#### Toplevel ``virtual'' class "Matrix" ## probably not needed eventually: setAs(from = "ddenseMatrix", to = "matrix", function(from) { if(length(d <- dim(from)) != 2) stop("dim(.) has not length 2") array(from@x, dim = d, dimnames = dimnames(from)) }) ## private function to be used as show() method possibly more than once prMatrix <- function(object) { d <- dim(object) cl <- class(object) cat(sprintf('%d x %d Matrix of class "%s"\n', d[1], d[2], cl)) m <- as(object, "matrix") maxp <- getOption("max.print") if(prod(d) <= maxp) print(m) else { ## d[1] > maxp / d[2] >= nr : nr <- maxp %/% d[2] n2 <- ceiling(nr / 2) print(head(m, max(1, n2))) cat("\n ..........\n\n") print(tail(m, max(1, nr - n2))) } ## DEBUG: cat("str(.):\n") ; str(object) invisible(object)# as print() S3 methods do } setMethod("show", signature(object = "ddenseMatrix"), prMatrix) ##- ## FIXME: The following is only for the "dMatrix" objects that are not ##- ## "dense" nor "sparse" -- i.e. "packed" ones : ##- ## But these could be printed better -- "." for structural zeros. ##- setMethod("show", signature(object = "dMatrix"), prMatrix) ##- ## and improve this as well: ##- setMethod("show", signature(object = "pMatrix"), prMatrix) ##- ## this should now be superfluous [keep for safety for the moment]: setMethod("show", signature(object = "Matrix"), prMatrix) ## should propagate to all subclasses: setMethod("as.matrix", signature(x = "Matrix"), function(x) as(x, "matrix")) setMethod("dim", signature(x = "Matrix"), function(x) x@Dim, valueClass = "integer") setMethod("dimnames", signature(x = "Matrix"), function(x) x@Dimnames) ## not exported but used more than once for "dimnames<-" method : ## -- or do only once for all "Matrix" classes ?? dimnamesGets <- function (x, value) { d <- dim(x) if (!is.list(value) || length(value) != 2 || !(is.null(v1 <- value[[1]]) || length(v1) == d[1]) || !(is.null(v2 <- value[[2]]) || length(v2) == d[2])) stop(sprintf("invalid dimnames given for '%s' object", class(x))) x@Dimnames <- list(if(!is.null(v1)) as.character(v1), if(!is.null(v2)) as.character(v2)) x } setMethod("dimnames<-", signature(x = "Matrix", value = "list"), dimnamesGets) setMethod("unname", signature("Matrix", force="missing"), function(obj) { obj@Dimnames <- list(NULL,NULL); obj}) Matrix <- function (data = NA, nrow = 1, ncol = 1, byrow = FALSE, dimnames = NULL) { if (is(data, "Matrix")) return(data) if (is.matrix(data)) { val <- data } else { ## cut & paste from "base::matrix" : if (missing(nrow)) nrow <- ceiling(length(data)/ncol) else if (missing(ncol)) ncol <- ceiling(length(data)/nrow) val <- .Internal(matrix(data, nrow, ncol, byrow)) dimnames(val) <- dimnames } as(val, "dgeMatrix") } ## Methods for operations where one argument is numeric ## Using as.matrix() and rbind() ## in order to get dimnames from names {at least potentially}: setMethod("%*%", signature(x = "Matrix", y = "numeric"), function(x, y) callGeneric(x, as.matrix(y))) setMethod("%*%", signature(x = "numeric", y = "Matrix"), function(x, y) callGeneric(rbind(x), y)) setMethod("crossprod", signature(x = "Matrix", y = "numeric"), function(x, y = NULL) callGeneric(x, as.matrix(y))) setMethod("crossprod", signature(x = "numeric", y = "Matrix"), function(x, y = NULL) callGeneric(rbind(x), y)) setMethod("solve", signature(a = "Matrix", b = "numeric"), function(a, b, ...) callGeneric(a, as.matrix(b)))