## parallel will not work as make is involved
foo <- row.names(installed.packages(.libPaths()[1]))

chooseBioCmirror(ind = 1)
setRepositories(ind = c(2:4))
#options(repos = c(getOption('repos'),
#                  Omegahat = "http://www.omegahat.net/R"))
foo2 <- row.names(available.packages())
foo <- intersect(foo, foo2)

options(timeout = 600)
source('BioCgcc.R')
foo <- setdiff(foo, c(gcc, 'RCurl', 'RJSONIO', 'XML'))

Sys.setenv(DISPLAY = ':5', MAKE = 'gmake')
install.packages(foo, Ncpus = 1)