}/R.INSTALL.$$" : ${R_OSTYPE=unix} ## ## Unix only ... but Windows has INSTALL as a Perl script. R_EXE="${R_HOME}/bin/R" ## ## ## It might make sense to abstract error and warnings into functions ## like ## warning () { echo "WARNING: $*" } ## error () { echo "ERROR: $*" } ## and maybe even redirect this to stderr on Unix. ## ## ## This could be made a bit more general: if R CMD INSTALL is run by ## another tool (e.g., when building or checking a package, its messages ## should be a section level deeper (at least). So we could have an ## argument to set the initial secnumdepth (0 by default), and work ## against this ... message () { echo "${stars} $*"; } stars="*" ## . "${R_HOME}/share/sh/dcf.sh" # get_dcf_field() get_packages () { ## get the full path names to all packages contained in $1. ## NOTE: modifies pkgs! if grep -s "^Contains:" "${1}/DESCRIPTION"; then bundlepkg=`get_dcf_field Contains "${1}/DESCRIPTION"` for p in ${bundlepkg}; do pkgs="${pkgs} \"`cd "${1}/${p}" && ${GETWD}`\"" if test -f "${1}/${p}/DESCRIPTION.in"; then cat "${1}/${p}/DESCRIPTION.in" > "${1}/${p}/DESCRIPTION" grep -v "^Contains:" "${1}/DESCRIPTION" >> "${1}/${p}/DESCRIPTION" fi done else pkgs="${pkgs} \"`cd "${1}" && ${GETWD}`\"" fi } ## ## Using ${VAR:-value} is not portable shell programming. ## But we cannot simply use ${VAR-value}: see the usage info. lib=`echo ${R_LIBS:-"${R_HOME}/library"} | cut -f1 -d:` ## pkgs= clean=false debug=false error=false build_text=true build_html=true build_latex=true build_example=true build_help=true build_help_opts= use_configure=true use_zip_data= use_zip_help= configure_args= configure_vars= save="CHECK" save_args="--no-site-file --no-init-file"; while test -n "${1}"; do case ${1} in -h|--help) echo "${usage}"; exit 0 ;; -v|--version) echo "${version}"; exit 0 ;; -c|--clean) clean=true ;; -s|--save) save=true;; --save=*) save_args=`echo "${1}" | sed -e 's/[^=]*=//'` ;; --no-save) save=false ;; -d|--debug) debug=true ;; --no-configure) use_configure=false ;; --no-docs) build_text=false build_html=false build_latex=false build_example=false ;; --no-text) build_text=false ;; --no-html) build_html=false ;; --no-latex) build_latex=false ;; --no-example) build_example=false ;; --use-zip) use_zip_data=true use_zip_help=true ;; --use-zip-data) use_zip_data=true ;; --use-zip-help) use_zip_help=true ;; -l|--library) lib="${2}"; shift ;; --library=*) lib=`echo "${1}" | sed -e 's/[^=]*=//'` ;; --configure-args=*) configure_args=`echo "${1}" | sed -e 's/[^=]*=//'` ;; --configure-vars=*) configure_vars=`echo "${1}" | sed -e 's/[^=]*=//'` ;; *) if test -f "${1}"; then mkdir -p ${tmpdir} pkgname=`basename "${1}"` pkgname=`echo "${pkgname}" | sed 's/_.*//'` gzip -dc "${1}" | (cd "${tmpdir}" && tar -xf -) if test -d "${tmpdir}/${pkgname}"; then get_packages "${tmpdir}/${pkgname}" else echo "ERROR: cannot extract package from '${1}'" exit 1 fi elif test -d "${1}"; then get_packages "${1}" else echo "WARNING: package '${1}' does not exist" fi ;; esac shift done if test -z "${pkgs}"; then echo "ERROR: no packages specified" exit 1 fi if test -d "${lib}" -a -w "${lib}" || mkdir "${lib}" 2> /dev/null; then lib=`cd "${lib}" && ${GETWD}` else echo "ERROR: cannot write to or create directory '${lib}'" exit 2 fi if ${build_text}; then build_help_opts="${build_help_opts} --txt" fi if ${build_html}; then build_help_opts="${build_help_opts} --html" fi if ${build_latex}; then build_help_opts="${build_help_opts} --latex" fi if ${build_example}; then build_help_opts="${build_help_opts} --example" fi if test -z "${build_help_opts}"; then build_help=false elif ${debug}; then build_help_opts="--debug ${build_help_opts}" fi do_install () { cd "${1}" pkg=`basename "${1}"` depends=`get_dcf_field Depends DESCRIPTION` depends=`echo "${depends}" | grep 'R *('` if test "${depends}"; then depends=`echo "${depends}" | sed 's/.*R *(\([^)]*\)).*/\1/;s/=/= /'` dep_operator=`set - ${depends}; echo ${1}` dep_version=`set - ${depends}; echo ${2}` ## Currently, only operators `<=' and `>=' are supported. Hence we ## check this, and also whether we found a version string. if (test "${dep_operator}" = "<=" \ || test "${dep_operator}" = ">=") \ && test -n "${dep_version}"; then dep_ok=`expr ${R_VERSION} ${dep_operator} ${dep_version} ` if test ${dep_ok} -eq 0; then echo "ERROR: This R is version ${R_VERSION}" echo " package '${pkg}' depends on R ${dep_version}" exit 1; fi else echo "WARNING: malformed 'Depends' field in 'DESCRIPTION'" fi fi mkdir -p "${lib}/${pkg}" || exit 2 ## Make sure we do not attempt installing to srcdir. if test "`cd \"${lib}/${pkg}\" && ${GETWD}`" = "`${GETWD}`"; then echo "ERROR: cannot install to srcdir" exit 3 fi ## Figure out whether this is a source or binary package. if grep "^Built:" DESCRIPTION >/dev/null ; then ## If DESCRIPTION has a @samp{Built:} entry this is a binary ## package. This is the right test but available only for recently ## enough installed packages. is_source_package=false elif test -d man; then ## Versions of R prior to 1.4 did not install man pages. Hence ## assuming that source packages would have some documentation ... is_source_package=true else is_source_package=false fi if ${is_source_package}; then ## This is a source package ... hopefully. message "Installing *source* package '${pkg}' ..." stars="**" ## Make the destination directories available to the developer's ## installation scripts (e.g. configure, etc.) R_PACKAGE_DIR="${lib}/${pkg}" R_LIBRARY_DIR="${lib}" R_PACKAGE_NAME="${pkg}" export R_LIBRARY_DIR export R_PACKAGE_DIR export R_PACKAGE_NAME if ${use_configure} && test -x ./configure ; then eval ${configure_vars} ./configure ${configure_args} if test ${?} -ne 0; then echo "ERROR: configuration failed for package '${pkg}'" exit 4 fi fi if test -d src; then message "libs" if ${debug}; then set -x; fi ## ## Is 'mkdir -p' portable? mkdir -p "${lib}/${pkg}/libs" ## if test -f src/Makefile; then cd src; makefiles="-f \"${R_HOME}\"/share/make/shlib.mk -f Makefile" if test -r Makevars; then makefiles="-f Makevars ${makefiles}" fi eval ${MAKE} ${makefiles} \ && cp *@SHLIB_EXT@ "${lib}/${pkg}/libs" \ || error=true; \ if ${clean}; then ${MAKE} clean fi cd .. else cd src; srcs=`ls *.[cfC] *.cc *.cpp 2>/dev/null` if test -n "${srcs}"; then sh "${R_HOME}/bin/SHLIB" -o "${pkg}@SHLIB_EXT@" ${srcs} \ && cp *@SHLIB_EXT@ "${lib}/${pkg}/libs" \ || error=true; \ if ${clean}; then rm -rf .libs _libs rm -f *.o *@SHLIB_EXT@ fi else echo "WARNING: no source files found" fi cd .. fi if ${error}; then echo "ERROR: compilation failed for package '${pkg}'" exit 5 fi if ${debug}; then set +x; fi fi if test -d R; then message "R" Rsrcs=`ls R/*.[RSqrs] R/${R_OSTYPE}/*.[RSqrs] 2>/dev/null` if test -n "${Rsrcs}"; then mkdir -p "${lib}/${pkg}/R" rm -f "${lib}/${pkg}/R/"* cat ${Rsrcs} > "${lib}/${pkg}/R/${pkg}" fi fi if test -d data; then message "data" mkdir -p "${lib}/${pkg}/data" rm -f "${lib}/${pkg}/data/"* cp data/* "${lib}/${pkg}/data" 2>/dev/null chmod 644 "${lib}/${pkg}/data/"* if test -n "${use_zip_data}" \ -a -n "${R_UNZIPCMD}" \ -a -n "${R_ZIPCMD}"; then (cd "${lib}/${pkg}/data"; find . -type f -print > filelist ${R_ZIPCMD} -m Rdata * -x filelist 00Index) fi fi if test -d demo; then message "demo" mkdir -p "${lib}/${pkg}/demo" rm -f "${lib}/${pkg}/demo/"* cp demo/* "${lib}/${pkg}/demo" 2>/dev/null chmod 644 "${lib}/${pkg}/demo/"* fi if test -d exec; then message "exec" mkdir -p "${lib}/${pkg}/exec" rm -f "${lib}/${pkg}/exec/"* cp exec/* "${lib}/${pkg}/exec" 2>/dev/null chmod 755 "${lib}/${pkg}/exec/"* fi if test -d inst; then message "inst" cp -r inst/* "${lib}/${pkg}" fi case ${save} in CHECK) if test -r install.R; then R_SAVE_IMAGE=true; else R_SAVE_IMAGE=false; fi ;; *) R_SAVE_IMAGE=${save} ;; esac export R_SAVE_IMAGE if ${R_SAVE_IMAGE}; then message "save image" ## ## We want R to run as quietly as possible when creating the save ## image. But this is tricky: sending options(echo=FALSE) to R via ## stdin (as opposed to writing to a file and reading from it) ## echoes what we sent before shutting up R, which is not what we ## want. Option '--slave' gets around this but also turns off ## saving ... hence we call R with '--slave --save'. Argh. save_image_defaults="list(compress=TRUE, safe=FALSE)" (echo "options(save.image.defaults=${save_image_defaults})"; \ if test -s R_PROFILE.R; then cat R_PROFILE.R; fi; \ echo "invisible(.libPaths(c(\"${lib}\", .libPaths())))"; \ cat "${lib}/${pkg}/R/${pkg}") | \ ${R_EXE} --slave --save ${save_args} ## if test ${?} -ne 0; then echo "ERROR: execution of package source for '${pkg}' failed" exit 1 fi mv .RData "${lib}/${pkg}/R/all.rda" mv "${lib}/${pkg}/R/${pkg}" "${lib}/${pkg}/R/${pkg}.R" cat "${R_HOME}/share/R/firstlib.R" > "${lib}/${pkg}/R/${pkg}" ## If install.R is non-empty, arrange to evaluate the R code it ## contains after the package source (maybe for some kind of ## cleanup). if test -s install.R; then cat install.R >> "${lib}/${pkg}/R/${pkg}" fi fi for f in COPYING INDEX; do if test -f "${f}"; then cp "${f}" "${lib}/${pkg}"; fi done title=`get_dcf_field Title DESCRIPTION` if test "${title}"; then ${R_CMD} perl "${R_HOME}/share/perl/maketitle.pl" DESCRIPTION \ > "${lib}/${pkg}/TITLE" elif test -f TITLE; then cp TITLE "${lib}/${pkg}" fi ## copy DESCRIPTION file and remove blank lines if test -f DESCRIPTION; then cat DESCRIPTION | sed '/^[ ]*$/d;' \ > "${lib}/${pkg}/DESCRIPTION" fi ## stamp DESCRIPTION with build information echo "Built: R" ${R_VERSION}\; ${R_PLATFORM}\; `date` \ >> "${lib}/${pkg}/DESCRIPTION" if test -d man; then message "help" ## Install man sources ... Rdfiles=`ls man/*.[Rr]d man/${R_OSTYPE}/*.[Rr]d 2>/dev/null` if test -n "${Rdfiles}"; then mkdir -p "${lib}/${pkg}/man" rm -f "${lib}/${pkg}/man/"* cat ${Rdfiles} > "${lib}/${pkg}/man/${pkg}.Rd" chmod 644 "${lib}/${pkg}/man/${pkg}.Rd" fi ## Maybe build preformatted help pages ... if ${build_help}; then if ${NO_PERL5}; then echo "${NO_PERL5_MSG}" else if ${debug}; then echo "DEBUG: build-help ${BUILD_HELP_OPTS} ../${pkg} ${lib}" fi ${R_CMD} perl "${R_HOME}/share/perl/build-help.pl" \ ${build_help_opts} "../${pkg}" "${lib}" if test ${?} -ne 0; then echo "ERROR: building help failed for package '${pkg}'" exit 6 fi ${R_CMD} perl "${R_HOME}/share/perl/Rd2contents.pl" \ --os=${R_OSTYPE} "../${pkg}" > "${lib}/${pkg}/CONTENTS" if test "${lib}" = `cd "${R_HOME}/library" && ${GETWD}`; then ${R_CMD} perl "${R_HOME}/share/perl/build-help.pl" --htmllists cat "${R_HOME}"/library/*/CONTENTS \ > "${R_HOME}"/doc/html/search/index.txt fi fi if test -n "${use_zip_help}" \ -a -n "${R_UNZIPCMD}" \ -a -n "${R_ZIPCMD}"; then cd "${lib}/${pkg}" if test -d R-ex; then (cd R-ex; ${R_ZIPCMD} -m Rex *.R) fi ## NOT YET: ## if test -d latex; then ## (cd latex; ${R_ZIPCMD} -m Rhelp *.tex) ## fi if test -d help; then (cd help; ${R_ZIPCMD} -m Rhelp * -x AnIndex); fi fi fi else echo "No man pages found in package '${pkg}'" fi if ${clean}; then if test -x ./cleanup ; then ./cleanup fi fi stars="*" else ## This is a binary package ... hopefully. message "Installing *binary* package '${pkg}' ..." cp -r . "${lib}/${pkg}" fi chmod -R a+r "${lib}/${pkg}" message "DONE (${pkg})" echo } eval "for pkg in ${pkgs}; do do_install \"\${pkg}\"; done" cp "${R_HOME}/doc/html/R.css" "${lib}" if test -d "${tmpdir}"; then cd / rm -rf "${tmpdir}" fi message "DONE (INSTALL)" ### Local Variables: *** ### mode: sh *** ### sh-indentation: 2 *** ### End: ***