# SCCS @(#)print.coxph.s 4.12 10/29/98 print.coxph <- function(x, digits=max(options()$digits - 4, 3), ...) { if (!is.null(cl<- x$call)) { cat("Call:\n") dput(cl) cat("\n") } if (!is.null(x$fail)) { cat(" Coxph failed.", x$fail, "\n") return() } savedig <- options(digits = digits) on.exit(options(savedig)) coef <- x$coefficients se <- sqrt(diag(x$var)) if(is.null(coef) | is.null(se)) stop("Input is not valid") if (is.null(x$naive.var)) { tmp <- cbind(coef, exp(coef), se, coef/se, signif(1 - pchisq((coef/ se)^2, 1), digits -1)) dimnames(tmp) <- list(names(coef), c("coef", "exp(coef)", "se(coef)", "z", "p")) } else { nse <- sqrt(diag(x$naive.var)) tmp <- cbind(coef, exp(coef), nse, se, coef/se, signif(1 - pchisq((coef/se)^2, 1), digits -1)) dimnames(tmp) <- list(names(coef), c("coef", "exp(coef)", "se(coef)", "robust se", "z", "p")) } cat("\n") prmatrix(tmp) logtest <- -2 * (x$loglik[1] - x$loglik[2]) if (is.null(x$df)) df <- sum(!is.na(coef)) else df <- round(sum(x$df),2) cat("\n") cat("Likelihood ratio test=", format(round(logtest, 2)), " on ", df, " df,", " p=", format(1 - pchisq(logtest, df)), sep="") omit <- x$na.action if (length(omit)) cat(" n=", x$n, " (", naprint(omit), ")\n", sep="") else cat(" n=", x$n, "\n") if (length(x$icc)) cat(" number of clusters=", x$icc[1], " ICC=", format(x$icc[2:3]), "\n") invisible() }