#! /bin/csh
set path=(. ~/bin /usr/local/bin /opt/developerstudio12.5/bin /usr/xpg4/bin /usr/ccs/bin /usr/bin/X11 /usr/openwin/bin /opt/jdk1.7.0_65/bin /bin /usr/bin /usr/sbin /sbin /opt/csw/bin /usr/sfw/bin /usr/local/texlive/current/bin/i386-solaris /opt/SUNWhpc/HPC8.2.1c/sun/bin)

setenv PKG_CONFIG_PATH /opt/csw/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr/lib/pkgconfig

~/R/packages/InUse.R ~/R/packages/tests32 || exit 1

cd ~/R
./update
gmake -j10 -C ~/R/cc
gmake -j10 -C ~/R/gcc

limit cputime 30m

setenv DISPLAY :5
setenv RGL_USE_NULL true

setenv LC_CTYPE en_GB.UTF-8
setenv _R_CHECK_TIMINGS_ 10
setenv _R_CHECK_INSTALL_DEPENDS_ TRUE
setenv _R_CHECK_SUGGESTS_ONLY_ TRUE
setenv _R_CHECK_NO_RECOMMENDED_ TRUE
setenv _R_CHECK_DEPRECATED_DEFUNCT_ true
setenv _R_CHECK_THINGS_IN_CHECK_DIR_ true
setenv _R_CHECK_THINGS_IN_TEMP_DIR_ true

cd R/packages

~/R/packages/revdeps1 ~/R/Lib32 ~/R/packages/tests32/revdeps.rds
env MAKE=gmake Rscript updateBioC.R
env MAKE=gmake GREP=ggrep ~/R/gcc/bin/Rscript updateBioC.R
#Rscript -e 'update.packages(.Library, ask = F)'
#~/R/gcc/bin/Rscript -e 'update.packages(.Library, ask = F)'
cd tests32
env R_DEFAULT_INTERNET_TIMEOUT=300 make install
~/R/packages/revdeps2 ~/R/Lib32 ~/R/packages/tests32/revdeps.rds
rm -f ~/R/packages/tests32/revdeps.rds
./script
echo 'packaging'
make package
echo 'done'