#!/bin/sh
#
# Synchronize incoming BioC packages (1.8 and 1.9) into BIOC.new
# also synchronize CRAN

BASE=/Volumes/Builds/packages
CRANBASE=$BASE/CRAN

#rsync -rtlv --delete 'bioconductor.org::1.8-allsrc/' $BASE/BIOC.new/1.8/
#rsync -rtlv --delete 'bioconductor.org::1.9-allsrc/' $BASE/BIOC.new/1.9/
#rsync -rtlv --delete 'bioconductor.org::2.0-allsrc/' $BASE/BIOC.new/2.0/
#rsync -rtlv --delete 'bioconductor.org::2.1-allsrc/' $BASE/BIOC.new/2.1/
#rsync -rtlv --delete 'bioconductor.org::2.2-allsrc/' $BASE/BIOC.new/2.2/
rsync -av --delete-after --exclude=Archive cran.at.r-project.org::CRAN/src/contrib/ $CRANBASE/src/contrib/

# update description cache
make -C $BASE/CRAN -f ../Makefile.CRAN cache
#make -C $BASE/BIOC.new cache

#rsync -rtlv --delete --exclude bin --exclude vignettes 'bioconductor.org::1.8/' $BASE/BIOC.new/1.8/
#rsync -rtlv --delete --exclude bin --exclude vignettes 'bioconductor.org::1.8-monograph/' $BASE/BIOC.new/1.8/monograph/