stoplist <-
  c(
      ## blacklisted
      "N2R", "sccore", "leidenAlg", "pagoda2", "conos", 'dendsort', 'gapmap',
      "tiledb",
	"cronR",

      "Boom", "BoomSpikeSlab", "bsts", "CausalImpact", "MarketMatching", "TSstudio", "cbar", "SPORTSCausal", "bayesmodels",
      "DGEobj.utils", # IHW needs lpsymphony
      "RDieHarder", # needs GNU make and does not declare it
      "RDocumentation", # wiped out ~/.Rprofile
#      "RestRserve",
      "Rmosek", "REBayes", "RCBR", "NPMLEmix", "dipw", "cmaRs",
      "Rhpc", # needs R as a shared library
      "Rsymphony", "PortfolioOptim", "ROI.plugin.symphony", "strand",  "WSGeometry", "surveyvoi",
      "iptools", "rIP", # /usr/include/net/if.h
      "md.log", # naming
      "multipanelfigure", # crashes on magick
      ## other packages, usually BioC
      "RAMClustR", "specmine.datasets",# xcms
      "MSeasy", "MSeasyTkGUI", "specmine", "CorrectOverloadedPeaks", "LipidMS", "binneR",  "IDSL.IPA", # mzR
      "EthSEQ", "R.SamBada", "dartR", "simplePHENOTYPES", # SNPRelate and gdsfmt, latter fails to install
      "Brundle", "Mega2R", "MetaClean",
      "SubtypeDrug",# ChemineR requires rsvg
      "diffMeanVar", "maGUI", # have a ridiculous number of BioC dependencies
      "GMMAT", "RsqMed", 
      "coxmeg",
      "modeltime.h2o",
      "mi4p", # BioC package DARPA, ultimately mzR

      ## C++17
      "POSetR", "RcppSimdJson", "httpgd", "image.binarization", 
      "profoc", "rim", "seqR", "tidysq",
      # hence
      "simfinapi", "td",
      # and old, "ImageFusion", 

      ## external libs
      "BRugs", 'RQuantLib',
      "RVowpalWabbit", # Boost::Program_Options
#      "RProtoBuf", "proffer", "factset.protobuf.stach", "acumos",
      "Rblpapi", "RcppRedis", "gpg",
      "archive",
      "image.binarization", # also C++17
      "littler", # needs R as a shared library
      #"nmaINLA", # Suggests: INLA
      "opencv", "image.textlinedetector",
      "qtbase", "qtpaint", "qtutils",
      "redux", "doRedis",# hiredis
      "rsolr", "trackr", # hangs check run
      "rrd",
      "ssh", "qsub", "sybilSBML", "tesseract", "neo4jshell", "openSkies", "plumberDeploy",
      "MAGEE",
      ## external tools
      "ROI.plugin.cplex", "Rcplex", "cplexAPI",
      "IRATER", # R2admb for anything useful
      "RAppArmor", "RcppAPT", "RcppMeCab", "Rgretl", "RmecabKo",
      "R2MLwiN",
      "RMark", "R2ucare", "multimark",
      "ROracle", 'ora',
      "Rsagacmd",
      "av", "dynaSpec",# FFmpeg
      "caRpools", # MAGeCK
      "fsdaR", # MATLAB runtime
      "gifski",  "moveVis", "salso", "baseflow", "caviarpd", "string2path",# Cargo/Rust
      "rtsVis", # from moveVis
      "karel", # from gifski
      "msgtools",
      "nFCA", # ruby
      "rggobi", "PKgraph", "SeqGrapheR", "beadarrayMSV", "clusterfly",
      "rLindo",
      "rsvg", "ChemmineR", "RIdeogram", "colorfindr", "netSEM", "uCAREChemSuiteCLI", "vtree", "integr", "cohorttools", "actel", "AdhereRViz", "plethem", "svgtools", "chess", "umx", "hhcartr", "PRISMA2020", "tidycharts",
      "tmuxr"
       )

## Java version >= 8
Java <- c("ChoR", "CrypticIBDcheck", "J4R", "RKEEL", "RKEELdata", "RKEELjars",
          "RxnSim", "SimuChemPC", "corehunter", "deisotoper", "helixvis",
          "jdx",  "r5r", #hence
          "jsr223", "qCBA", "rCBA", "rJPSGCS", "rcdk",
          "enviGCMS", "BioMedR", "pmd", "chemmodlab", "MetaDBparse", # rcdk
          'rscala', 'bamboo', 'sdols', 'shallot', 'AntMAN', 'aibd',
          'RWeka', 'RWekajars', "AntAngioCOOL", "BASiNET", "Biocomb", "pguIMP",
          'D2MCS', # from FSelector
          "DecorateR", "FSelector", "HybridFS", "LLM", "MSIseq",
          "NoiseFiltersR", "RtutoR", "aslib", "lilikoi", "petro.One",
          "smartdata", "streamMOA", "DIscBIO",
	  "RJDemetra", "ggdemetra", "rjdmarkdown", 
          "rviewgraph", "pathfindR", "rjdqa", "rsubgroup")

Java <- c(Java, "XLConnect", "Dominance", "LLSR", "MLMOI", "table1xls", "betadiv", "xlsimple", 'staplr')

CUDA <- # etc
c("cudaBayesreg", "kmcudaR", "permGPU", "localsolver", "OpenCL", "CARrampsOcl", "gpuR", "bayesCL", "gpda")


WindowsOnly <- c("BiplotGUI", "MDSGUI", "R2MLwiN", "R2PPT", "R2wd", "RInno", "RPyGeo", "RWinEdt", "TinnR", "blatr", "excel.link", "installr", "spectrino", "taskscheduleR")

stoplist <- c(stoplist, Java, CUDA)


fakes <- "ROracle"

ll <- c("## Fake installs",
        paste(fakes, "-OPTS = --install=fake", sep=""))
writeLines(ll, "Makefile.fakes")

recommended <-
    c("KernSmooth", "MASS", "Matrix", "boot", "class", "cluster",
      "codetools", "foreign", "lattice", "mgcv", "nlme", "nnet",
      "rpart", "spatial", "survival")