## export functions export( acfplot, HPDinterval, as.array.mcmc.list, as.mcmc, as.mcmc.list, autocorr, ##RGA autocorr.diag, autocorr.plot, ##RGA batchSE, bugs2jags, chanames, coda.options, codamenu, crosscorr, crosscorr.plot, cumuplot, densplot, display.coda.options, effectiveSize, gelman.diag, gelman.plot, geweke.diag, geweke.plot, heidel.diag, is.mcmc, is.mcmc.list, mcmc, mcmc.list, mcmcUpgrade, mcpar, multi.menu, nchain, niter, nvar, pcramer, raftery.diag, read.and.check, read.coda.interactive, read.coda, read.jags, read.openbugs, ##RGA rejectionRate, spectrum0, spectrum0.ar, thin, traceplot, varnames, "varnames<-") ## export data # export(line) # this doesn't need to be exported, not sure why, but it works fine # as is. # [1] [.mcmc as.matrix.mcmc end.mcmc frequency.mcmc plot.mcmc # [6] print.mcmc start.mcmc summary.mcmc thin.mcmc time.mcmc # [11] window.mcmc # [1] [.mcmc.list as.matrix.mcmc.list as.mcmc.mcmc.list # [4] end.mcmc.list plot.mcmc.list start.mcmc.list # [7] summary.mcmc.list thin.mcmc.list time.mcmc.list # [10] window.mcmc.list ## register S3 methods S3method(as.mcmc, default) S3method(as.mcmc.list, default) S3method(as.ts, mcmc) ## as.matrix S3method(as.matrix, mcmc) S3method(as.matrix, mcmc.list) ## mcmc S3method("[", mcmc) S3method(end, mcmc) S3method(frequency, mcmc) S3method(plot, mcmc) S3method(print, mcmc) S3method(start, mcmc) S3method(summary, mcmc) S3method(thin, mcmc) S3method(time, mcmc) S3method(window, mcmc) S3method(head, mcmc) S3method(tail, mcmc) ##RGA S3method(autocorr.diag, mcmc) S3method(rejectionRate, mcmc) S3method(batchSE,mcmc) S3method(as.data.frame,mcmc) ##DMB S3method(HPDinterval, mcmc) ## mcmc.list S3method("[", mcmc.list) S3method(as.matrix, mcmc.list) S3method(as.mcmc, mcmc.list) S3method(as.array, mcmc.list) S3method(end, mcmc.list) S3method(plot, mcmc.list) S3method(start, mcmc.list) S3method(summary, mcmc.list) S3method(thin, mcmc.list) S3method(time, mcmc.list) S3method(window, mcmc.list) S3method(head, mcmc.list) S3method(tail, mcmc.list) ##RGA S3method(autocorr.diag, mcmc.list) S3method(rejectionRate, mcmc.list) S3method(batchSE,mcmc.list) ##DMB S3method(HPDinterval, mcmc.list) ## misc S3method(print, gelman.diag) S3method(print, geweke.diag) S3method(print, heidel.diag) S3method(print, raftery.diag) S3method(print, summary.mcmc) ## Imports importFrom(grDevices, dev.cur, dev.interactive, dev.off, postscript, topo.colors, nclass.Sturges) importFrom(graphics, abline, axis, hist, legend, lines, matplot, par, plot, polygon, text, title, barplot) importFrom(lattice, xyplot, qqmath, densityplot, levelplot, panel.abline, panel.xyplot, trellis.par.get, do.breaks, panel.superpose, prepanel.qqmathline, splom) importFrom(stats, Gamma, IQR, acf, aggregate, ar, as.formula, as.ts, cor, density, end, fft, frequency, glm, lm, lowess, predict, qf, qnorm, quantile, residuals, sd, start, time, ts, var, window) importFrom(utils, head, menu, read.table, tail) ## lattice methods S3method(xyplot, mcmc) S3method(qqmath, mcmc) S3method(densityplot, mcmc) S3method(acfplot, mcmc) S3method(levelplot, mcmc) S3method(xyplot, mcmc.list) S3method(qqmath, mcmc.list) S3method(densityplot, mcmc.list) S3method(acfplot, mcmc.list)