ALDEx2 ALL AffymetrixDataTestFiles AnnotationDbi AnnotationFilter AnnotationForge AnnotationHub ArrayExpress BSgenome BioNet Biobase BiocBaseUtils BiocCheck BiocFileCache BiocGenerics BiocIO BiocNeighbors BiocParallel BiocSingular BiocStyle BiocVersion Biostrings Category ChIPseeker ChemmineR ComplexHeatmap CompoundDb ConsensusClusterPlus DECIPHER DESeq2 DLBCL DNAcopy DOSE DelayedArray DelayedMatrixStats DirichletMultinomial DropletUtils DynDoc EBImage EmpiricalBrownsMethod EnhancedVolcano EpiDISH ExperimentHub GEOmetadb GEOquery GLAD GOSemSim GOstats GSEABase GSVA GWASTools GenomeInfoDb GenomicAlignments GenomicDataCommons GenomicFeatures GenomicInteractions GenomicRanges GlobalAncova Gviz HDF5Array HSMMSingleCell HTSFilter Heatplus HiCDOC HiCParser HiCcompare HiTC IHW IRanges Icens InteractionSet InteractiveComplexHeatmap Iyer517 KEGGREST KEGGdzPathwaysGEO KEGGgraph LEA Linnorm M3C MAST MLInterfaces MOFA2 MOFAdata MassSpecWavelet MatrixGenerics MetaboCoreUtils Mfuzz MsCoreUtils MsExperiment MsFeatures MultiAssayExperiment MultiDataSet Nebulosa OSAT OrganismDbi PADOG PSMatch PTMods Pedixplorer ProData ProtGenerics ProteoMM QFeatures QSutils R4RNA RBGL RCy3 RDRToolbox RNASeqPower ROTS ROntoTools RProtoBufLib RTCGA.rnaseq RTCGA RaggedExperiment Rdisop RedeR ResidualMatrix Rgraphviz Rhdf5lib Rhtslib Rigraphlib Rsamtools Rsubread S4Arrays S4Vectors SNPRelate STRINGdb ScaledMatrix Seqinfo ShortRead SingleCellExperiment SparseArray SpatialExperiment Spectra SummarizedExperiment TCGAutils TCseq TFBSTools TSCAN TrajectoryUtils TreeSummarizedExperiment UCSC.utils UCell VariantAnnotation XVector a4Core affxparser affy affyPLM affyio airway alabaster.schemas annaffy annotate apeglm aroma.light assorthead bamsignals basilisk batchelor beachmat biocViews biocmake biodb biomaRt biomformat biovizBase bluster bsseq bumphunter ccdata cicero cigarillo clusterProfiler coRdon cqn csaw cytolib dada2 dearseq decontam decoupleR diffHic dir.expiry dittoSeq edgeR enrichplot ensembldb fabia fgsea flowClust flowCore flowMerge fmcsR fmrs gcatest gcrma gcspikelite gdsfmt genefilter ggbio ggkegg ggmsa ggtree ggtreeExtra glmGamPoi glmSparseNet globaltest graph graphite gypsum h5mread illuminaio impute infercnv karyoploteR lefser leukemiasEset lfa limma lpsymphony lumi maftools marray metapod methrix methylumi mia microbiome minet minfi mixOmics monocle motifmatchr msa msdata multiHiCcompare multtest muscle mzID mzR oligo oligoClasses ontoProc pathview pcaMethods pdInfoBuilder phyloseq preprocessCore pvca pwalign qpgraph qsmooth quantsmooth qusage qvalue recount3 regioneR rhdf5 rhdf5filters ropls rrvgo rtracklayer sSeq safe scater scran scrapper scuttle seqLogo siggenes signatureSearch signatureSearchData simona simplifyEnrichment singscore slingshot snpStats sparseMatrixStats splatter ssize survcomp sva switchBox syntenet tkWidgets treeio tweeDEseq tximport variancePartition vsn widgetTools zFPKM BSgenome.Hsapiens.UCSC.hg18 BSgenome.Hsapiens.UCSC.hg18.masked BSgenome.Hsapiens.UCSC.hg19 BSgenome.Hsapiens.UCSC.hg19.masked BSgenome.Hsapiens.UCSC.hg38 BSgenome.Mmusculus.UCSC.mm10 BSgenome.Mmusculus.UCSC.mm9 BSgenome.Scerevisiae.UCSC.sacCer3 EnsDb.Hsapiens.v75 EnsDb.Hsapiens.v86 FDb.InfiniumMethylation.hg19 GO.db GenomeInfoDbData HDO.db IlluminaHumanMethylation450kmanifest TxDb.Hsapiens.UCSC.hg19.knownGene TxDb.Hsapiens.UCSC.hg38.knownGene TxDb.Mmusculus.UCSC.mm10.knownGene hgu133a.db hgu133plus2.db hgu95a.db hgu95av2.db hgu95av2cdf illuminaHumanv3.db metaboliteIDmapping moe430a.db org.At.tair.db org.Ce.eg.db org.Dm.eg.db org.Dr.eg.db org.Hs.eg.db org.Mm.eg.db org.Mmu.eg.db org.Pt.eg.db org.Rn.eg.db org.Sc.sgd.db reactome.db