stoplist <- c("rggobi", "PKgraph", "beadarrayMSV", "SeqGrapheR", "demi", # oligo "Rcell", "RockFab", "gitter", # EBImage "MSeasy", "MSeasyTkGUI", "RMySQL", "TSMySQL", "dbConnect", "Causata", "BRugs","CARramps", "CARrampsOcl", "GridR", "OpenCL", "RBerkeley", "RDieHarder", "RMark", "RMongo", "ROAuth", "ROracle", "RProtoBuf", "RQuantLib", "RScaLAPACK", "Rcplex", "Rhpc", "Rmosek", "VBmix", "WideLM", "cmprskContin", "cplexAPI", "cudaBayesreg", "gputools", "gmatrix", "magma", "permGPU", "qtbase", "qtpaint", "qtutils", "rJavax", "rmongodb", "rpud", "rpvm", "rscproxy", "rzmq", "twitteR", "Rpoppler", "RcppOctave", "HiPLARM", "RAppArmor", "RSAP", "REBayes", "ora", "rLindo") options(repos=c(CRAN="http://cran.r-project.org")) #options(BioC_mirror="http://bioconductor.statistik.tu-dortmund.de") setRepositories(ind=1) update.packages(ask=FALSE) new <- new.packages() new <- new[! new %in% stoplist] if(length(new)) install.packages(new)