## KH's personal ~/.R/check.Renviron. ## Last updated on 2023-07-03 ### Defaults for '--as-cran": commented out where not appropriate for ### all KH checks. _R_CHECK_AUTOCONF_=true ## _R_CHECK_BASHISMS_=true _R_CHECK_BOGUS_RETURN_=true _R_CHECK_BROWSER_NONINTERACTIVE_=true _R_CHECK_CODE_USAGE_VIA_NAMESPACES_=true _R_CHECK_CODE_USAGE_WITH_ONLY_BASE_ATTACHED_=true ## _R_CHECK_CODOC_VARIABLES_IN_USAGES_=true _R_CHECK_COMPILATION_FLAGS_=true ## _R_CHECK_CONNECTIONS_LEFT_OPEN_=true _R_CHECK_DEPENDS_ONLY_DATA_=true ## _R_CHECK_DONTTEST_EXAMPLES_=true _R_CHECK_DOT_FIRSTLIB_=true _R_CHECK_FF_AS_CRAN_=true _R_CHECK_FUTURE_FILE_TIMESTAMPS_=true _R_CHECK_INSTALL_DEPENDS_=true _R_CHECK_LIMIT_CORES_=true _R_CHECK_MATRIX_DATA_=true ## _R_CHECK_NATIVE_ROUTINE_REGISTRATION_=true _R_CHECK_NO_RECOMMENDED_=true _R_CHECK_NO_STOP_ON_TEST_ERROR_=true ## _R_CHECK_ORPHANED_=true _R_CHECK_OVERWRITE_REGISTERED_S3_METHODS_=true _R_CHECK_PACKAGE_DATASETS_SUPPRESS_NOTES_=true ## _R_CHECK_PACKAGES_USED_CRAN_INCOMING_NOTES_=true _R_CHECK_PACKAGES_USED_IGNORE_UNUSED_IMPORTS_=true _R_CHECK_PACKAGES_USED_IN_TESTS_USE_SUBDIRS_=true _R_CHECK_PRAGMAS_=true ## _R_CHECK_R_DEPENDS_=warn _R_CHECK_R_ON_PATH_=true _R_CHECK_RD_VALIDATE_RD2HTML_=${_R_CHECK_RD_VALIDATE_RD2HTML_-true} ## _R_CHECK_RD_CONTENTS_KEYWORDS_=true _R_CHECK_SCREEN_DEVICE_=stop _R_CHECK_S3_METHODS_NOT_REGISTERED_=true _R_CHECK_SHLIB_OPENMP_FLAGS_=true _R_CHECK_TIMINGS_=10 _R_CHECK_THINGS_IN_CHECK_DIR_=true ## _R_CHECK_THINGS_IN_TEMP_DIR_=true _R_CHECK_VIGNETTE_TITLES_=true ## _R_CHECK_XREFS_PKGS_ARE_DECLARED_=true ## _R_CHECK_XREFS_MIND_SUSPECT_ANCHORS_=true _R_SHLIB_BUILD_OBJECTS_SYMBOL_TABLES_=true ### Additional settings used for all KH checks. _R_CHECK_ALWAYS_LOG_VIGNETTE_OUTPUT_=true ## Remove eventually ... _R_CALLS_INVALID_NUMERIC_VERSION_=true ## _R_CHECK_CODE_ASSIGN_TO_GLOBALENV_=true _R_CHECK_CODE_ATTACH_=true _R_CHECK_CODE_DATA_INTO_GLOBALENV_=true _R_CHECK_CODETOOLS_PROFILE_="suppressPartialMatchArgs=false" ## Remove eventually (not needed for R >= 4.3.0) ## _R_CHECK_COMPILATION_FLAGS_KNOWN_="-Wstrict-prototypes" ## _R_CHECK_CRAN_INCOMING_CHECK_URLS_IN_PARALLEL_=true _R_CHECK_DEPRECATED_DEFUNCT_=true _R_CHECK_DOC_SIZES2_=true _R_CHECK_DOTCODE_RETVAL_=true _R_CHECK_EXECUTABLES_EXCLUSIONS_=false ## _R_CHECK_FF_CALLS_=registration _R_CHECK_FUTURE_FILE_TIMESTAMPS_LEEWAY_=6h _R_GC_FAIL_ON_ERROR_=true _R_CHECK_LENGTH_1_CONDITION_="package:_R_CHECK_PACKAGE_NAME_,verbose" ## _R_CHECK_LENGTH_1_CONDITION_=${_R_CHECK_LENGTH_1_CONDITION_-warn} ## _R_CHECK_LENGTH_1_LOGIC2_="package:_R_CHECK_PACKAGE_NAME_,verbose" _R_CHECK_OVERWRITE_REGISTERED_S3_METHODS_=true _R_CHECK_PACKAGE_DATASETS_SUPPRESS_NOTES_=true _R_CHECK_PKG_SIZES_=false _R_CHECK_R_DEPENDS_=true _R_CHECK_RD_LINE_WIDTHS_=true _R_CHECK_RD_MATH_RENDERING_=true _R_CHECK_REPLACING_IMPORTS_=true _R_CHECK_SERIALIZATION_=true _R_CHECK_SRC_MINUS_W_IMPLICIT_=true _R_CHECK_SUGGESTS_ONLY_=${_R_CHECK_SUGGESTS_ONLY_-true} _R_CHECK_SYSTEM_CLOCK_=false _R_CHECK_THINGS_IN_TEMP_DIR_EXCLUDE_="^(ompi|pulse|runtime-)" _R_CHECK_TOPLEVEL_FILES_=true _R_CHECK_VC_DIRS_=true _R_CHECK_VIGNETTES_SKIP_RUN_MAYBE_=true _R_CHECK_XREFS_USE_ALIASES_FROM_CRAN_=true ## Outputs _R_CHECK_TESTS_NLINES_=0 _R_CHECK_VIGNETTES_NLINES_=10000 ## Timings _R_CHECK_TIMINGS_=0 _R_CHECK_EXAMPLE_TIMING_CPU_TO_ELAPSED_THRESHOLD_=2.5 _R_CHECK_TEST_TIMING_=yes _R_CHECK_TEST_TIMING_CPU_TO_ELAPSED_THRESHOLD_=2.5 _R_CHECK_VIGNETTE_TIMING_=yes _R_CHECK_VIGNETTE_TIMING_CPU_TO_ELAPSED_THRESHOLD_=2.5 _R_CHECK_INSTALL_TIMING_CPU_TO_ELAPSED_THRESHOLD_=2.5