#! /bin/csh
~/R/packages/InUse.R ~/R/packages/tests-clang || exit 1

set path=(~/bin /usr/local/bin /usr/local/texbin /usr/sbin $path /usr/lib64/openmpi/bin)
setenv PKG_CONFIG_PATH /usr/local/lib64/pkgconfig:/usr/lib64/pkgconfig

setenv R_LIBS ~/R/test-clang:~/R/test-BioCdata

cd ~/R/packages
Rclang -f reinstall.R

/data/gannet/ripley/R/R-clang/bin/Rscript unavailable.R
env DISPLAY=:5 /data/gannet/ripley/R/R-clang/bin/Rscript updates.R

rm -rf ~/.cache/R/*
cd ~/R/packages
#./check-clang
cd tests-clang
make backup veryclean unpack
./RunScript
echo 'packaging'
make package
echo 'done'