## tests of fix for PR#9831 library(nlme) val <- c("10"=1.10,"14"=1.14) vf <- varIdent(value=val, form=~1|age, fixed=c("12"=1.12)) vfi <- Initialize(vf,Orthodont) vfi str(vfi) stopifnot( all.equal(coef(vfi), c(0.0953101798043, 0.131028262406)), all.equal(coef(vfi, unconstrained = FALSE, allCoef = TRUE), c("8" = 1, "10" = 1.1, "14" = 1.14, "12" = 1.12))) vfiCopy <- vfi # copy of an initialized object length(vfiCopy) # length is 2 coef(vfiCopy) <- c(11,12) # error in 3.1-84 stopifnot(identical(coef(vfiCopy), c(11,12))) ## error in 3.1-84 (gls. <- gls(distance ~ age, weights = vfi, data=Orthodont))